genome.fa.s215.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Length:  2124891

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  4  of  16  ( 1860 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532398--533038	71	9.5	69	83	10	724	32	12	34	20	1.90
532398--533038	34	19.0	33	80	11	646	32	12	34	20	1.90
532403--533040	141	4.7	137	84	9	771	32	12	34	20	1.90
532763--533010	61	3.9	61	85	6	327	31	13	33	21	1.92
532863--532976	27	4.0	26	71	21	93	28	14	34	22	1.94
532925--532979	28	2.0	27	85	3	74	27	14	34	23	1.94
532830--533072	122	2.0	122	80	8	271	31	15	30	22	1.94
534096--534128	14	2.5	14	90	9	52	0	12	0	87	0.53
541291--541411	52	2.3	52	97	0	224	28	18	18	34	1.94
541291--541431	52	2.7	51	90	4	212	30	17	18	33	1.94
541420--541444	13	1.9	13	100	0	50	36	16	16	32	1.90
541510--541534	13	1.9	13	100	0	50	32	16	16	36	1.90
541488--541554	33	2.0	33	88	0	98	40	13	11	34	1.81
542422--542743	55	5.8	55	73	13	266	36	14	23	25	1.93
542420--542578	49	3.1	49	77	6	156	35	15	23	25	1.94
542358--542742	171	2.2	173	96	1	711	36	14	23	24	1.93
542658--543028	49	7.7	49	83	8	460	32	17	25	24	1.97
542657--543029	92	3.9	93	91	6	570	31	17	25	24	1.97
543092--543732	71	9.5	69	83	10	724	32	12	34	20	1.90
543092--543732	34	19.0	33	80	11	646	32	12	34	20	1.90
543097--543734	141	4.7	137	84	9	771	32	12	34	20	1.90
543457--543704	61	3.9	61	85	6	327	31	13	33	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543557--543670	27	4.0	26	71	21	93	28	14	34	22	1.94
543619--543673	28	2.0	27	85	3	74	27	14	34	23	1.94
543524--543766	122	2.0	122	80	8	271	31	15	30	22	1.94
544795--544827	14	2.5	14	90	9	52	0	12	0	87	0.53
546695--546815	52	2.3	52	97	0	224	28	18	18	34	1.94
546695--546835	52	2.7	51	90	4	212	30	17	18	33	1.94
546824--546848	13	1.9	13	100	0	50	36	16	16	32	1.90
546914--546938	13	1.9	13	100	0	50	32	16	16	36	1.90
546892--546958	33	2.0	33	88	0	98	40	13	11	34	1.81
551770--551796	13	2.1	13	100	0	54	29	14	14	40	1.86
551750--551813	33	2.0	33	93	3	112	26	12	20	40	1.88
551895--551919	13	1.9	13	100	0	50	36	16	16	32	1.90
554045--554301	32	7.8	33	79	3	259	24	27	9	38	1.86
554045--554301	99	2.6	98	78	8	279	24	27	9	38	1.86
554423--554624	62	3.3	62	82	2	246	29	26	24	19	1.98
554421--554628	31	6.7	31	71	5	145	28	26	25	19	1.99
554695--554793	31	3.2	30	79	16	112	29	28	23	19	1.98
554695--554842	31	4.8	31	75	6	111	29	30	23	16	1.96
554497--554901	211	1.9	210	83	1	515	28	25	24	21	1.99
555777--555830	20	2.6	21	85	2	74	42	12	14	29	1.83
559470--559499	2	15.0	2	100	0	60	50	0	0	50	1.00
570394--570437	19	2.3	19	88	4	61	65	18	4	11	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570851--570883	5	7.0	5	90	10	52	39	0	0	60	0.97
570851--570893	15	3.0	14	86	10	52	34	0	0	65	0.93
576160--576196	15	2.4	16	90	9	67	21	0	0	78	0.75
578087--578158	20	3.8	20	80	12	80	58	0	1	40	1.07
578086--578219	49	2.7	49	75	16	132	56	0	0	42	1.04
578107--578211	10	10.2	10	71	14	63	54	0	0	45	0.99
578133--578222	14	5.9	14	70	19	56	54	0	0	45	0.99
578114--578219	32	3.3	32	77	13	112	55	0	0	44	0.99
578142--578219	16	5.1	14	69	20	50	55	0	0	44	0.99
578484--578528	22	2.0	22	87	8	65	60	0	0	40	0.97
578463--578524	29	2.1	29	87	0	88	56	0	1	41	1.09
581221--581248	13	2.2	13	100	0	56	28	14	14	42	1.84
581311--581341	13	2.4	13	94	0	53	32	19	9	38	1.84
582494--582562	35	2.0	35	88	2	104	27	13	17	42	1.86
595401--595647	79	3.1	79	79	5	268	34	15	24	25	1.95
595631--595725	50	1.9	50	86	0	136	38	13	24	23	1.91
604481--604592	32	3.5	32	91	1	163	31	14	19	34	1.92
604514--604575	19	3.6	19	69	24	64	30	14	20	33	1.93
608102--608154	20	2.7	20	96	0	97	33	20	11	33	1.88
608142--608166	13	1.9	13	100	0	50	36	16	16	32	1.90
608234--608258	13	1.9	13	100	0	50	36	16	16	32	1.90
608216--608279	33	2.0	32	84	3	83	37	12	15	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612260--612285	13	2.0	13	100	0	52	38	15	15	30	1.88
612238--612305	33	2.1	32	91	2	109	32	13	19	35	1.90
612411--612451	20	2.0	20	90	0	64	29	12	19	39	1.88
614779--614803	13	1.9	13	100	0	50	28	16	16	40	1.89
615007--615032	8	3.2	8	100	0	52	61	23	0	15	1.33
620975--621000	13	2.0	13	100	0	52	38	15	15	30	1.88
620953--621020	33	2.1	32	88	2	100	33	13	17	35	1.89
621052--621106	20	2.7	21	85	2	76	27	16	14	41	1.87
621821--621860	12	3.1	12	80	19	53	45	15	10	30	1.78
621820--621867	15	3.4	15	88	11	75	47	14	10	27	1.76
622605--622630	13	2.0	13	100	0	52	38	15	15	30	1.88
625603--625679	21	3.7	21	87	3	102	36	12	15	35	1.86
625715--625782	19	3.9	19	78	21	85	35	11	14	38	1.83
625736--625760	13	1.9	13	100	0	50	36	16	16	32	1.90
625717--625779	32	2.0	32	96	0	117	34	12	15	36	1.86
625822--625847	13	2.0	13	100	0	52	30	15	15	38	1.88
625802--625868	33	2.0	33	88	0	98	25	14	16	43	1.86
628192--628325	51	2.6	51	77	8	144	34	25	8	31	1.87
628336--628698	78	4.6	79	79	3	401	24	28	16	30	1.96
628338--628698	157	2.3	157	94	0	641	24	28	16	30	1.96
641064--641119	1	56.0	1	78	0	58	89	8	1	0	0.56
641063--641116	8	7.0	8	83	6	67	87	11	1	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641064--641119	21	2.7	20	81	10	76	89	8	1	0	0.56
642084--642773	55	12.4	54	81	11	795	27	29	20	22	1.99
642082--642773	171	4.1	167	82	9	842	27	29	20	22	1.99
643468--643506	13	3.0	13	100	0	78	30	15	15	38	1.88
645972--646044	27	2.7	27	87	6	94	23	34	21	20	1.97
645998--646358	78	4.6	78	79	3	386	24	29	16	29	1.97
645998--646358	157	2.3	157	95	0	650	24	29	16	29	1.97
658382--658477	39	2.4	41	78	7	97	44	1	2	52	1.19
658420--658526	20	5.3	21	64	31	56	47	1	0	50	1.11
658435--658524	11	7.9	11	70	17	60	48	2	0	48	1.13
663394--663437	17	2.6	18	78	10	56	56	4	0	38	1.20
665444--665501	19	2.9	19	85	10	71	34	17	15	32	1.91
665486--665538	13	4.1	13	100	0	106	39	15	15	30	1.87
669369--669497	52	2.5	52	97	0	240	28	18	17	34	1.94
669506--669530	13	1.9	13	100	0	50	36	16	16	32	1.90
669568--669635	32	2.1	32	97	0	127	36	17	11	33	1.86
669592--669616	13	1.9	13	100	0	50	32	16	16	36	1.90
669573--669656	19	4.7	19	80	18	108	36	17	11	33	1.87
671850--672007	58	2.7	58	83	2	176	25	8	23	43	1.81
671881--672031	58	2.6	58	86	0	176	24	8	21	45	1.80
676487--676926	66	6.7	66	81	4	404	18	24	15	41	1.90
676487--676643	34	4.8	32	69	18	126	19	23	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676483--676929	199	2.2	196	81	4	495	18	23	15	41	1.90
676766--676934	32	5.2	32	66	20	98	20	23	15	41	1.90
676485--676986	265	1.9	264	81	4	600	18	23	15	42	1.89
676483--676972	132	3.7	132	76	6	454	18	23	15	42	1.89
680121--680279	29	5.4	29	80	0	156	40	5	22	32	1.77
683290--683410	27	4.5	27	84	4	118	30	14	31	23	1.94
684180--684216	17	2.2	17	95	0	65	32	18	24	24	1.97
684885--684955	8	8.9	8	83	7	74	5	0	9	84	0.77
684885--684957	10	7.9	9	80	11	69	5	0	10	83	0.80
684886--684957	18	3.8	18	81	13	74	5	0	11	83	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16