genome.fa.s211.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2157208

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2073912--2074003	10	9.1	10	67	22	50	40	2	2	55	1.24
2073939--2074010	18	3.8	18	74	13	72	40	2	2	54	1.29
2074348--2074376	6	4.8	6	100	0	58	0	0	17	82	0.66
2074639--2074664	3	8.7	3	100	0	52	65	0	0	34	0.93
2075543--2075593	21	2.2	24	78	21	65	50	0	1	47	1.12
2075748--2075790	21	2.0	21	86	8	61	67	0	4	27	1.10
2076018--2076078	13	4.4	13	71	15	50	59	0	1	39	1.08
2076031--2076081	16	3.4	16	72	22	56	58	0	1	39	1.09
2081260--2081351	31	2.7	34	80	14	93	43	1	2	53	1.20
2081264--2081337	36	2.0	38	84	10	100	41	1	2	54	1.23
2081342--2081387	19	2.5	19	80	19	53	32	2	0	65	1.05
2081350--2081388	19	1.9	19	90	10	60	30	2	0	66	1.05
2084788--2084922	8	15.9	8	68	19	51	30	0	4	65	1.12
2084859--2084934	27	2.8	28	82	11	79	26	1	5	67	1.20
2084796--2084945	17	8.8	17	66	18	64	30	0	4	64	1.16
2084855--2084949	42	2.3	42	77	17	99	26	1	4	68	1.14
2085817--2085844	2	14.0	2	100	0	56	50	0	0	50	1.00
2086452--2086522	38	1.9	36	83	11	90	52	0	0	47	1.00
2086645--2086677	16	2.1	16	94	0	57	30	0	6	63	1.18
2087170--2087219	20	2.5	19	83	6	55	42	2	0	56	1.11
2089568--2089614	21	2.2	21	88	0	67	23	21	2	53	1.57
2089576--2089620	21	2.1	21	87	0	63	24	22	2	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2092052--2092089	2	19.0	2	100	0	76	50	0	0	50	1.00
2092461--2092500	2	20.0	2	89	0	62	50	0	0	50	1.00
2092544--2092579	2	18.0	2	100	0	72	50	0	0	50	1.00
2092936--2092999	20	3.2	21	70	20	57	46	1	0	51	1.10
2092947--2092981	14	2.5	14	85	0	52	45	0	0	54	0.99
2093692--2093735	22	2.0	23	86	13	65	59	0	2	38	1.10
2093663--2093747	29	3.0	28	72	14	77	62	0	1	36	1.03
2095834--2095872	17	2.3	17	90	0	60	64	2	0	33	1.08
2096399--2096430	2	16.0	2	100	0	64	50	0	0	50	1.00
2096546--2096576	15	2.1	15	100	0	62	58	0	0	41	0.98
2097045--2097078	15	2.3	15	94	0	59	61	0	35	2	1.11
2100712--2100805	33	2.8	33	95	0	161	40	9	14	35	1.79
2100740--2100809	20	3.8	20	70	24	73	38	10	14	37	1.79
2101927--2101964	16	2.3	17	90	4	60	34	0	2	63	1.09
2103314--2103383	30	2.3	29	90	7	113	45	1	4	48	1.30
2103333--2103380	15	3.2	15	74	11	53	50	0	4	45	1.21
2103420--2103539	39	3.0	39	72	14	113	51	0	0	46	1.12
2103390--2103539	82	1.9	77	81	12	178	51	0	0	47	1.10
2110559--2110601	18	2.5	17	82	14	52	16	4	0	79	0.90
2110750--2110784	16	2.3	15	95	5	61	51	0	2	45	1.16
2110959--2111015	30	2.0	27	86	10	78	38	1	14	45	1.55
2117408--2117482	20	3.8	20	80	3	80	40	12	13	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2117405--2117482	40	2.0	39	87	2	111	39	12	12	34	1.82
2118090--2120297	59	38.8	57	85	6	1735	23	16	32	26	1.96
2118090--2120297	28	77.5	28	86	5	1814	23	16	32	26	1.96
2119532--2120297	27	28.0	27	90	1	1082	28	14	33	23	1.93
2119532--2120297	137	5.6	135	89	1	1091	28	14	33	23	1.93
2121619--2121670	23	2.2	24	82	3	61	5	11	11	71	1.31
2127785--2127833	23	2.1	23	100	0	98	67	8	8	16	1.40
2127785--2127839	23	2.5	22	94	5	94	61	9	10	18	1.54
2128754--2128825	20	3.6	19	75	7	72	40	9	13	36	1.78
2128751--2128827	40	1.9	39	89	2	118	40	11	12	35	1.80
2130689--2130723	4	8.8	4	93	0	61	28	0	20	51	1.47
2131367--2131415	16	2.9	17	78	9	55	42	2	2	53	1.24
2131416--2131468	18	2.9	17	86	8	70	69	0	1	28	0.99
2131891--2131941	20	2.5	21	78	12	61	37	0	3	58	1.16
2131998--2132052	14	4.1	14	73	17	53	41	1	0	56	1.10
2131994--2132059	26	2.6	25	82	4	78	45	1	0	53	1.09
2131994--2132059	25	2.5	26	80	7	71	45	1	0	53	1.09
2132792--2132843	25	2.1	25	85	3	70	44	0	1	53	1.11
2135508--2135546	18	2.1	19	86	13	55	64	2	0	33	1.08
2135904--2135960	20	2.9	19	77	10	62	49	0	0	50	1.00
2137341--2137526	83	2.2	83	83	4	232	46	6	1	44	1.40
2138982--2139017	18	2.1	17	90	10	56	38	11	8	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2138983--2139022	18	2.2	18	86	8	55	42	12	7	37	1.71
2140282--2140349	30	2.2	30	89	7	102	42	11	4	41	1.61
2140223--2140410	103	1.8	101	83	7	245	42	10	7	39	1.68
2140540--2140585	24	1.9	24	82	8	58	39	8	0	52	1.33
2140957--2141001	8	5.4	8	79	10	54	48	4	4	42	1.43
2141074--2141114	17	2.5	17	88	4	57	68	0	7	24	1.15
2141088--2141130	14	3.0	14	80	12	52	69	0	9	20	1.15
2141985--2142011	2	13.5	2	100	0	54	51	0	0	48	1.00
2142620--2142670	16	3.3	15	86	8	66	54	7	3	33	1.47
2142629--2142702	16	4.7	15	85	9	69	59	8	1	31	1.35
2142629--2142726	32	3.1	32	75	11	101	56	10	4	29	1.51
2142979--2143058	20	4.3	20	71	24	68	37	3	0	58	1.16
2143022--2143068	24	1.9	24	86	4	67	40	2	0	57	1.11
2146724--2146853	58	2.2	58	86	2	181	24	13	8	53	1.66
2151735--2151767	14	2.4	14	94	0	57	51	6	3	39	1.42
2152126--2152161	2	18.0	2	100	0	72	50	0	50	0	1.00
2155950--2155988	2	20.5	2	89	10	64	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!