genome.fa.s211.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2157208

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  9  of  15  ( 1763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1264030--1264070	13	2.9	14	76	23	50	56	4	2	36	1.34
1266515--1266655	65	2.2	62	79	11	142	51	12	9	26	1.70
1266672--1266755	17	5.2	16	82	5	107	54	2	0	42	1.13
1266672--1266757	33	2.7	31	84	12	111	53	2	0	44	1.13
1268644--1268668	13	1.9	13	100	0	50	48	0	4	48	1.20
1269168--1269598	109	4.0	109	80	4	415	35	17	15	31	1.91
1269167--1269595	216	2.0	218	81	4	510	35	16	15	31	1.91
1269212--1269697	109	4.5	108	76	8	364	34	17	15	32	1.91
1272822--1272865	18	2.4	18	88	0	70	40	11	2	45	1.53
1276002--1276220	34	6.5	34	85	2	280	25	8	26	40	1.83
1276002--1276220	102	2.2	101	89	1	339	25	8	26	40	1.83
1280627--1280845	34	6.5	34	83	2	253	26	7	25	40	1.82
1280627--1280845	102	2.2	101	87	1	312	26	7	25	40	1.82
1285671--1285721	22	2.3	23	83	10	70	47	0	0	52	1.00
1289163--1289204	22	1.9	22	90	0	66	47	9	4	38	1.57
1291907--1291953	2	23.5	2	100	0	94	48	0	0	51	1.00
1295180--1295226	22	2.2	21	84	3	58	42	2	6	48	1.40
1295787--1295853	16	4.2	16	69	7	64	58	8	5	26	1.52
1297395--1297435	12	3.0	15	83	16	54	26	0	0	73	0.84
1297677--1297739	16	3.7	18	75	24	57	36	0	1	61	1.05
1297898--1297949	16	3.3	15	84	7	68	55	5	0	38	1.24
1302497--1302690	88	2.2	88	95	0	343	41	21	24	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1303139--1303169	12	2.5	13	94	5	55	35	3	0	61	1.12
1303341--1303425	28	3.0	28	81	6	82	42	0	0	57	0.98
1303366--1303447	36	2.2	36	78	6	85	47	0	0	52	1.00
1303378--1303442	17	3.8	17	72	9	60	49	0	0	50	1.00
1303364--1303551	102	1.8	106	86	5	278	44	1	1	53	1.14
1304055--1304101	14	2.9	15	81	18	51	59	0	0	40	0.97
1304055--1304176	32	3.8	33	73	12	103	56	0	0	42	1.05
1304088--1304147	26	2.3	27	80	16	72	53	1	0	45	1.10
1304141--1304196	22	2.6	22	80	2	69	53	1	0	44	1.11
1304055--1304176	50	2.6	49	73	15	121	56	0	0	42	1.05
1307547--1307602	23	2.4	23	72	0	58	55	1	5	37	1.33
1307931--1308054	56	2.2	57	82	7	144	39	4	3	52	1.39
1308429--1308461	11	3.0	11	90	0	57	69	0	0	30	0.88
1308446--1308521	32	2.3	34	77	13	86	56	2	1	39	1.21
1309025--1309098	5	14.0	5	75	10	58	68	0	1	29	0.97
1309024--1309104	11	7.5	11	73	8	60	66	0	1	32	0.99
1309025--1309098	16	4.7	16	69	18	57	68	0	1	29	0.97
1309028--1309104	38	2.0	38	82	9	95	67	0	1	31	0.99
1309133--1309176	20	2.2	20	88	11	65	50	0	0	50	1.00
1315095--1315128	18	1.9	17	88	5	50	50	5	2	41	1.42
1315540--1315672	34	3.9	34	87	0	185	30	3	19	47	1.64
1315545--1315679	68	2.0	68	92	0	225	29	2	20	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1315993--1316032	21	1.9	21	89	0	62	27	17	22	32	1.96
1319421--1319563	34	4.2	34	81	0	169	22	6	27	43	1.79
1319421--1319564	68	2.1	68	93	0	243	22	6	27	43	1.79
1319874--1319999	10	12.6	10	67	12	62	34	1	1	62	1.14
1319899--1319923	13	1.9	13	100	0	50	44	0	0	56	0.99
1319883--1319986	41	2.6	41	82	10	108	35	1	1	60	1.19
1319898--1319987	40	2.2	41	83	9	114	35	2	1	61	1.16
1320007--1320089	35	2.4	36	75	15	84	44	0	1	54	1.08
1320302--1320338	18	2.0	18	94	5	65	51	0	0	48	1.00
1320303--1320359	19	3.2	18	83	11	64	49	1	0	49	1.11
1320350--1320380	13	2.4	13	94	0	53	51	3	0	45	1.17
1320639--1320723	27	3.0	28	73	18	79	62	0	0	37	0.96
1320675--1320721	5	9.8	5	78	17	55	63	0	0	36	0.94
1320686--1320724	18	2.2	18	90	9	62	66	0	0	33	0.92
1320661--1320723	29	2.2	30	88	8	96	63	0	0	36	0.95
1320675--1320721	9	4.9	10	82	15	55	63	0	0	36	0.94
1321507--1321565	6	9.8	6	73	14	50	35	0	0	64	0.94
1321758--1321788	2	16.0	2	93	6	55	51	0	0	48	1.00
1322746--1322834	39	2.3	38	79	11	90	44	1	1	52	1.15
1323083--1323107	2	12.5	2	100	0	50	52	0	0	48	1.00
1323249--1323296	9	5.8	9	83	11	59	52	0	0	47	1.00
1323249--1323293	17	2.8	17	90	6	67	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1323857--1324013	28	5.4	29	72	18	89	57	0	0	42	1.03
1323894--1323999	45	2.3	45	82	12	128	59	0	0	40	0.97
1323904--1324014	35	3.1	38	76	16	94	58	0	0	41	0.98
1323851--1324000	37	4.0	37	73	16	107	58	0	0	41	1.03
1323854--1324011	81	2.0	81	82	10	200	57	0	0	41	1.03
1324204--1324228	13	1.9	13	100	0	50	80	0	0	20	0.72
1325245--1325281	19	1.9	19	94	0	65	45	5	8	40	1.56
1331072--1331105	4	8.5	4	100	0	68	50	0	0	50	1.00
1331427--1331492	18	3.7	18	74	11	64	43	1	0	54	1.09
1332255--1332292	2	19.0	2	100	0	76	50	0	0	50	1.00
1335161--1335193	2	16.5	2	100	0	66	51	0	0	48	1.00
1335193--1335225	2	16.5	2	100	0	66	51	0	48	0	1.00
1336810--1336865	27	2.1	26	86	3	76	46	0	1	51	1.11
1337391--1337430	21	1.9	21	89	0	62	42	2	2	52	1.28
1342173--1342210	13	2.9	13	81	14	51	47	0	7	44	1.32
1342307--1342353	21	2.2	22	81	11	53	29	23	4	42	1.73
1343556--1343613	28	2.1	28	93	0	98	44	5	15	34	1.69
1347540--1347575	2	18.0	2	100	0	72	50	0	50	0	1.00
1349278--1349311	16	2.1	16	100	0	68	5	26	35	32	1.81
1349231--1349360	48	2.7	48	80	2	136	11	17	31	39	1.86
1349286--1349360	16	4.7	16	76	0	69	9	18	36	36	1.83
1349286--1349360	32	2.3	32	83	0	96	9	18	36	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1349366--1349419	23	2.3	23	87	0	81	11	11	38	38	1.76
1349748--1349791	12	4.1	11	80	13	56	59	0	0	40	0.98
1349749--1349790	23	2.0	20	86	13	57	57	0	0	42	0.99
1349754--1349801	24	2.0	23	84	11	62	54	2	0	43	1.12
1350207--1350293	20	4.3	21	74	8	74	26	22	14	35	1.94
1350207--1350296	40	2.2	40	76	7	94	27	22	14	35	1.93
1352378--1352415	10	3.8	10	89	6	51	7	2	5	84	0.86
1352610--1352639	16	1.9	15	93	6	51	30	16	0	53	1.44
1353137--1353181	17	2.7	17	86	3	65	22	13	11	53	1.71
1353247--1353325	6	14.2	6	67	32	52	46	0	0	53	1.00
1353252--1353324	27	2.8	26	95	4	121	45	0	0	54	0.99
1353264--1353316	12	4.1	12	84	15	70	45	0	0	54	0.99
1353886--1353934	21	2.4	20	83	6	62	53	2	2	42	1.24
1353989--1354014	12	2.2	12	100	0	52	38	0	0	61	0.96
1354091--1354187	17	6.0	17	65	27	52	42	0	0	57	0.98
1354091--1354154	30	2.1	30	85	5	85	40	0	0	59	0.97
1354100--1354172	30	2.8	24	73	25	67	39	0	0	60	0.97
1354515--1354557	6	7.2	6	97	0	77	0	53	0	46	1.00
1356703--1356790	32	2.8	32	79	6	81	45	7	10	36	1.67
1358804--1358846	22	2.0	22	90	9	70	44	0	0	55	0.99
1359720--1359745	9	2.9	9	100	0	52	34	0	0	65	0.93
1359831--1359883	27	2.0	27	82	14	65	47	1	1	49	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1360870--1360908	18	2.2	18	85	0	51	20	0	61	17	1.34
1360973--1361014	18	2.3	18	92	8	68	16	0	69	14	1.20
1361090--1361141	21	2.5	21	84	6	61	9	1	67	21	1.29
1363400--1363441	15	3.0	14	83	16	52	71	0	0	28	0.86
1363381--1363449	29	2.5	27	80	13	70	69	0	0	30	0.89
1364844--1364884	16	2.5	17	84	11	59	60	7	2	29	1.36
1364858--1364939	26	3.2	26	82	5	96	57	8	0	34	1.29
1375095--1375122	14	2.0	14	100	0	56	57	0	14	28	1.38
1379999--1380068	24	2.8	25	89	6	99	44	25	8	21	1.80
1380053--1380123	27	2.6	27	88	6	99	46	23	7	22	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15