genome.fa.s211.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2157208

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  4  of  15  ( 1763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365541--365607	5	14.2	5	72	21	56	37	0	0	62	0.95
365540--365608	23	3.0	24	81	10	90	37	0	0	62	0.96
365541--365616	30	2.5	32	85	8	104	39	0	0	60	0.97
365540--365606	7	10.6	7	74	22	60	38	0	0	61	0.96
365550--365616	23	3.2	20	78	17	57	40	0	0	59	0.97
372761--372814	20	2.8	20	71	23	53	55	0	0	44	0.99
372762--372834	17	4.5	17	74	16	50	54	0	0	45	0.99
374235--374275	21	2.0	20	95	4	73	48	12	4	34	1.62
375265--375304	21	1.9	21	90	10	64	40	0	0	60	0.97
375491--375565	30	2.5	30	85	8	100	38	1	1	58	1.15
375992--376037	2	23.0	2	100	0	92	50	0	0	50	1.00
376762--376815	25	2.2	24	83	9	65	35	0	1	62	1.06
377086--377118	8	4.1	8	100	0	66	75	0	0	24	0.80
377160--377223	25	2.5	27	78	12	73	53	0	0	46	1.00
377695--377728	16	2.2	15	89	5	50	23	0	11	64	1.26
377880--377908	6	5.0	6	95	4	51	65	0	0	34	0.93
379120--379174	22	2.4	23	80	14	78	45	0	0	54	0.99
381033--381142	15	7.4	15	67	21	54	56	0	0	42	1.05
381058--381144	42	1.9	47	82	15	112	56	0	1	42	1.07
381254--381417	8	19.0	8	70	20	66	40	0	1	57	1.11
381320--381380	31	1.9	32	90	3	97	49	0	0	50	1.00
381373--381431	6	10.2	6	85	10	79	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381366--381430	17	3.7	18	79	16	66	33	0	0	66	0.92
384499--384538	20	2.0	21	85	5	55	17	27	0	55	1.43
386757--387008	54	4.7	55	80	5	248	37	18	17	26	1.93
387041--387144	54	1.9	54	86	0	145	34	17	19	28	1.94
387042--387168	54	2.4	54	81	2	139	35	16	18	29	1.93
390852--390890	14	2.8	14	88	0	51	79	0	15	5	0.90
390852--390890	20	2.0	20	84	0	51	79	0	15	5	0.90
393241--393310	11	6.4	11	73	12	54	30	0	1	68	0.98
393262--393301	21	2.0	20	85	5	53	30	0	0	70	0.88
393254--393317	32	2.0	33	84	3	85	31	1	1	65	1.11
394598--394627	9	3.2	9	95	4	51	33	0	0	66	0.92
394597--394652	22	2.6	22	81	13	64	37	0	0	62	0.95
394613--394664	22	2.3	23	78	18	56	46	0	0	53	1.00
394858--394901	19	2.3	19	88	7	63	36	0	2	61	1.09
395267--395316	21	2.2	24	82	13	70	70	0	2	28	0.99
395387--395420	3	11.3	3	100	0	68	32	0	0	67	0.91
395521--395558	18	2.1	18	90	0	58	42	2	10	44	1.52
395533--395570	12	2.9	14	88	7	53	34	0	18	47	1.49
396154--396183	2	15.0	2	100	0	60	50	0	0	50	1.00
396305--396344	20	2.0	21	90	5	64	40	0	2	57	1.12
396325--396353	15	2.0	15	93	6	51	37	0	0	62	0.96
396305--396369	34	1.9	34	81	6	78	38	3	1	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396420--396463	22	2.0	21	87	12	63	63	4	0	31	1.14
396466--396565	25	4.3	23	75	17	84	47	1	0	52	1.07
396466--396523	30	2.0	29	83	10	73	43	1	0	55	1.10
396482--396565	4	20.8	4	73	15	50	48	1	0	50	1.08
396886--396941	21	2.8	20	83	5	78	39	1	0	58	1.08
396979--397016	18	2.0	19	85	10	51	47	0	2	50	1.15
397135--397263	13	10.3	13	67	22	55	55	0	0	44	0.99
397139--397216	27	2.7	28	75	18	88	60	0	0	39	0.97
397197--397262	22	3.1	22	70	12	59	53	0	0	46	1.00
397127--397240	31	3.8	30	69	23	89	57	0	0	42	0.98
397197--397242	15	2.9	16	81	12	60	56	0	0	43	0.99
397633--397661	15	1.9	15	100	0	58	55	0	0	44	0.99
398929--398963	15	2.2	16	90	5	54	45	8	0	45	1.34
400021--400112	34	2.6	35	73	14	91	59	2	1	36	1.17
400050--400125	37	2.1	37	80	9	84	63	1	0	35	1.03
400961--400985	8	3.1	8	100	0	50	76	0	0	24	0.80
404110--404659	272	2.0	272	97	0	1046	25	15	16	42	1.87
408514--408560	20	2.5	20	80	19	64	59	0	0	40	0.97
408581--408645	6	10.7	6	79	9	69	52	1	1	44	1.19
408906--408953	18	2.9	17	80	20	57	27	0	4	68	1.07
411772--411841	27	2.6	27	83	0	86	48	17	4	30	1.66
413717--413762	21	2.1	22	84	4	58	21	26	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416294--416379	27	3.2	26	85	4	109	54	17	4	23	1.61
417789--417830	6	7.3	6	78	10	52	47	0	0	52	1.00
417789--417838	16	2.9	18	82	11	68	44	0	0	56	0.99
420519--420607	27	3.3	27	84	3	117	53	16	5	23	1.64
422011--422052	6	7.3	6	78	10	52	47	0	0	52	1.00
422011--422060	16	2.9	18	82	11	68	44	0	0	56	0.99
422568--422620	25	2.1	25	86	6	72	33	0	3	62	1.13
422801--422833	16	2.1	16	88	5	50	51	0	0	48	1.00
423004--423080	16	4.4	17	71	20	52	50	0	0	49	1.00
423050--423083	17	2.0	17	94	0	59	55	0	0	44	0.99
423293--423370	36	2.2	33	78	15	86	47	0	0	52	1.00
423308--423426	25	4.8	25	67	20	79	51	0	0	48	1.00
423347--423399	20	2.7	20	80	16	65	56	0	0	43	0.99
423381--423427	11	3.5	15	72	24	50	51	0	0	48	1.00
423310--423420	36	3.0	35	71	20	84	50	0	0	49	1.00
423369--423428	25	2.4	24	89	10	86	53	0	0	46	1.00
423488--423512	6	4.2	6	100	0	50	32	0	52	16	1.44
426552--426587	17	2.1	17	89	0	54	63	0	2	33	1.08
426700--426738	19	2.2	17	86	9	51	64	0	0	35	0.94
428491--428530	2	20.0	2	89	0	53	57	0	0	42	0.98
432590--432627	17	2.2	17	100	0	76	23	10	21	44	1.83
432674--432705	3	10.7	3	93	0	55	68	3	0	28	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433041--433072	2	16.0	2	100	0	64	50	0	0	50	1.00
435470--435496	3	9.0	3	100	0	54	33	0	0	66	0.92
439895--439983	38	2.4	39	79	9	105	44	0	0	55	0.99
440283--440342	30	2.0	30	96	0	111	11	33	8	46	1.70
446204--446263	31	1.9	31	86	0	84	26	20	23	30	1.98
447849--447889	15	2.5	17	88	7	59	46	2	0	51	1.14
449678--449734	25	2.4	23	83	13	80	40	1	0	57	1.09
453823--453861	20	1.9	21	89	5	62	53	0	2	43	1.14
454784--454839	17	3.4	17	75	5	51	32	8	25	33	1.87
454804--454835	16	2.0	16	93	0	55	34	0	21	43	1.53
454937--454973	16	2.3	16	90	0	56	32	2	27	37	1.71
457768--457812	2	22.5	2	90	0	72	46	0	4	48	1.22
457768--457812	14	3.2	14	96	0	81	46	0	4	48	1.22
458542--458579	15	2.5	15	100	0	76	15	23	13	47	1.81
459574--459641	19	3.9	18	75	23	74	36	10	14	38	1.81
459576--459636	32	1.9	32	93	0	104	36	9	16	37	1.82
462836--462874	20	2.0	20	85	5	53	41	0	2	56	1.13
462833--462909	33	2.4	30	79	18	75	42	0	2	54	1.14
462889--462942	24	2.2	24	83	6	65	42	1	0	55	1.10
462903--462990	36	2.4	37	83	5	99	50	2	0	47	1.13
462949--462991	22	2.0	22	86	9	61	55	2	0	41	1.12
462966--463053	31	2.8	30	83	8	97	54	7	0	37	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465310--465334	13	1.9	13	100	0	50	36	16	16	32	1.90
465399--465423	13	1.9	13	100	0	50	32	16	16	36	1.90
465432--465552	52	2.3	52	94	0	215	35	18	17	28	1.93
468930--468979	17	2.7	19	87	9	68	36	14	20	30	1.91
469007--469079	20	3.7	20	90	0	119	28	12	10	47	1.75
472260--472316	20	2.8	20	84	5	71	40	14	14	31	1.85
473133--473173	21	2.0	22	85	9	59	21	19	17	41	1.90
473887--473930	21	2.0	21	82	13	52	31	11	4	52	1.57
474007--474057	25	2.0	25	92	0	84	17	31	11	39	1.86
476565--476612	26	1.9	24	87	8	69	60	0	2	37	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15