genome.fa.s211.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2157208

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  12  of  15  ( 1763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1692902--1692959	20	2.8	19	85	12	71	87	8	1	1	0.67
1692902--1692960	1	59.0	1	75	0	55	88	8	1	1	0.66
1694035--1694566	55	9.3	55	83	9	615	27	28	20	24	1.99
1695429--1695455	13	2.1	13	100	0	54	40	14	14	29	1.86
1695499--1695540	21	2.0	21	100	0	84	42	9	19	28	1.82
1695570--1695611	19	2.1	21	91	8	70	33	23	9	33	1.87
1697903--1698066	51	3.2	50	67	11	127	29	25	12	32	1.92
1697903--1698085	101	1.8	102	89	3	289	28	24	11	34	1.90
1697927--1698096	50	3.4	50	67	11	132	30	23	9	36	1.87
1697903--1698117	101	2.1	102	83	4	265	29	24	11	34	1.91
1698097--1698149	26	2.0	26	92	0	88	28	35	16	18	1.93
1707806--1708336	79	6.8	79	78	10	425	33	14	24	27	1.95
1707828--1708336	158	3.3	154	83	7	568	33	15	24	27	1.95
1710706--1710760	20	2.8	20	86	5	76	41	12	16	29	1.85
1712691--1712788	28	3.4	28	75	15	99	27	21	26	24	1.99
1712688--1712809	60	2.0	60	90	0	190	28	18	25	27	1.98
1712765--1713259	79	6.3	79	77	10	381	37	14	21	26	1.92
1712839--1713259	157	2.7	154	78	7	445	36	14	21	26	1.92
1712748--1713259	236	2.2	235	81	7	592	36	14	21	26	1.93
1713219--1713288	28	2.5	28	85	0	95	28	17	25	28	1.97
1717280--1717321	15	2.8	15	92	0	75	40	14	11	33	1.82
1721070--1721246	88	2.0	87	96	1	327	31	14	12	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1723191--1723268	16	4.9	16	77	0	75	10	15	28	46	1.78
1723168--1723271	48	2.2	48	81	6	113	10	15	31	42	1.81
1723452--1723491	18	2.2	18	90	0	62	50	0	2	47	1.14
1723638--1723681	10	4.2	10	78	21	54	59	0	0	40	0.98
1723638--1723681	12	4.1	11	80	13	56	59	0	0	40	0.98
1723639--1723680	23	2.0	22	86	13	61	57	0	0	42	0.99
1724170--1724200	16	2.0	15	93	6	53	29	12	0	58	1.35
1724320--1724364	3	15.3	3	90	4	74	66	0	2	31	1.04
1724319--1724376	17	3.6	16	84	11	64	65	1	3	29	1.19
1724723--1724795	16	4.5	17	83	6	55	12	20	27	39	1.88
1725217--1725274	20	2.9	20	87	7	91	34	12	15	37	1.85
1725219--1725290	20	3.6	19	77	17	67	33	13	15	37	1.87
1725410--1725450	20	2.0	20	95	0	73	31	14	14	39	1.87
1727118--1727162	25	1.9	22	86	13	63	31	0	0	68	0.89
1727850--1727884	3	11.7	3	93	0	61	31	0	2	65	1.07
1730063--1730109	24	1.9	25	91	4	78	72	6	0	21	1.07
1730216--1730281	32	2.0	35	82	8	84	1	27	3	68	1.13
1731989--1732035	12	4.0	12	88	2	69	31	2	0	65	1.04
1733785--1733841	22	2.5	24	72	16	59	49	5	1	43	1.35
1736080--1736127	2	24.0	2	95	0	87	47	0	2	50	1.12
1736782--1736817	2	18.0	2	100	0	72	50	0	0	50	1.00
1738460--1738501	22	2.0	22	86	9	61	59	2	4	33	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1739294--1739367	37	2.0	38	84	7	98	33	1	0	64	1.02
1739355--1739402	18	2.6	19	77	9	55	41	0	2	56	1.11
1740022--1740069	18	2.7	19	87	12	75	62	0	0	37	0.95
1744032--1744070	20	2.0	20	84	0	51	64	0	0	35	0.94
1744193--1744226	15	2.2	15	94	5	59	85	5	0	8	0.75
1744784--1744818	4	9.0	4	93	6	63	48	0	0	51	1.00
1745996--1746054	30	2.0	30	90	6	93	42	0	0	57	0.98
1745987--1746065	15	5.5	15	70	18	53	44	0	0	55	0.99
1746027--1746078	21	2.5	21	83	0	68	46	0	0	53	1.00
1746048--1746078	15	2.0	16	93	6	55	48	0	0	51	1.00
1747536--1747577	9	4.8	9	77	16	52	26	2	2	69	1.13
1747528--1747602	16	4.6	16	77	12	62	24	1	2	72	1.06
1751645--1751742	32	3.0	32	95	1	169	34	11	17	36	1.85
1751643--1751740	19	5.8	18	71	28	90	33	11	17	37	1.85
1751665--1751721	13	3.9	13	74	24	51	35	12	17	35	1.87
1751783--1751807	13	1.9	13	100	0	50	32	16	16	36	1.90
1751816--1751996	52	3.5	52	96	0	335	37	17	16	28	1.92
1752677--1752712	17	2.1	17	100	0	72	30	11	5	52	1.59
1757202--1757455	126	2.0	124	90	3	393	24	20	19	35	1.96
1757700--1757769	34	2.1	34	94	0	122	22	18	24	34	1.96
1757882--1757911	15	2.0	15	93	0	51	26	30	26	16	1.97
1757939--1758193	126	2.0	125	96	0	465	24	21	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1758290--1758328	15	2.6	15	95	0	69	30	33	23	12	1.92
1767217--1767315	43	2.3	43	84	5	119	48	9	3	39	1.50
1769649--1769680	3	10.7	3	93	0	55	34	31	0	34	1.58
1774572--1774603	7	4.6	7	92	0	55	71	25	3	0	1.00
1775373--1775435	28	2.4	25	79	15	65	50	0	1	47	1.10
1776438--1776465	2	14.0	2	100	0	56	50	0	0	50	1.00
1776858--1776942	20	4.2	20	65	24	54	47	0	1	51	1.08
1776855--1776945	15	6.0	16	75	14	77	47	0	1	51	1.07
1777004--1777045	15	2.8	15	79	13	50	33	0	9	57	1.31
1777081--1777124	16	2.8	16	92	0	79	40	11	0	47	1.39
1777193--1777237	20	2.3	20	88	3	65	37	0	13	48	1.42
1778134--1778169	2	18.0	2	94	0	63	47	0	2	50	1.15
1780765--1781113	142	2.5	141	83	4	400	46	8	7	37	1.62
1781845--1781896	20	2.6	20	80	14	54	1	23	1	73	1.04
1781844--1781907	16	3.7	17	76	14	60	1	21	1	75	0.98
1782715--1783199	153	3.2	152	83	3	611	50	9	7	32	1.62
1785071--1785113	18	2.3	19	84	4	52	23	13	16	46	1.83
1789840--1789884	19	2.4	19	92	3	74	24	22	13	40	1.90
1789894--1789924	16	1.9	16	93	0	53	29	0	9	61	1.28
1795235--1795271	2	18.5	2	94	0	65	45	0	2	51	1.15
1795331--1795507	76	2.3	76	82	5	189	42	17	10	29	1.83
1795342--1795505	38	4.3	38	75	3	150	41	17	10	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796272--1796323	20	2.6	20	73	11	52	59	1	1	36	1.19
1796322--1796371	21	2.4	22	80	10	59	40	6	6	48	1.52
1796369--1796414	24	2.0	21	84	12	56	56	4	0	39	1.19
1797276--1797339	31	2.1	31	85	5	85	62	1	0	35	1.05
1798020--1798078	21	2.6	22	77	17	68	57	0	0	42	0.98
1798270--1798332	32	2.1	29	85	14	83	44	1	0	53	1.10
1798323--1798370	19	2.5	21	83	16	68	50	0	0	50	1.00
1798309--1798411	49	2.1	49	82	12	124	52	0	0	47	1.00
1798367--1798406	21	1.9	21	85	10	55	62	0	0	37	0.95
1798453--1798496	18	2.4	19	88	7	65	50	0	0	50	1.00
1798453--1798533	12	6.8	12	76	18	64	46	1	0	51	1.08
1798453--1798533	5	13.5	6	82	11	64	46	1	0	51	1.08
1799700--1799758	3	18.7	3	86	10	82	62	1	3	32	1.21
1799840--1799898	18	3.3	18	95	4	102	50	0	0	49	1.00
1799895--1799934	21	1.9	21	90	10	64	60	0	0	40	0.97
1799846--1799973	46	2.7	49	74	16	126	52	0	0	47	1.00
1799923--1800010	29	3.0	30	79	14	87	54	0	0	45	0.99
1800366--1800439	19	3.8	18	79	15	53	66	1	0	32	1.00
1800391--1800469	5	16.8	5	68	21	55	62	0	0	37	0.96
1800390--1800469	13	5.9	13	74	12	72	62	0	0	37	0.95
1800386--1800486	28	3.5	28	81	12	109	61	0	0	37	1.03
1800414--1800486	20	3.8	18	74	15	51	58	1	0	39	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1800870--1800953	29	3.0	28	77	16	86	42	0	0	57	0.99
1800949--1800976	14	2.0	14	100	0	56	64	0	0	35	0.94
1800934--1800975	22	1.9	22	90	9	68	64	0	0	35	0.94
1800958--1801013	22	2.5	22	83	11	78	42	1	0	55	1.10
1801283--1801339	11	5.0	11	76	16	62	63	0	0	36	0.95
1801283--1801395	35	3.5	31	77	15	106	60	0	0	39	0.97
1801280--1801397	23	5.0	25	70	14	92	59	0	0	40	0.97
1801283--1801397	5	23.6	5	71	14	80	60	0	0	40	0.97
1802753--1802813	15	4.1	14	75	19	52	52	0	1	45	1.10
1802714--1802843	31	4.4	29	71	18	81	53	0	0	45	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15