genome.fa.s215.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Length:  2124891

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  9  of  16  ( 1860 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1362899--1362966	33	2.1	32	89	8	102	35	14	16	33	1.89
1374307--1374345	13	3.0	13	96	0	69	30	17	15	35	1.91
1379059--1379095	13	2.8	13	87	0	56	35	18	10	35	1.86
1379530--1379571	20	2.0	21	90	4	68	19	42	28	9	1.82
1381545--1381569	13	1.9	13	100	0	50	32	16	16	36	1.90
1382321--1388283	62	96.5	62	80	4	5513	23	25	20	30	1.99
1388124--1388436	164	1.9	165	83	0	412	23	25	19	30	1.98
1388289--1389191	62	14.6	62	83	3	1068	23	27	19	29	1.98
1388061--1388503	226	2.0	226	85	4	606	23	26	19	30	1.98
1389153--1389232	41	2.0	41	89	0	124	23	22	23	30	1.99
1389029--1389346	164	1.9	165	85	3	444	23	26	21	28	1.99
1389194--1391206	62	32.6	62	77	4	1726	23	25	20	30	1.98
1388968--1389405	226	1.9	227	87	2	648	24	26	20	28	1.99
1391044--1391370	164	2.0	165	84	1	433	24	27	18	30	1.98
1391209--1392110	62	14.6	62	82	1	997	24	26	19	29	1.98
1390995--1391420	226	1.9	227	85	1	586	24	27	18	29	1.98
1391209--1392110	185	4.9	183	81	2	982	24	26	19	29	1.98
1392073--1392151	41	1.9	41	92	0	131	25	22	24	27	2.00
1391949--1392266	164	1.9	165	89	0	494	25	27	19	27	1.99
1392114--1392500	62	6.3	62	90	0	560	24	28	18	28	1.98
1391888--1392336	226	2.0	227	89	0	684	25	27	19	28	1.99
1392461--1392540	40	2.0	40	92	0	133	20	33	18	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1392399--1392589	102	1.9	102	91	2	312	22	28	19	28	1.98
1392501--1392910	62	6.6	61	80	4	405	22	25	20	32	1.98
1393679--1393730	20	2.7	20	91	8	81	28	15	17	38	1.90
1393772--1393824	20	2.6	21	82	8	65	28	16	16	37	1.91
1393812--1393836	13	1.9	13	100	0	50	36	16	16	32	1.90
1393846--1393884	20	2.0	19	90	5	60	30	7	23	38	1.83
1396110--1396150	22	2.0	21	86	13	59	41	4	21	31	1.74
1396492--1396522	8	3.8	8	95	4	53	61	25	0	12	1.32
1401096--1401435	62	5.5	62	86	2	461	23	29	19	27	1.98
1401396--1401475	40	2.0	40	87	4	117	21	33	17	27	1.96
1401334--1401537	102	2.0	102	89	0	309	24	29	17	28	1.97
1401436--1401622	62	3.0	60	81	6	207	24	26	19	30	1.98
1401623--1401809	62	3.0	62	83	0	232	22	27	17	32	1.97
1401531--1401714	92	2.0	92	81	8	214	21	23	19	35	1.96
1401468--1401761	154	1.9	154	79	5	335	23	25	18	32	1.97
1401304--1401776	164	3.0	154	77	8	334	23	27	18	30	1.97
1401713--1401911	102	2.0	102	91	0	326	22	31	18	27	1.97
1401815--1405535	62	60.0	62	75	7	2364	23	26	19	29	1.98
1401242--1402004	379	2.0	380	93	1	1307	22	27	18	30	1.97
1403810--1403887	41	1.9	41	86	0	111	23	25	24	26	2.00
1403687--1403997	164	1.9	165	87	0	453	24	27	20	28	1.99
1403634--1404059	226	1.9	227	87	0	620	24	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1403951--1404393	226	2.0	225	88	1	663	22	30	19	27	1.98
1404137--1404212	40	1.9	40	94	0	134	17	35	19	27	1.94
1404016--1404334	164	2.0	162	89	4	498	22	30	19	27	1.98
1404075--1404270	102	1.9	102	93	2	340	20	32	19	27	1.97
1405496--1405576	41	2.0	41	87	0	117	23	24	20	30	1.99
1405382--1405699	164	1.9	164	87	1	458	23	27	19	30	1.98
1405435--1405628	103	1.9	102	90	1	307	24	27	19	28	1.99
1405538--1407199	62	26.6	62	75	7	1197	23	26	19	30	1.98
1405317--1405761	226	2.0	226	88	0	667	24	26	19	29	1.99
1405823--1406018	102	1.9	102	94	0	347	21	31	19	27	1.98
1405761--1406241	164	2.9	164	89	1	689	23	27	19	28	1.99
1405987--1406180	102	1.9	102	84	2	264	23	27	22	26	1.99
1407161--1407240	41	2.0	41	89	0	124	23	25	21	30	1.99
1407202--1407465	62	4.3	62	87	0	366	23	28	19	28	1.98
1407099--1407302	103	2.0	103	91	0	327	24	26	20	28	1.99
1407037--1407364	165	2.0	165	87	2	480	22	27	20	29	1.99
1407305--1407617	164	1.9	163	88	0	464	23	28	20	28	1.99
1407466--1407651	62	3.0	62	80	3	214	23	25	19	31	1.98
1407367--1407559	102	1.9	102	89	0	296	24	30	19	25	1.98
1407652--1407844	62	3.1	60	82	3	215	22	29	17	30	1.97
1407500--1407970	164	3.0	154	76	8	348	22	27	18	31	1.97
1407272--1408221	379	2.5	380	82	6	1132	23	27	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1407805--1407884	40	2.0	40	92	0	133	20	35	18	26	1.95
1407743--1407938	102	1.9	102	90	4	315	22	32	18	27	1.97
1407845--1408061	62	3.5	62	85	1	301	24	28	17	29	1.97
1407907--1408203	163	1.8	164	83	5	404	24	26	17	30	1.97
1408070--1408255	62	3.0	62	81	6	200	23	24	20	31	1.98
1407239--1413221	606	9.7	611	70	14	2361	23	27	18	31	1.98
1408256--1408942	62	11.1	62	83	2	810	23	26	18	31	1.98
1408296--1408942	185	3.5	184	89	2	888	23	26	19	30	1.98
1408256--1408942	247	2.8	247	85	2	898	23	26	18	31	1.98
1408903--1408983	40	2.0	40	92	0	135	23	33	16	27	1.95
1408841--1409027	102	1.8	102	89	2	295	24	28	18	28	1.98
1408943--1409076	62	2.2	62	88	0	196	26	26	17	29	1.98
1408779--1409076	164	1.8	164	91	0	488	24	26	19	29	1.98
1409129--1409322	62	3.1	62	82	4	230	22	26	17	34	1.96
1409283--1409362	40	2.0	40	90	0	124	21	31	17	30	1.96
1409008--1409620	164	3.8	164	81	4	635	23	26	18	31	1.97
1409223--1409416	102	1.9	101	91	1	316	23	29	18	28	1.98
1409326--1409486	62	2.6	62	89	0	259	24	27	19	28	1.98
1408782--1410013	544	2.3	544	97	0	2293	23	26	18	31	1.97
1409385--1409571	102	1.8	102	90	0	302	24	28	18	28	1.98
1409447--1409526	40	2.0	40	92	0	133	23	33	16	26	1.95
1409487--1409620	62	2.2	62	90	0	205	26	26	17	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1409644--1409702	31	2.0	30	86	6	84	23	25	13	37	1.92
1409325--1410056	380	1.9	380	85	1	1018	24	26	17	31	1.97
1409673--1409866	62	3.1	62	81	4	230	22	26	17	33	1.96
1409827--1409906	40	2.0	40	90	0	124	21	31	17	30	1.96
1409705--1410018	164	1.9	164	84	2	425	24	26	17	31	1.97
1409767--1409960	102	1.9	101	87	3	282	23	29	17	29	1.97
1409870--1410401	62	8.6	62	83	1	645	24	28	18	28	1.98
1409673--1410091	226	1.9	225	82	2	536	23	26	16	32	1.96
1410362--1410441	40	2.0	40	87	0	115	17	35	20	27	1.95
1410238--1410533	164	1.8	164	87	0	448	22	29	18	29	1.98
1410402--1410803	62	6.5	62	80	3	434	22	26	18	31	1.97
1409994--1431904	411	52.6	406	69	16	4151	23	27	18	29	1.98
1410116--1423875	350	38.5	350	70	16	2743	23	27	18	29	1.98
1409673--1431904	473	46.7	469	67	18	2533	23	27	18	29	1.98
1410713--1410897	102	1.8	102	91	0	307	24	28	17	29	1.98
1410816--1411161	62	5.6	62	83	2	444	23	26	19	29	1.98
1410652--1410964	164	1.9	164	85	1	430	24	25	19	30	1.98
1410824--1411161	123	2.7	123	82	4	419	23	26	20	29	1.99
1411122--1411202	40	2.0	40	92	0	135	23	33	16	27	1.95
1411063--1411246	102	1.8	102	89	2	289	25	27	18	28	1.98
1411162--1411295	62	2.2	62	88	0	196	26	26	17	29	1.98
1411348--1411541	62	3.1	62	82	4	230	22	26	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411502--1411581	40	2.0	40	90	0	124	21	31	17	30	1.96
1411227--1411839	164	3.8	164	81	4	635	23	26	18	31	1.97
1411442--1411635	102	1.9	101	91	1	316	23	29	18	28	1.98
1411545--1411705	62	2.6	62	89	0	259	24	27	19	28	1.98
1411604--1411790	102	1.8	102	90	0	302	24	28	18	28	1.98
1411666--1411745	40	2.0	40	92	0	133	23	33	16	26	1.95
1411706--1411839	62	2.2	62	90	0	205	26	26	17	29	1.98
1411863--1411921	31	2.0	30	86	6	84	23	25	13	37	1.92
1411892--1412085	62	3.1	62	81	4	230	22	26	17	33	1.96
1410998--1412232	544	2.3	544	97	0	2299	23	26	17	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16