genome.fa.s211.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2157208

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  3  of  15  ( 1763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257218--257266	8	6.1	8	90	0	71	28	2	0	69	1.00
259018--259052	18	1.9	18	88	0	52	45	0	0	54	0.99
259396--259438	19	2.3	18	84	4	50	39	0	4	55	1.20
259699--259742	20	2.2	20	88	8	63	59	2	4	34	1.30
260445--260482	17	2.4	16	86	8	51	42	2	0	55	1.14
261996--262037	22	1.9	22	85	0	57	45	0	4	50	1.23
261973--262070	25	3.8	26	67	17	69	57	0	2	40	1.10
263321--263347	14	1.9	14	100	0	54	48	7	7	37	1.59
264827--264856	15	1.9	16	93	6	53	53	0	0	46	1.00
265007--265041	16	2.2	16	94	0	61	40	0	0	60	0.97
265007--265053	16	2.9	16	84	6	51	36	2	2	59	1.21
267271--267451	46	4.1	45	83	4	190	2	29	11	55	1.49
267271--267451	91	2.0	93	83	6	235	2	29	11	55	1.49
267271--267451	45	4.1	45	82	7	201	2	29	11	55	1.49
269513--269537	4	6.2	4	100	0	50	72	0	0	28	0.86
273238--273276	2	19.5	2	100	0	78	51	0	48	0	1.00
274737--274772	2	18.0	2	94	0	63	0	2	50	47	1.15
279102--279133	15	2.1	16	94	5	57	15	0	0	84	0.63
279121--279304	19	10.1	17	65	21	63	40	0	1	57	1.12
279147--279233	31	2.6	31	81	15	95	42	0	1	56	1.07
279147--279233	33	2.7	32	83	15	99	42	0	1	56	1.07
279334--279395	13	4.6	13	72	21	56	32	1	0	66	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279673--279743	19	3.1	23	72	27	71	40	0	1	57	1.07
279679--279751	24	3.2	24	72	20	66	42	0	1	56	1.08
279716--279891	31	5.4	31	75	18	146	39	0	1	59	1.09
279712--279897	32	5.5	32	74	15	144	39	0	1	59	1.09
279766--279866	37	2.5	39	76	15	100	37	0	1	59	1.15
279872--279896	10	2.5	10	100	0	50	28	0	0	72	0.86
280205--280243	18	2.2	18	90	9	62	48	0	5	46	1.24
280205--280251	18	2.8	17	81	15	53	46	0	4	48	1.21
280280--280314	17	1.9	19	88	11	56	37	2	0	60	1.12
280455--280498	21	2.1	21	87	8	63	43	0	0	56	0.99
289583--289664	31	2.6	31	73	16	80	54	0	1	43	1.07
289795--289846	19	2.5	20	78	18	52	59	1	0	38	1.08
291012--291060	22	2.4	22	86	10	68	57	0	0	42	0.99
291012--291072	22	3.1	18	78	17	59	52	0	0	47	1.00
291071--291115	15	2.9	16	87	9	58	55	0	0	44	0.99
291086--291133	20	2.5	19	83	6	53	54	0	2	43	1.12
291071--291143	38	2.0	36	83	5	92	53	0	1	45	1.09
291165--291215	15	3.3	15	88	2	75	43	0	0	56	0.99
291492--291521	3	10.0	3	100	0	60	66	0	33	0	0.92
299869--299902	9	3.6	10	84	15	54	64	0	5	29	1.17
300133--300203	23	3.2	23	76	21	71	52	11	0	36	1.38
300183--300231	22	2.2	22	82	7	55	51	6	2	40	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306768--306816	21	2.3	21	82	10	55	30	0	2	67	1.02
306974--306999	2	13.0	2	100	0	52	50	0	0	50	1.00
307670--307713	23	1.9	23	85	0	61	59	6	4	29	1.44
307836--307878	19	2.4	18	77	11	52	25	2	0	72	0.97
308371--308402	3	10.7	3	100	0	64	68	0	0	31	0.90
308613--308659	14	3.1	15	75	9	51	48	0	6	44	1.28
308659--308697	18	2.2	18	86	9	53	51	0	0	48	1.00
308677--308749	27	2.7	27	87	8	96	60	0	0	39	0.97
308656--308731	16	4.9	16	69	19	63	59	0	0	40	0.98
308677--308742	22	3.0	22	78	10	73	60	0	0	39	0.97
308696--308746	21	2.5	19	76	17	57	64	0	0	35	0.94
308682--308761	27	3.0	26	85	7	81	60	3	0	36	1.15
309144--309242	33	3.3	30	77	12	96	40	3	6	50	1.42
309188--309250	11	6.2	10	71	22	51	41	0	3	55	1.16
309153--309234	33	2.7	30	85	9	103	40	3	7	48	1.48
309213--309258	21	2.2	20	92	3	74	36	0	0	63	0.95
312085--312133	24	2.0	24	84	8	62	59	0	0	40	0.98
312471--312559	33	2.7	32	86	6	108	42	2	0	55	1.12
312468--312549	25	3.3	24	77	19	80	42	2	0	54	1.13
312907--312963	2	28.5	2	96	0	105	47	0	0	52	1.00
313774--313832	24	2.3	26	78	16	70	37	0	5	57	1.21
324681--324799	52	2.3	52	95	0	211	29	17	19	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324679--324819	52	2.7	51	87	4	203	30	17	19	32	1.95
324808--324832	13	1.9	13	100	0	50	36	16	16	32	1.90
324898--324922	13	1.9	13	100	0	50	32	16	16	36	1.90
324876--324942	33	2.0	33	88	0	98	40	13	11	34	1.81
325757--326154	122	3.3	122	73	15	446	35	15	24	24	1.94
325940--325988	22	2.2	22	96	0	89	32	14	24	28	1.94
325745--326205	239	1.9	239	97	0	877	35	15	24	24	1.94
326118--327975	49	37.8	49	85	5	2531	32	17	26	23	1.96
326050--327970	784	2.4	784	96	2	3449	32	17	26	23	1.96
326050--327975	101	19.5	100	95	3	3051	32	17	26	23	1.96
327980--328033	27	2.0	27	92	0	90	22	14	40	22	1.90
327973--328634	34	20.8	32	77	13	357	32	14	32	21	1.93
328138--328329	61	3.0	61	79	16	217	31	13	34	20	1.92
327973--328294	95	3.3	96	89	5	454	31	13	35	20	1.90
328194--328638	62	6.9	68	88	7	314	33	14	29	22	1.94
328339--328390	27	2.0	26	88	3	77	23	15	36	25	1.93
328303--328425	61	2.0	62	98	1	239	31	13	32	22	1.92
328366--328670	32	9.7	32	80	8	270	31	16	27	24	1.96
328396--328670	62	4.4	61	95	2	417	31	16	27	24	1.96
329631--329661	16	1.9	16	93	0	53	0	6	6	87	0.68
336837--336955	52	2.3	52	95	0	211	29	17	19	33	1.95
336835--336975	52	2.7	51	87	4	203	30	17	19	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336964--336988	13	1.9	13	100	0	50	36	16	16	32	1.90
337054--337078	13	1.9	13	100	0	50	32	16	16	36	1.90
337032--337098	33	2.0	33	88	0	98	40	13	11	34	1.81
338005--338071	33	2.0	33	91	0	107	23	31	17	26	1.97
338994--339045	19	2.7	20	81	3	61	32	13	13	40	1.83
340026--340074	19	2.4	21	80	10	57	44	0	0	55	0.99
340426--340456	16	2.0	15	93	6	53	0	9	0	90	0.46
340429--340453	10	2.5	10	100	0	50	0	8	0	92	0.40
341048--341099	2	26.5	2	92	3	88	48	1	0	50	1.12
341734--341768	2	17.5	2	100	0	70	0	48	0	51	1.00
350543--350577	2	17.5	2	100	0	70	51	0	0	48	1.00
351443--351489	17	2.7	18	81	15	62	44	2	4	48	1.34
351813--351844	15	2.1	16	94	5	57	43	3	0	53	1.16
351842--351889	13	3.7	13	72	10	53	50	0	0	50	1.00
352537--352591	28	2.0	28	92	7	94	41	0	0	58	0.98
352599--352659	10	6.1	10	73	21	56	44	0	0	55	0.99
352534--352657	41	3.0	42	77	11	125	47	0	0	52	1.00
352621--352660	18	2.1	19	90	9	64	45	0	0	55	0.99
352593--352658	30	2.2	32	86	8	93	48	0	0	51	1.00
353258--353351	42	2.2	43	80	16	115	43	1	1	54	1.14
353363--353421	30	1.9	32	89	6	95	52	0	3	44	1.17
354375--354442	35	1.9	35	88	5	102	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355806--355856	26	2.0	26	96	0	93	33	11	23	31	1.91
356898--356922	4	6.2	4	100	0	50	0	24	0	76	0.80
356870--357069	98	2.0	100	93	3	341	26	13	10	50	1.73
357192--357609	231	1.8	231	84	4	574	28	15	15	40	1.87
363754--363792	17	2.2	19	86	9	55	64	0	0	35	0.94
364214--364244	2	16.0	2	93	6	55	48	0	0	51	1.00
364592--364643	22	2.4	21	78	12	52	57	0	1	40	1.10
364608--364648	9	3.6	12	78	21	52	53	0	0	46	1.00
364610--364654	21	2.1	22	91	4	74	48	0	0	51	1.00
365061--365116	26	2.2	26	84	9	71	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15