genome.fa.s215.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Length:  2124891

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  3  of  16  ( 1860 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379578--379628	12	4.3	12	78	11	52	17	0	1	80	0.81
379940--380037	36	3.0	33	82	8	112	30	23	12	33	1.91
380790--381223	217	2.0	217	99	0	850	26	18	20	34	1.96
383829--383854	13	2.0	13	100	0	52	38	15	15	30	1.88
384055--384119	33	2.0	32	88	8	96	36	13	15	33	1.87
384685--384744	3	20.0	3	92	0	102	31	35	0	33	1.58
386392--386442	19	2.6	20	81	6	59	27	13	19	39	1.90
390576--390601	13	2.0	13	100	0	52	30	15	15	38	1.88
390555--390620	33	2.0	34	88	8	100	27	15	16	40	1.88
393188--393226	13	3.0	13	92	0	60	38	15	15	30	1.88
399359--399424	33	2.0	34	88	8	100	28	13	16	40	1.87
400287--400336	21	2.4	22	83	9	61	32	20	0	48	1.50
402395--402419	13	1.9	13	100	0	50	24	16	20	40	1.91
402376--402438	33	1.9	32	90	3	99	26	15	17	39	1.90
402408--402460	19	2.8	20	88	11	76	32	15	16	35	1.90
402492--402542	20	2.5	20	87	6	68	35	13	15	35	1.87
403067--403098	14	2.4	14	94	5	57	31	12	18	37	1.88
411254--411278	13	1.9	13	100	0	50	32	16	16	36	1.90
411328--411381	20	2.7	20	82	5	65	33	11	18	37	1.86
412694--412746	19	2.7	20	88	2	72	30	15	16	37	1.90
412660--412722	33	1.9	33	87	9	94	30	12	15	41	1.85
412776--412829	20	2.7	19	83	11	65	31	16	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414312--414377	20	3.7	20	69	26	74	27	13	15	43	1.84
414312--414390	33	2.4	33	95	0	149	27	13	15	43	1.85
414364--414390	13	2.1	13	100	0	54	29	14	14	40	1.86
419585--419659	20	3.8	19	78	7	87	41	12	13	33	1.81
419582--419659	40	2.0	39	89	2	120	41	12	12	33	1.82
420197--421995	28	62.2	28	82	7	1419	23	17	30	27	1.97
420186--421600	292	4.8	289	85	5	1631	22	18	30	28	1.98
420197--421600	468	3.0	464	87	5	1889	22	18	30	28	1.98
420700--422056	55	23.6	55	83	7	642	23	17	31	27	1.97
423077--423112	9	3.9	9	92	3	54	0	2	8	88	0.59
430468--430542	20	3.8	19	78	7	87	41	12	13	33	1.81
430465--430542	40	2.0	39	89	2	120	41	12	12	33	1.82
431550--431712	80	2.0	80	98	0	317	30	15	14	39	1.87
435137--435209	28	2.6	27	78	4	83	31	17	24	26	1.97
435244--435316	28	2.6	28	86	0	101	27	20	28	23	1.99
435087--435393	108	2.9	106	78	4	339	34	14	24	26	1.94
435272--435694	79	5.3	78	82	3	436	33	13	24	28	1.93
435293--435666	158	2.4	158	85	4	484	35	12	23	29	1.91
437971--438025	20	2.8	19	83	8	74	43	7	14	34	1.73
438772--438862	42	2.2	41	84	7	112	41	14	23	20	1.89
439623--439648	13	2.0	13	100	0	52	30	15	15	38	1.88
439960--440003	21	2.1	21	83	8	54	25	31	4	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441813--441851	13	3.0	13	100	0	78	38	15	15	30	1.88
441838--441915	20	3.7	20	76	15	75	41	15	16	26	1.88
443419--443443	13	1.9	13	100	0	50	24	8	4	64	1.38
443480--443510	15	2.1	15	93	0	53	12	22	16	48	1.80
445314--445358	21	2.1	21	84	8	56	22	20	4	53	1.63
447574--447599	13	2.0	13	100	0	52	30	15	15	38	1.88
448178--449427	123	10.2	121	83	4	1356	30	19	25	25	1.98
448178--449430	61	20.5	61	83	4	1343	30	19	25	25	1.98
453628--453714	39	2.2	39	85	0	120	31	14	16	37	1.89
453755--453810	21	2.8	20	86	5	76	30	14	14	41	1.85
454243--454311	36	1.9	36	91	2	113	33	10	27	28	1.89
455811--455847	13	2.8	13	100	0	74	32	16	16	35	1.91
455994--456050	29	2.0	28	96	3	105	42	8	21	28	1.82
456950--456974	12	2.1	12	100	0	50	60	0	0	40	0.97
457187--457221	17	2.1	17	88	0	52	20	31	8	40	1.82
459018--459420	161	2.5	157	78	8	433	37	10	13	38	1.78
460657--460692	9	3.9	9	92	3	54	80	5	0	13	0.88
460660--460716	22	2.5	22	83	8	62	77	3	5	14	1.08
470734--470791	23	2.5	23	97	0	107	50	1	0	48	1.11
470790--471026	97	2.4	97	85	2	316	30	28	12	28	1.93
474483--474546	12	5.6	11	75	17	60	40	0	45	14	1.44
474483--474551	33	2.1	33	94	0	120	42	0	43	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474485--474542	15	3.7	15	73	13	53	41	0	44	13	1.44
474500--474580	42	1.9	42	89	0	126	44	0	43	12	1.42
476271--476373	51	2.0	51	100	0	206	34	22	13	29	1.92
477809--477908	52	1.9	52	95	0	182	28	19	15	38	1.91
479665--479734	34	2.1	34	94	0	122	44	18	20	17	1.87
487654--487696	16	2.7	16	81	0	59	27	6	6	58	1.50
488057--488107	23	2.2	23	85	3	66	25	5	21	47	1.73
488379--488480	42	2.4	42	80	11	118	53	0	18	26	1.51
488416--488442	14	1.9	14	100	0	54	59	0	7	33	1.25
488848--488905	9	6.4	9	75	13	57	75	0	20	3	0.94
488872--488896	11	2.3	11	100	0	50	84	0	8	8	0.79
489604--489664	28	2.1	30	84	6	81	49	9	11	29	1.71
489969--490123	28	5.6	27	74	17	106	39	11	3	45	1.59
490015--490146	27	4.8	28	76	15	107	35	9	5	49	1.59
490029--490146	54	2.1	56	81	10	136	33	11	5	50	1.60
490166--490207	14	3.1	14	75	6	50	52	4	0	42	1.22
490190--490342	54	2.8	54	83	3	180	41	6	5	46	1.52
490142--490345	28	7.4	27	71	8	137	41	7	4	46	1.54
495906--495955	19	2.9	17	82	8	57	42	0	4	54	1.19
497113--497145	3	11.3	3	93	6	59	66	0	0	33	0.92
499563--499596	14	2.5	13	86	9	50	17	0	8	73	1.08
500316--500367	22	2.4	21	75	15	52	44	0	7	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500380--500434	25	2.2	25	83	6	67	32	3	7	56	1.44
501706--501730	11	2.3	11	100	0	50	36	0	0	64	0.94
502065--502287	50	4.5	50	84	2	261	33	19	16	30	1.94
506663--506773	50	2.2	50	81	0	123	38	9	13	38	1.76
508161--508217	19	3.1	19	76	19	57	54	0	1	43	1.10
508378--508424	25	2.0	24	84	12	62	38	0	2	59	1.09
508634--508674	16	2.8	16	82	14	52	48	0	4	46	1.23
509717--509741	2	12.5	2	100	0	50	48	0	0	52	1.00
509807--509831	2	12.5	2	100	0	50	48	0	0	52	1.00
513135--513177	20	2.2	20	92	8	72	51	0	0	48	1.00
513174--513228	19	3.3	17	82	14	62	60	0	0	40	0.97
513174--513212	19	2.2	19	90	9	64	61	0	0	38	0.96
516351--516379	2	14.5	2	100	0	58	51	0	0	48	1.00
516758--516800	18	2.3	18	92	4	68	32	0	6	60	1.23
519763--519807	22	2.0	22	95	0	81	28	4	28	37	1.77
523242--523268	13	2.1	13	100	0	54	29	14	14	40	1.86
523222--523283	33	1.9	32	93	3	106	25	11	20	41	1.86
523327--523379	20	2.6	21	82	8	65	30	16	15	37	1.90
523367--523391	13	1.9	13	100	0	50	36	16	16	32	1.90
523993--524034	21	2.0	21	100	0	84	42	14	0	42	1.45
525370--525414	20	2.1	22	88	8	67	4	26	48	20	1.68
525380--525421	20	2.0	20	86	4	57	7	28	45	19	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530597--530717	52	2.3	52	97	0	224	28	18	18	34	1.94
530597--530737	52	2.7	51	90	4	212	30	17	18	33	1.94
530726--530750	13	1.9	13	100	0	50	36	16	16	32	1.90
530815--530839	13	1.9	13	100	0	50	32	16	16	36	1.90
530793--530859	33	2.0	33	88	0	98	40	13	11	34	1.81
531728--532049	55	5.8	55	73	13	266	36	14	23	25	1.93
531726--531884	49	3.1	49	77	6	156	35	15	23	25	1.94
531664--532048	171	2.2	173	96	1	711	36	14	23	24	1.93
531964--532334	49	7.7	49	83	8	460	32	17	25	24	1.97
531963--532335	92	3.9	93	91	6	570	31	17	25	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16