genome.fa.s215.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Length:  2124891

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1860 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2012181--2012214	12	2.8	12	90	0	50	41	0	35	23	1.55
2015966--2016483	263	2.0	263	99	0	1027	34	15	20	28	1.93
2016897--2016949	20	2.7	20	87	0	79	22	13	15	49	1.79
2016939--2016975	13	2.8	13	91	0	56	35	16	16	32	1.91
2017095--2017141	21	2.3	20	82	10	60	31	19	4	44	1.70
2017418--2017459	20	2.0	21	86	4	59	19	42	28	9	1.82
2020488--2027246	477	14.2	477	84	2	7962	36	14	18	30	1.91
2028011--2028035	13	1.9	13	100	0	50	36	16	16	32	1.90
2027988--2028055	33	2.1	33	88	2	102	35	14	14	35	1.87
2030408--2030446	20	1.9	19	85	10	51	43	2	20	33	1.65
2030579--2030603	13	1.9	13	100	0	50	32	16	20	32	1.94
2037235--2043422	477	13.0	477	85	2	7528	35	14	18	30	1.91
2043748--2043805	20	3.0	20	84	2	82	39	10	15	34	1.81
2043853--2043951	20	5.7	20	66	30	82	36	12	20	31	1.89
2043873--2043930	13	4.9	13	72	20	56	36	13	18	31	1.90
2043851--2043950	33	3.0	33	98	0	191	38	12	20	30	1.88
2052498--2052522	13	1.9	13	100	0	50	36	16	16	32	1.90
2052507--2052562	19	2.9	19	83	2	76	37	16	14	32	1.88
2052593--2052657	33	2.0	33	84	6	87	36	13	18	30	1.90
2053402--2054963	476	3.3	477	86	2	2185	36	14	18	30	1.91
2058121--2058146	13	2.0	13	100	0	52	38	15	15	30	1.88
2058170--2058252	13	5.5	13	70	27	58	37	16	12	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2058178--2058239	18	3.7	18	71	22	62	38	16	11	33	1.84
2058170--2058254	32	2.7	31	90	3	143	38	16	11	32	1.85
2058889--2059082	52	3.7	52	86	2	217	34	16	25	23	1.95
2058926--2059082	52	3.0	52	89	0	233	34	17	25	22	1.96
2059152--2060253	43	25.0	39	71	17	252	30	18	25	25	1.98
2059278--2060290	49	21.5	48	74	14	812	31	18	24	25	1.97
2059152--2060312	92	12.5	92	78	12	1092	31	18	25	25	1.98
2059800--2060312	43	11.2	43	80	12	549	32	17	24	25	1.97
2058985--2060307	476	2.8	474	91	4	2030	31	17	25	25	1.97
2060077--2060144	21	3.2	21	64	32	54	30	17	26	25	1.97
2060353--2060631	34	8.4	34	74	10	231	34	13	34	18	1.89
2060437--2060495	27	2.1	28	87	3	84	33	15	30	20	1.93
2060335--2060581	129	1.9	129	83	3	318	35	13	33	17	1.89
2060376--2060557	94	1.9	94	83	5	233	35	14	31	19	1.91
2060464--2060630	67	2.5	67	79	6	187	35	13	32	17	1.89
2060599--2060652	27	2.0	27	88	0	81	29	18	29	22	1.97
2060353--2060652	162	1.8	163	86	3	435	33	14	33	19	1.91
2068872--2068925	20	2.7	20	97	0	99	38	20	14	25	1.91
2068924--2068961	20	1.9	20	100	0	76	31	15	13	39	1.86
2068981--2069032	13	3.5	13	73	26	50	36	17	13	32	1.89
2070070--2071235	159	7.3	156	66	12	536	36	15	18	29	1.91
2069309--2071538	477	4.7	476	87	3	3124	36	14	19	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2072294--2072324	13	2.4	13	94	0	53	35	12	16	35	1.87
2072274--2072337	33	1.9	33	84	6	85	35	15	12	35	1.85
2072369--2072424	20	2.8	20	91	0	94	30	21	16	32	1.95
2072970--2073050	22	3.9	22	76	12	89	30	29	3	35	1.75
2080915--2080981	33	2.0	33	85	5	91	37	17	11	32	1.87
2081333--2105349	477	50.7	477	83	3	28975	36	14	18	30	1.91
2081333--2105340	953	25.3	953	85	3	29147	36	14	18	30	1.91
2106475--2106546	28	2.6	28	86	4	92	22	19	36	22	1.95
2106636--2106711	27	2.8	28	89	2	109	21	21	34	23	1.97
2109513--2110284	55	13.9	55	88	5	1092	20	20	30	28	1.98
2111264--2111301	15	2.7	14	92	8	60	0	13	5	81	0.85
2111264--2111299	14	2.7	13	91	4	54	0	13	2	83	0.76
2123850--2123921	28	2.6	28	86	4	92	22	19	36	22	1.95
2123909--2124080	52	3.3	51	84	6	202	30	12	26	29	1.93
2124063--2124138	27	2.8	28	90	6	111	22	21	32	23	1.98
2123796--2124146	107	3.3	105	71	12	302	29	14	28	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!