genome.fa.s215.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Length:  2124891

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  1  of  16  ( 1860 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4929--5047	42	2.8	42	92	0	193	8	46	2	42	1.47
4962--5037	12	6.9	11	75	15	52	9	48	2	39	1.49
4953--5038	24	3.8	24	72	17	85	10	45	2	41	1.51
4944--5014	18	3.6	18	69	20	52	9	43	2	43	1.52
34083--34158	12	6.9	11	75	15	52	39	2	48	9	1.49
34082--34167	24	3.8	24	72	17	85	41	2	45	10	1.51
34073--34191	42	2.8	42	90	0	184	43	2	45	8	1.47
34148--34197	18	2.8	18	81	6	57	46	4	44	6	1.47
39512--39630	42	2.8	42	92	0	193	8	46	2	42	1.47
39545--39620	12	6.9	11	75	15	52	9	48	2	39	1.49
39536--39621	24	3.8	24	72	17	85	10	45	2	41	1.51
39527--39597	18	3.6	18	69	20	52	9	43	2	43	1.52
44000--44054	20	2.7	21	83	8	69	38	10	18	32	1.85
49105--49212	42	2.6	42	84	0	144	43	2	41	12	1.56
50576--50618	14	2.9	15	75	6	52	58	2	32	6	1.38
62272--62319	17	2.8	17	75	12	53	50	10	0	39	1.37
68195--68234	21	1.9	21	89	0	62	32	20	5	42	1.73
69008--69070	30	2.1	30	96	0	117	53	9	6	30	1.58
77200--77481	154	1.8	155	84	3	390	31	9	9	48	1.68
78808--78862	19	2.8	19	83	2	65	32	14	18	34	1.91
78831--78895	33	2.0	33	85	11	89	35	13	18	32	1.90
85018--85042	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86889--86931	20	2.1	21	95	4	79	48	0	25	25	1.51
87555--87610	19	2.8	20	81	5	69	32	19	16	32	1.94
99355--99938	155	3.8	154	82	5	581	39	21	15	23	1.92
100063--100334	141	1.9	141	84	10	369	41	12	11	34	1.80
101400--101434	12	2.9	12	91	0	52	0	20	0	80	0.72
101391--101432	21	2.0	21	90	4	66	0	19	2	78	0.86
101743--102464	165	4.4	164	76	12	444	51	8	9	30	1.64
101938--102465	167	3.3	156	78	12	527	51	8	9	30	1.64
103416--103632	85	2.6	84	80	5	215	45	13	21	19	1.84
103775--103973	47	4.3	47	82	5	233	40	15	21	22	1.91
103739--103996	94	2.8	92	78	6	261	41	15	21	22	1.90
103775--103996	47	4.7	47	81	6	227	40	15	21	22	1.90
103967--104106	35	4.0	35	82	3	165	45	13	21	20	1.85
104055--104163	56	1.9	57	87	5	159	42	13	22	22	1.88
104111--104355	36	6.9	35	86	2	285	42	10	23	24	1.85
104019--104198	92	2.0	92	86	4	256	43	11	22	22	1.85
104111--104355	71	3.5	71	84	5	307	42	10	23	24	1.85
104298--104413	58	2.0	58	84	3	153	45	11	18	25	1.82
104367--104549	35	5.2	35	81	6	192	41	9	24	24	1.85
104753--104803	25	2.0	25	100	0	102	50	0	29	19	1.48
104809--104981	92	1.9	91	83	9	226	30	14	26	29	1.95
105499--105713	87	2.5	87	79	0	223	45	13	17	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107208--107232	13	1.9	13	100	0	50	36	16	16	32	1.90
107295--107319	13	1.9	13	100	0	50	32	16	16	36	1.90
107328--107508	52	3.5	52	98	0	344	34	19	17	28	1.95
111636--111662	10	2.7	10	100	0	54	0	0	22	77	0.76
121350--121476	1	127.0	1	76	0	119	88	9	2	0	0.61
121348--121476	18	7.5	17	81	7	145	87	10	2	0	0.63
122937--123142	30	7.1	30	85	3	226	31	31	16	20	1.95
123129--123340	52	4.2	52	75	13	199	24	25	16	33	1.96
123144--123233	43	2.1	43	91	0	144	26	25	17	30	1.98
123956--123990	16	2.2	16	100	0	70	22	0	11	65	1.24
125500--126196	232	3.0	232	96	0	1270	32	13	8	45	1.74
128443--128493	19	2.5	21	87	12	79	62	0	1	35	1.06
128730--128795	21	3.1	21	80	4	71	39	6	0	54	1.25
129858--129911	16	3.4	16	82	2	56	62	1	0	35	1.06
132555--132605	20	2.6	20	87	3	68	27	13	19	39	1.90
132575--132975	195	2.1	195	99	0	784	29	18	15	36	1.92
133204--133238	8	4.5	8	96	3	63	77	0	0	22	0.78
134361--134388	2	14.0	2	100	0	56	50	0	0	50	1.00
136337--136407	34	2.1	34	100	0	142	38	14	14	33	1.86
144558--144633	32	2.4	32	80	8	93	57	7	2	31	1.41
144567--144625	16	3.8	16	79	2	66	57	5	3	33	1.37
145398--145431	12	2.8	12	90	4	50	17	0	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145396--145432	18	2.0	19	94	5	67	18	0	0	81	0.70
146166--146197	2	16.0	2	100	0	64	50	0	0	50	1.00
147020--147071	22	2.4	21	78	12	52	36	0	3	59	1.16
147112--147145	18	1.9	17	88	5	50	35	2	0	61	1.11
147330--147408	35	2.3	33	79	14	88	49	0	3	46	1.19
149776--149800	12	2.1	12	100	0	50	8	0	40	52	1.31
152073--152109	7	5.3	7	93	0	65	72	10	13	2	1.21
152073--152116	14	3.1	14	81	12	54	70	11	11	6	1.33
153518--153558	20	2.1	19	86	4	55	36	0	7	56	1.27
153675--153729	26	2.3	23	78	9	56	40	0	0	60	0.97
153691--153737	23	2.1	21	81	14	51	40	2	0	57	1.11
156689--156742	28	2.0	27	92	3	90	46	7	7	38	1.60
157360--157408	24	2.0	25	84	4	64	73	0	10	16	1.09
164468--164706	75	3.2	73	73	9	223	26	18	14	40	1.89
164490--164696	73	2.8	73	81	5	238	27	18	13	40	1.88
167153--167225	38	1.9	38	86	10	105	57	0	1	41	1.07
167181--167235	28	2.0	27	82	3	65	56	0	1	41	1.10
174317--174357	14	2.7	15	88	11	66	63	4	0	31	1.15
176545--176580	2	18.0	2	100	0	72	50	0	0	50	1.00
181813--181861	21	2.4	20	83	12	64	57	0	6	36	1.24
184449--184627	82	2.2	81	83	2	214	35	19	15	29	1.93
184477--184629	82	1.9	82	88	0	234	33	20	16	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185253--185341	27	3.3	27	78	7	92	39	7	3	49	1.49
185253--185321	28	2.5	27	79	9	77	40	10	2	46	1.53
185305--185362	13	4.3	13	79	16	64	43	1	5	50	1.35
185279--185362	41	2.0	41	84	4	107	41	5	4	47	1.49
185325--185448	28	4.6	28	70	12	89	37	10	4	47	1.59
185432--185461	13	2.3	13	94	0	51	30	6	3	60	1.39
186720--186747	3	9.3	3	100	0	56	35	0	0	64	0.94
186909--186950	17	2.4	19	84	15	63	50	0	0	50	1.00
186909--186950	18	2.4	16	88	11	57	50	0	0	50	1.00
187222--187255	18	1.9	17	88	5	50	38	0	2	58	1.13
187370--187417	15	2.9	18	78	15	50	45	2	2	50	1.25
189800--189876	28	2.8	28	86	4	93	22	18	35	24	1.96
189859--190028	45	3.4	49	76	14	161	31	12	26	29	1.93
190058--190132	27	2.7	28	87	6	100	22	18	33	25	1.97
190118--190237	51	2.3	51	83	9	154	35	11	20	31	1.89
192602--192627	13	2.0	13	100	0	52	38	15	15	30	1.88
192672--192732	32	1.9	32	89	0	95	39	19	8	32	1.81
192667--192733	19	3.8	19	70	22	65	38	17	8	34	1.82
193362--193390	15	1.9	15	100	0	58	34	13	3	48	1.60
194289--194443	20	6.7	20	69	26	94	29	16	9	44	1.80
194279--194375	50	2.0	49	95	2	176	26	16	9	47	1.77
194289--194443	71	2.2	71	92	1	267	29	16	9	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196547--196614	27	2.5	27	92	4	111	26	30	14	27	1.95
196572--196804	98	2.4	98	88	1	333	27	24	14	33	1.94
203058--203122	33	2.0	33	93	0	112	44	12	12	30	1.79
203057--203102	21	2.2	21	84	0	56	41	13	13	32	1.82
205668--205693	13	2.0	13	100	0	52	30	15	15	38	1.88
205648--205711	32	2.0	33	93	3	112	28	12	15	43	1.83
205648--205711	19	3.6	19	72	25	68	28	12	15	43	1.83
207751--207793	20	2.1	20	82	4	50	9	27	44	18	1.80
208234--208271	13	2.9	13	92	0	58	31	13	18	36	1.89
209932--209986	20	2.8	19	88	5	74	41	16	12	29	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16