genome.fa.s215.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Length:  2124891

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  7  of  16  ( 1860 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970981--971189	92	2.3	91	86	2	285	27	25	15	31	1.96
971925--972123	35	5.7	35	89	3	265	21	23	12	42	1.86
971925--972130	70	2.9	71	89	2	308	22	23	11	42	1.86
972096--972327	95	2.5	95	82	0	277	20	18	18	43	1.88
972096--972327	47	4.9	48	77	2	227	20	18	18	43	1.88
972223--972430	112	1.9	112	87	0	308	19	17	20	43	1.88
972342--972455	48	2.4	47	82	4	131	23	20	18	37	1.94
972651--972931	85	3.3	84	77	3	269	19	24	13	43	1.87
972796--972963	85	2.0	85	80	2	194	20	26	11	41	1.86
973945--974582	166	3.9	164	81	8	611	30	10	7	50	1.66
974889--974946	11	5.5	11	82	17	61	75	0	20	3	0.94
974888--974932	23	1.9	24	95	4	83	75	0	22	2	0.91
974888--974932	12	3.8	11	91	8	63	75	0	22	2	0.91
976400--976919	155	3.4	154	75	6	446	27	17	18	36	1.93
982740--982790	3	17.0	3	100	0	102	66	0	0	33	0.92
984788--984834	21	2.3	20	78	10	51	70	0	17	12	1.17
999040--999371	43	7.8	43	76	6	271	19	29	17	33	1.95
999051--999225	85	2.0	86	82	5	212	18	30	18	33	1.95
999314--999431	62	1.9	62	84	3	157	21	27	19	32	1.97
999375--999537	43	3.8	43	79	5	170	18	29	15	36	1.92
999393--999562	85	2.0	86	81	7	204	17	30	17	35	1.92
1000600--1000897	163	1.8	161	83	9	390	29	14	8	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000645--1001161	167	3.1	163	75	12	367	31	13	8	46	1.72
1002545--1002848	167	1.8	167	87	0	455	33	11	13	40	1.82
1005596--1005671	27	2.8	28	81	2	91	32	28	22	15	1.95
1005652--1005716	28	2.4	28	77	12	73	35	26	15	23	1.94
1005777--1005855	26	3.0	26	80	12	90	30	25	20	24	1.98
1005750--1005855	28	4.0	25	80	11	88	30	26	19	23	1.98
1006013--1006303	28	10.5	28	71	8	159	29	27	18	24	1.98
1006419--1006561	28	5.2	28	75	6	103	34	25	15	25	1.95
1006498--1006573	28	2.7	28	83	0	80	31	26	14	27	1.95
1007077--1007216	52	2.7	51	86	4	174	30	15	12	41	1.84
1010413--1010541	52	2.5	52	98	0	249	28	17	18	34	1.94
1010413--1010561	52	2.9	51	92	4	237	30	17	18	33	1.94
1010550--1010574	13	1.9	13	100	0	50	36	16	16	32	1.90
1010614--1010679	32	2.0	33	94	2	116	36	16	12	34	1.86
1010635--1010659	13	1.9	13	100	0	50	32	16	16	36	1.90
1014309--1014358	23	2.2	23	100	0	100	30	40	8	22	1.82
1018054--1018165	48	2.3	49	80	13	126	52	0	0	46	1.06
1019317--1019366	22	2.3	21	83	12	66	78	0	14	8	0.97
1019700--1019751	16	3.3	16	76	12	54	15	15	0	69	1.20
1021764--1021812	15	3.1	15	85	8	53	40	6	2	51	1.38
1023785--1023832	4	12.0	4	86	8	71	79	0	0	20	0.74
1024350--1024390	2	20.0	2	95	5	73	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028141--1028213	25	2.8	26	77	6	76	36	13	6	42	1.71
1030865--1030897	17	2.0	17	88	5	50	45	0	21	33	1.52
1031172--1031229	28	2.1	28	96	0	107	41	25	17	15	1.89
1036420--1036453	15	2.3	15	100	0	68	35	0	35	29	1.58
1036992--1037025	6	5.7	6	92	0	50	58	0	29	11	1.33
1037353--1037427	23	3.2	23	75	9	64	53	0	1	45	1.08
1037359--1037402	16	2.9	15	80	9	54	54	0	0	45	0.99
1039396--1039441	18	2.5	19	82	7	58	39	8	0	52	1.33
1046632--1046684	13	4.5	13	71	26	55	35	16	13	33	1.88
1046632--1046700	33	2.1	33	89	5	104	36	18	13	31	1.89
1047359--1047415	21	2.9	19	84	10	62	35	24	1	38	1.66
1047343--1047403	21	2.9	21	85	2	77	36	26	1	36	1.66
1047381--1047415	18	1.9	17	88	11	52	28	28	0	42	1.56
1047343--1047450	22	5.1	22	73	15	95	31	27	2	37	1.71
1049315--1049341	13	2.1	13	100	0	54	40	14	14	29	1.86
1054725--1054793	33	2.1	33	86	5	95	34	18	14	31	1.91
1054822--1054889	19	3.9	19	78	21	94	39	16	16	27	1.89
1054842--1054900	13	5.1	13	76	23	69	40	15	15	28	1.87
1054823--1054918	32	3.0	32	93	1	156	39	15	16	28	1.89
1058542--1058675	69	1.9	69	80	8	157	30	12	30	26	1.93
1063431--1063486	3	18.7	3	100	0	112	33	0	0	66	0.92
1064678--1064703	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1064660--1064723	32	2.0	33	90	3	103	42	15	14	28	1.86
1066895--1066944	21	2.3	21	80	10	57	56	4	18	22	1.58
1068742--1068772	15	2.1	15	93	0	53	48	16	22	12	1.80
1070845--1070882	13	2.9	13	96	0	67	34	18	15	31	1.92
1074445--1074500	20	2.8	19	89	5	76	37	16	17	28	1.91
1074570--1074595	13	2.0	13	100	0	52	38	15	15	30	1.88
1074552--1074616	32	2.0	34	90	6	107	44	15	12	27	1.82
1078665--1078695	15	2.1	15	93	0	53	48	16	22	12	1.80
1080776--1080813	13	2.9	13	96	0	67	34	18	15	31	1.92
1083370--1083395	13	2.0	13	100	0	52	38	15	15	30	1.88
1083352--1083416	32	2.0	34	90	6	107	44	15	12	27	1.82
1084317--1084498	50	3.8	50	75	17	197	29	15	10	43	1.82
1084313--1084394	24	3.3	24	69	29	73	29	19	8	42	1.81
1084377--1084447	20	3.5	20	82	0	97	33	11	12	42	1.79
1085357--1085397	21	2.0	22	85	9	59	21	19	9	48	1.77
1089659--1089722	24	2.8	23	79	9	78	25	3	0	71	1.00
1089659--1089724	21	3.0	22	78	14	73	25	3	0	71	1.01
1094637--1094693	28	2.1	27	87	6	80	59	10	1	28	1.40
1096532--1096803	103	2.6	103	81	7	280	44	4	4	47	1.43
1101580--1101643	33	1.9	32	84	12	85	39	0	1	59	1.07
1101607--1101664	17	3.3	18	78	21	61	34	0	0	65	0.93
1101561--1101664	35	2.9	33	75	19	95	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1101607--1101659	23	2.2	25	83	12	67	35	0	0	64	0.94
1101561--1101665	12	9.0	12	72	19	62	35	0	1	62	1.06
1102577--1102606	2	15.0	2	100	0	60	0	50	0	50	1.00
1102944--1102985	17	2.5	17	80	0	57	28	0	0	71	0.86
1103110--1103150	16	2.4	19	76	23	54	36	0	2	60	1.10
1103387--1103411	7	3.6	7	100	0	50	84	0	0	16	0.63
1103614--1103732	60	2.0	60	85	6	161	51	5	1	42	1.34
1106311--1106353	20	2.1	20	82	4	50	9	27	44	18	1.80
1106785--1106822	13	2.9	13	96	0	67	31	15	18	34	1.92
1108904--1108934	15	2.1	15	93	0	53	12	22	16	48	1.80
1110737--1110781	21	2.1	21	84	8	56	22	20	4	53	1.63
1114570--1114600	9	3.4	9	95	0	53	38	0	35	25	1.56
1119123--1119159	13	2.8	13	95	0	65	29	16	16	37	1.90
1119294--1119335	20	2.0	21	86	13	61	35	21	0	42	1.53
1121700--1121724	13	1.9	13	100	0	50	32	16	16	36	1.90
1121680--1121747	33	2.1	33	88	2	102	35	17	14	32	1.91
1123594--1123652	32	1.9	30	83	13	75	59	10	10	20	1.58
1123912--1123975	32	2.0	33	90	3	103	28	10	15	45	1.80
1124505--1124538	9	3.8	9	96	0	59	38	0	35	26	1.57
1124505--1124538	3	11.3	3	87	0	50	38	0	35	26	1.57
1128331--1128397	33	2.0	33	88	0	98	34	11	13	40	1.81
1128351--1128375	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128438--1128462	13	1.9	13	100	0	50	32	16	16	36	1.90
1128471--1128594	52	2.4	52	93	1	205	35	17	18	28	1.94
1132696--1132721	13	2.0	13	100	0	52	30	15	15	38	1.88
1133164--1133206	20	2.1	21	86	4	61	20	46	27	4	1.71
1135266--1135290	13	1.9	13	100	0	50	32	16	16	36	1.90
1135246--1135313	33	2.1	33	88	2	102	35	17	14	32	1.91
1135590--1136980	463	3.0	463	98	0	2647	29	17	17	35	1.93
1138529--1138553	12	2.1	12	100	0	50	48	0	0	52	1.00
1139593--1139700	16	6.8	16	78	9	96	38	28	16	15	1.90
1145415--1145457	12	3.4	12	84	12	59	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16