genome.fa.s211.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2157208

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  8  of  15  ( 1763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1046185--1046244	27	2.2	27	93	0	102	28	1	43	26	1.65
1050267--1050300	16	2.1	16	89	10	52	79	0	2	17	0.86
1050343--1050388	21	2.2	21	92	0	74	45	0	26	28	1.54
1050356--1050397	21	2.0	21	85	0	57	42	0	30	26	1.55
1051547--1051582	18	2.1	17	89	5	54	69	0	0	30	0.89
1067444--1067493	24	2.0	26	88	7	77	70	2	0	28	0.99
1067533--1067578	21	2.2	21	92	0	74	52	0	19	28	1.47
1069282--1069320	14	2.7	15	80	8	53	30	5	0	64	1.15
1084023--1084092	33	2.1	33	100	0	140	34	4	0	61	1.16
1084699--1084732	17	2.0	17	94	0	59	73	0	2	23	0.97
1084774--1084815	21	2.0	21	90	0	66	57	0	11	30	1.35
1086406--1086455	27	1.9	26	88	8	75	52	22	4	22	1.64
1096930--1096963	17	2.0	17	88	0	50	64	0	0	35	0.94
1099782--1099829	20	2.3	21	85	7	62	25	10	10	54	1.66
1100649--1100737	44	2.0	44	100	0	178	39	2	26	31	1.69
1101993--1102023	14	2.2	14	100	0	62	29	6	41	22	1.78
1108581--1108669	34	2.7	34	85	3	128	38	25	2	33	1.69
1117839--1117986	20	6.8	20	73	18	127	39	10	18	31	1.84
1117791--1117966	71	2.5	71	86	0	235	40	11	18	30	1.85
1118353--1118476	49	2.6	47	80	7	133	33	16	25	24	1.96
1118558--1119104	28	18.6	28	85	6	576	20	17	31	30	1.96
1118553--1119072	96	5.9	91	83	8	473	20	17	31	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120318--1120370	20	2.7	18	78	18	52	5	5	7	81	1.00
1134352--1134426	32	2.4	32	90	2	116	41	9	22	26	1.84
1134413--1134489	20	3.8	20	81	6	102	40	11	15	32	1.84
1138541--1138605	24	2.6	26	75	9	71	53	0	0	46	1.00
1138269--1138597	181	1.8	183	87	2	502	41	11	8	39	1.71
1139736--1139769	14	2.4	14	90	9	52	55	0	0	44	0.99
1142202--1142236	9	3.9	9	84	0	52	31	0	5	62	1.18
1142744--1142807	17	3.9	17	74	24	66	43	0	0	56	0.99
1142753--1142810	14	3.9	14	76	14	53	43	0	0	56	0.99
1142744--1142807	16	3.9	17	74	24	66	43	0	0	56	0.99
1145201--1145237	3	12.0	3	94	5	65	64	0	0	35	0.94
1147190--1147267	39	2.0	40	82	12	99	53	0	6	39	1.26
1148672--1148714	19	2.3	19	84	8	52	11	6	6	74	1.21
1148736--1148793	19	3.4	19	73	26	74	43	17	0	39	1.49
1150110--1150175	2	34.5	2	73	19	52	48	3	3	45	1.33
1150110--1150180	25	3.0	24	76	8	74	49	4	2	43	1.36
1150110--1150175	17	3.9	17	73	15	57	48	3	3	45	1.33
1150112--1150173	21	3.0	20	79	13	63	48	3	3	45	1.34
1151515--1151594	32	2.5	31	84	10	99	57	0	0	42	0.98
1151515--1151639	31	3.7	32	75	17	101	57	0	0	42	0.98
1151537--1151600	21	3.1	20	76	17	60	51	0	0	48	1.00
1151761--1151815	23	2.6	23	83	11	64	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1151762--1151824	21	2.9	22	76	19	60	58	0	0	41	0.98
1152550--1152602	20	2.5	20	81	6	61	47	0	0	52	1.00
1153133--1153171	13	3.0	13	96	0	69	25	0	0	74	0.82
1153406--1153444	19	2.1	19	85	0	51	38	0	0	61	0.96
1153405--1153529	25	4.8	25	72	13	92	41	0	0	57	1.04
1159582--1159637	15	3.6	15	79	16	53	60	0	0	39	0.97
1161471--1161533	32	2.0	32	87	9	94	34	11	14	39	1.81
1161545--1161579	15	2.2	16	90	5	54	37	14	17	31	1.89
1164561--1164978	208	2.0	208	94	1	730	56	10	5	28	1.54
1165054--1165146	2	51.5	2	74	19	80	49	1	1	48	1.15
1165054--1165137	7	12.4	7	85	8	77	47	1	1	50	1.16
1165792--1165830	19	2.1	19	90	0	60	58	0	0	41	0.98
1165776--1165839	25	2.5	26	70	14	62	59	0	0	40	0.97
1169227--1169309	24	3.5	24	88	0	112	7	24	39	28	1.82
1169201--1169311	6	18.5	6	84	0	87	8	23	39	28	1.83
1169499--1169567	19	3.3	20	74	22	63	59	0	0	40	0.97
1169471--1169571	25	3.8	25	71	23	82	58	0	0	41	0.98
1170269--1170337	25	2.7	25	82	8	77	46	1	0	52	1.09
1170269--1170319	26	2.0	26	88	7	77	43	1	0	54	1.11
1171183--1171224	22	2.0	22	86	13	61	54	0	0	45	0.99
1171217--1171264	19	2.7	19	78	18	59	60	0	0	39	0.97
1171892--1171939	20	2.3	20	75	10	53	29	0	2	68	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1172531--1172564	2	17.0	2	93	0	59	47	0	0	52	1.00
1174307--1174348	22	1.9	22	85	9	59	54	7	2	35	1.41
1176402--1176443	14	2.9	14	80	20	50	59	0	0	40	0.97
1176741--1176786	18	2.6	17	81	15	58	43	4	0	52	1.21
1177345--1177386	19	2.3	19	95	4	77	19	0	30	50	1.48
1177621--1177656	16	2.2	16	95	0	63	47	0	2	50	1.15
1178010--1178067	25	2.4	25	82	8	75	55	3	5	36	1.39
1179251--1179331	36	2.4	33	77	18	94	51	0	0	48	1.00
1179609--1179657	11	4.5	11	77	12	57	38	0	0	61	0.96
1186837--1186926	47	1.9	47	95	0	162	42	15	16	25	1.88
1209134--1209185	22	2.3	23	96	3	97	59	9	11	19	1.59
1210100--1210174	20	3.8	20	80	3	80	40	12	13	34	1.81
1210097--1210174	40	2.0	39	87	2	111	39	12	12	34	1.82
1210585--1210613	13	2.2	13	100	0	58	27	13	17	41	1.87
1213837--1213894	20	2.9	20	84	5	73	41	13	12	32	1.82
1213975--1214046	20	3.7	19	87	7	92	36	13	15	34	1.87
1214899--1214948	19	2.7	19	85	14	70	58	0	2	40	1.10
1214899--1214981	33	2.4	33	82	9	87	57	0	1	40	1.06
1215528--1215602	20	4.1	20	65	28	58	40	0	0	60	0.97
1215503--1215584	32	2.5	33	84	7	105	41	1	1	56	1.15
1215858--1215904	16	2.9	17	79	17	55	63	0	0	36	0.94
1215858--1216044	26	7.0	26	70	17	107	57	0	1	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1215929--1216021	32	3.2	31	76	17	92	56	0	0	43	0.99
1215925--1215996	32	2.3	31	81	13	94	54	0	0	45	0.99
1215936--1216017	14	5.9	14	73	18	64	58	0	0	41	0.98
1222566--1222590	4	6.2	4	100	0	50	24	0	24	52	1.48
1223655--1223694	2	20.0	2	89	0	62	47	0	5	47	1.24
1225774--1225845	24	3.0	24	70	25	71	43	18	5	33	1.73
1226678--1226778	50	2.0	50	100	0	202	45	8	17	27	1.78
1228420--1228449	2	15.0	2	92	0	51	50	0	3	46	1.18
1229767--1229807	2	21.0	2	95	5	75	51	0	0	48	1.00
1230760--1230813	15	3.4	16	69	21	51	55	0	1	42	1.10
1230694--1230917	104	2.1	104	82	12	260	53	0	3	41	1.24
1230858--1230892	18	2.0	17	88	5	52	57	0	0	42	0.99
1230749--1230953	31	6.1	33	71	14	109	53	0	3	41	1.26
1230739--1230959	104	2.1	103	82	7	261	54	1	3	40	1.26
1230968--1231016	12	3.8	13	80	17	57	69	0	0	30	0.89
1230975--1231015	12	3.3	13	86	10	59	70	0	0	29	0.87
1231391--1231432	11	4.0	10	84	9	57	73	2	0	23	0.94
1233308--1233336	13	2.1	14	93	6	51	55	0	0	44	0.99
1233395--1233437	18	2.3	19	80	12	52	55	0	0	44	0.99
1233400--1233437	13	2.8	13	84	15	51	57	0	0	42	0.98
1234745--1234852	53	2.0	53	96	0	198	32	18	19	29	1.96
1239009--1239042	17	2.0	17	88	0	50	26	2	2	67	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1240445--1240480	11	3.3	11	88	0	54	30	0	0	69	0.89
1241524--1241563	21	1.9	21	94	0	71	47	10	0	42	1.37
1241571--1241622	22	2.3	22	83	3	59	48	1	3	46	1.31
1241846--1241882	15	2.5	15	95	0	65	54	0	0	45	1.00
1243533--1243589	26	2.2	26	78	12	64	63	0	1	35	1.05
1244378--1244420	2	21.5	2	80	0	50	44	4	4	46	1.45
1244918--1244951	17	1.9	18	94	5	61	64	0	0	35	0.94
1253445--1253503	23	2.7	23	78	19	63	42	0	0	57	0.98
1256087--1256162	12	6.9	11	75	15	52	39	2	48	9	1.49
1256077--1256195	42	2.8	42	90	0	184	42	3	45	8	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15