genome.fa.s211.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2157208

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  13  of  15  ( 1763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1802793--1802845	11	5.1	11	76	17	51	54	0	0	45	0.99
1802962--1803025	25	2.6	25	85	5	76	45	1	4	48	1.32
1803179--1803328	52	2.9	50	80	15	164	55	2	0	42	1.14
1803704--1803840	73	1.9	73	80	8	163	41	0	0	57	1.04
1803786--1803841	17	3.3	18	80	7	55	39	0	0	60	0.97
1803777--1803854	12	6.6	12	72	23	51	34	0	0	65	0.93
1809628--1809732	14	7.7	13	67	20	63	40	0	0	59	0.98
1809634--1809732	30	3.6	28	79	15	100	40	0	0	59	0.97
1809658--1809702	13	2.9	16	71	21	51	48	0	0	51	1.00
1809689--1809737	25	1.9	26	91	4	82	38	0	0	61	0.96
1813247--1813301	18	3.2	18	75	15	53	52	0	1	45	1.11
1813621--1813693	16	4.6	15	77	6	65	35	1	5	57	1.30
1813621--1813706	31	2.7	31	81	5	91	37	1	5	55	1.31
1819637--1819663	2	13.5	2	100	0	54	48	0	0	51	1.00
1821678--1821719	22	1.9	22	95	0	75	28	14	4	52	1.62
1824303--1824582	142	2.0	143	91	0	454	36	12	16	33	1.87
1825216--1825484	93	2.9	91	77	10	215	39	11	2	46	1.55
1825267--1825503	93	2.5	93	80	4	262	40	12	2	44	1.56
1825945--1826004	22	2.7	22	85	14	72	55	0	0	45	0.99
1828894--1828931	20	1.9	20	84	10	51	55	0	0	44	0.99
1831522--1831577	16	3.5	16	78	9	60	30	3	8	57	1.47
1831535--1831598	16	4.0	16	80	12	69	29	1	7	60	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1831535--1831598	32	2.0	32	87	6	94	29	1	7	60	1.34
1831754--1831806	24	2.4	22	78	18	56	35	0	0	64	0.94
1833219--1833275	24	2.3	26	81	6	64	33	7	1	57	1.36
1833733--1833765	16	2.1	16	94	0	57	36	21	0	42	1.53
1833877--1834052	87	2.0	87	96	0	325	25	28	13	32	1.93
1837038--1837088	22	2.3	22	76	6	59	45	0	1	52	1.12
1837103--1837148	19	2.4	18	80	19	58	47	0	0	52	1.00
1837107--1837147	21	2.0	20	86	13	57	46	0	0	53	1.00
1837109--1837147	20	2.0	20	90	10	62	46	0	0	53	1.00
1837645--1837674	3	10.0	3	100	0	60	0	0	66	33	0.92
1838725--1838768	14	3.3	13	81	12	54	27	0	2	70	0.99
1840845--1840892	24	2.0	24	95	0	87	37	4	18	39	1.70
1846892--1846923	3	10.7	3	100	0	64	0	0	31	68	0.90
1847387--1847429	14	3.0	14	80	16	52	58	2	0	39	1.11
1847396--1847503	24	4.0	26	69	23	80	58	0	0	39	1.11
1848094--1848131	17	2.3	16	95	4	67	57	5	2	34	1.35
1848950--1848983	13	2.6	13	85	0	50	47	0	0	52	1.00
1851952--1852048	28	3.4	28	71	17	83	45	12	13	28	1.80
1851783--1852167	58	6.8	57	72	12	208	45	14	11	27	1.80
1851847--1852086	115	2.1	115	81	1	275	45	15	12	27	1.81
1852065--1852148	29	2.9	29	68	19	75	47	14	11	26	1.78
1852078--1852195	58	2.0	58	83	3	148	47	15	11	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1852289--1852348	29	2.0	30	83	3	77	51	10	13	25	1.71
1857082--1857126	22	2.0	22	91	0	72	33	8	20	37	1.83
1857104--1857199	39	2.5	40	86	5	135	33	11	17	37	1.86
1858053--1858099	25	2.0	24	83	8	60	23	8	4	63	1.40
1859451--1859492	12	3.5	12	86	0	57	33	2	0	64	1.07
1859453--1859493	16	2.5	17	76	11	50	34	2	0	63	1.08
1861427--1861454	12	2.3	12	100	0	56	67	0	0	32	0.91
1864522--1864627	53	2.0	52	83	10	135	47	15	2	34	1.60
1869394--1869428	2	17.5	2	87	0	52	48	5	0	45	1.26
1869394--1869427	14	2.4	14	100	0	68	50	5	0	44	1.26
1870897--1870922	6	4.3	6	100	0	52	34	15	34	15	1.89
1875657--1875704	23	2.0	24	84	4	62	41	0	0	58	0.98
1876385--1876430	24	1.9	24	95	0	83	50	0	2	47	1.13
1876403--1876497	31	3.1	31	80	3	104	53	1	5	40	1.30
1877699--1877786	16	5.4	16	72	9	70	56	3	2	37	1.28
1878674--1878707	17	1.9	18	88	5	52	55	0	8	35	1.31
1878713--1878759	18	2.6	19	80	10	53	59	0	0	40	0.97
1880972--1881015	19	2.2	20	80	8	54	56	0	0	43	0.99
1881238--1881276	13	2.9	13	84	3	51	35	0	5	58	1.20
1881324--1881405	23	3.5	24	77	14	89	35	0	4	59	1.19
1881355--1881435	40	2.0	41	87	2	119	34	0	4	60	1.18
1881424--1881565	70	2.0	71	86	1	196	30	0	13	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1881414--1881857	143	3.1	141	73	13	376	33	2	10	53	1.47
1881419--1881857	212	2.1	213	80	8	473	33	2	10	53	1.47
1881652--1881840	71	2.6	71	80	12	206	34	3	8	53	1.47
1881799--1881905	47	2.3	47	96	0	205	33	1	10	54	1.45
1881743--1881979	120	2.0	121	86	7	340	33	1	10	53	1.46
1881852--1882141	75	3.9	74	84	7	342	36	0	8	53	1.38
1881852--1882141	145	2.0	144	84	6	377	36	0	8	53	1.38
1882464--1882520	15	3.6	17	77	13	68	49	0	0	50	1.00
1882889--1882930	22	1.9	22	85	9	59	38	0	0	61	0.96
1882888--1882915	14	2.0	14	100	0	56	35	0	0	64	0.94
1883380--1883526	15	9.5	15	71	19	54	48	0	0	50	1.10
1883427--1883635	5	41.4	5	65	21	64	41	0	2	55	1.16
1883427--1883534	21	4.9	21	81	14	137	45	0	0	54	0.99
1883428--1883608	46	4.0	44	72	19	158	41	0	2	54	1.19
1883563--1883631	9	7.3	9	71	20	52	36	0	1	62	1.04
1883427--1883635	15	14.9	14	69	18	89	41	0	2	55	1.16
1884670--1884724	25	2.2	24	81	12	58	36	0	1	61	1.06
1885477--1885507	3	10.3	3	92	0	53	67	3	0	29	1.06
1886428--1886586	80	2.0	79	90	3	248	40	13	20	25	1.88
1892549--1892693	72	2.0	72	95	0	263	29	16	21	32	1.95
1892742--1892792	24	2.1	24	81	0	57	60	0	0	39	0.97
1892748--1892805	19	3.0	20	78	19	68	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1893491--1893530	15	2.5	17	88	8	57	47	2	0	50	1.14
1895247--1895283	2	18.5	2	100	0	74	51	0	0	48	1.00
1896500--1897302	153	5.2	150	71	12	506	40	17	13	28	1.87
1898569--1898594	13	2.0	13	100	0	52	30	15	15	38	1.88
1898549--1898615	33	2.0	33	88	0	98	25	14	16	43	1.86
1901075--1901143	27	2.5	27	86	6	86	23	30	23	23	1.99
1901130--1901299	52	3.3	51	74	11	157	28	25	14	31	1.94
1901283--1901359	28	2.8	28	87	0	100	23	33	19	23	1.97
1900960--1901360	212	1.9	212	88	3	601	27	27	14	30	1.95
1901020--1901438	107	3.9	107	71	10	255	26	27	15	30	1.96
1907594--1908344	55	13.6	55	92	1	1179	28	30	20	20	1.98
1909202--1909269	19	3.9	19	78	21	85	35	11	14	38	1.83
1909204--1909266	32	2.0	32	96	0	117	34	12	15	36	1.86
1909223--1909247	13	1.9	13	100	0	50	36	16	16	32	1.90
1909309--1909334	13	2.0	13	100	0	52	30	15	15	38	1.88
1909289--1909355	33	2.0	33	88	0	98	25	14	16	43	1.86
1911816--1911884	27	2.5	27	86	6	86	23	30	23	23	1.99
1911871--1912040	52	3.3	51	74	11	157	28	25	14	31	1.94
1912024--1912100	28	2.8	28	87	0	100	23	33	19	23	1.97
1911701--1912101	212	1.9	212	88	3	601	27	27	14	30	1.95
1911761--1912179	107	3.9	107	71	10	255	26	27	15	30	1.96
1913342--1913385	20	2.1	21	91	4	72	61	20	0	18	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1913950--1913974	13	1.9	13	100	0	50	64	4	0	32	1.12
1918738--1918809	25	3.0	24	82	15	94	25	20	12	41	1.87
1926847--1927047	52	3.9	52	92	1	314	30	15	19	33	1.93
1927036--1927060	13	1.9	13	100	0	50	36	16	16	32	1.90
1927123--1927147	13	1.9	13	100	0	50	32	16	16	36	1.90
1928438--1928483	23	2.0	24	86	4	67	76	2	15	6	1.09
1928554--1928608	26	2.2	25	83	3	74	70	7	1	20	1.20
1928832--1928858	13	2.1	13	100	0	54	14	0	0	85	0.61
1930041--1930076	2	18.0	2	94	0	63	52	0	0	47	1.00
1938773--1938828	12	4.8	11	79	14	51	39	1	0	58	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15