Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold25
Parameters: 2 7 7 80 10 50 1000
Length:  9553305

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   

This is table  56  of  56  ( 6609 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9531553--9531587
16
2.1
18
89
10
56
40
11
0
48
1.39
9532392--9532417
13
2.0
13
100
0
52
38
15
15
30
1.88
9536484--9536514
15
2.1
15
93
0
53
48
16
22
12
1.80
9538520--9538599
20
3.8
20
75
15
79
26
15
15
43
1.85
9538585--9538623
13
3.0
13
96
0
69
30
17
15
35
1.91
9541164--9541189
13
2.0
13
100
0
52
38
15
15
30
1.88
9550560--9550613
19
2.8
19
91
2
90
35
11
16
37
1.84
9550655--9550679
13
1.9
13
100
0
50
32
16
16
36
1.90
9550688--9550814
52
2.4
52
98
0
245
35
18
18
26
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56

The End!