genome.fa.s7.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold7
Parameters: 2 7 7 80 10 50 1000
Length:  6555642

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  37  of  37  ( 4421 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6414147--6414185	20	2.0	20	85	9	55	46	2	0	51	1.14
6416278--6416345	2	34.0	2	87	11	86	50	1	4	44	1.31
6417052--6417100	16	3.1	16	80	13	57	26	0	2	71	0.97
6417072--6417113	21	2.0	21	85	0	57	30	0	0	69	0.89
6416957--6417346	195	2.0	196	87	5	567	36	1	8	53	1.42
6418012--6418053	19	2.2	20	91	4	68	23	0	9	66	1.21
6418304--6418346	21	2.0	23	86	9	63	18	6	16	58	1.60
6418861--6418899	18	2.1	19	85	4	53	28	2	0	69	1.02
6419503--6419535	15	2.2	15	100	0	66	42	0	0	57	0.98
6419495--6419547	19	2.9	19	80	8	65	41	0	0	58	0.98
6419589--6419662	28	2.6	29	85	6	98	51	0	0	48	1.00
6420128--6420181	27	2.0	27	85	7	74	55	0	0	44	0.99
6420117--6420187	34	2.1	34	81	2	81	59	0	0	40	0.98
6426326--6426425	10	10.2	10	70	19	68	60	0	0	40	0.97
6426296--6426417	38	3.3	37	76	12	126	60	0	0	38	1.02
6426350--6426383	18	1.9	17	88	5	50	50	0	0	50	1.00
6427505--6427556	15	3.4	15	72	2	50	59	1	0	38	1.08
6430297--6430321	9	2.8	9	100	0	50	64	0	0	36	0.94
6430936--6431021	45	1.9	45	85	4	120	50	11	5	32	1.63
6431204--6431240	15	2.4	16	82	8	51	45	0	5	48	1.25
6431862--6431951	31	3.1	27	75	18	74	34	0	0	65	0.93
6431861--6431932	31	2.5	28	78	12	83	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6431907--6431949	19	2.2	20	83	4	52	34	0	0	65	0.93
6431959--6431995	16	2.3	16	90	0	56	18	2	10	67	1.32
6431976--6432026	22	2.4	22	90	3	77	25	0	7	66	1.18
6431994--6432030	16	2.5	15	83	16	51	27	0	5	67	1.12
6432216--6432246	16	2.0	15	93	6	53	22	0	6	70	1.09
6434751--6434775	13	1.9	13	100	0	50	36	16	16	32	1.90
6434847--6434874	13	2.2	13	100	0	56	28	14	17	39	1.89
6438548--6438680	51	2.6	51	96	0	239	42	12	18	27	1.85
6438642--6438700	20	2.9	21	87	7	86	38	13	15	32	1.86
6439701--6439725	13	1.9	13	100	0	50	36	16	16	32	1.90
6439685--6439746	33	1.9	32	90	3	97	38	16	14	30	1.88
6442319--6442369	20	2.5	20	87	6	77	41	17	17	23	1.90
6449862--6449982	52	2.3	52	97	0	224	28	18	18	34	1.94
6449862--6450002	52	2.7	51	90	4	212	30	17	18	33	1.94
6449991--6450015	13	1.9	13	100	0	50	36	16	16	32	1.90
6450056--6450125	33	2.1	33	89	0	104	40	14	11	34	1.82
6450081--6450105	13	1.9	13	100	0	50	32	16	16	36	1.90
6450446--6450471	3	8.7	3	100	0	52	30	34	0	34	1.58
6451192--6451247	20	2.8	20	94	0	94	35	17	7	39	1.78
6451236--6451261	13	2.0	13	100	0	52	30	15	15	38	1.88
6454966--6455083	1	118.0	1	77	0	92	0	7	5	86	0.71
6454968--6455085	29	4.0	29	90	7	193	0	9	5	84	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6454966--6455077	32	3.6	32	90	9	187	0	7	6	86	0.70
6454966--6455085	61	2.0	61	95	3	215	0	9	5	85	0.75
6463864--6463934	27	2.6	27	95	0	124	25	40	19	14	1.89
6464411--6464443	16	2.1	16	88	11	50	54	9	12	24	1.66
6475604--6475657	14	3.9	13	79	18	56	79	18	1	0	0.82
6477093--6477182	28	3.2	28	83	7	112	26	33	13	26	1.93
6477101--6477390	27	10.0	27	77	14	147	22	32	13	31	1.93
6477151--6477408	27	8.5	33	80	13	197	20	32	12	34	1.90
6477132--6477365	61	3.8	60	75	14	210	20	32	13	33	1.91
6477185--6477425	88	2.8	88	87	0	349	20	32	13	33	1.91
6477399--6477494	30	3.3	28	81	7	104	37	31	14	16	1.89
6477511--6478024	49	10.7	49	81	7	454	24	23	18	33	1.96
6477565--6477642	39	2.0	39	89	0	120	28	24	21	25	1.99
6477516--6477777	95	2.9	88	86	6	330	25	24	19	30	1.98
6478658--6478711	19	2.7	21	77	5	67	40	14	12	31	1.84
6478699--6478724	13	2.0	13	100	0	52	38	15	15	30	1.88
6479127--6479161	6	6.0	6	93	6	63	31	0	0	68	0.90
6484893--6484917	12	2.1	12	100	0	50	8	0	0	92	0.40
6486775--6486810	2	18.0	2	100	0	72	50	0	0	50	1.00
6486915--6486962	2	24.0	2	91	0	78	54	0	0	45	0.99
6488859--6488891	17	1.9	17	93	0	57	66	0	0	33	0.92
6494020--6494075	29	1.9	29	92	0	94	37	1	5	55	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6496353--6496398	2	23.0	2	100	0	92	50	0	0	50	1.00
6496614--6496672	2	31.0	2	76	10	61	47	1	1	49	1.21
6497774--6498371	315	1.9	315	83	4	735	31	8	10	49	1.66
6499355--6499477	47	2.6	47	80	5	133	36	12	16	34	1.86
6508560--6508877	32	10.2	32	77	8	223	21	18	31	27	1.97
6508672--6508931	28	8.8	28	76	14	168	22	17	33	26	1.96
6508867--6509189	27	11.9	27	87	0	412	29	14	32	23	1.94
6509798--6509872	20	3.8	20	98	0	141	28	14	12	45	1.80
6509836--6509917	33	2.5	33	88	2	112	31	15	9	42	1.80
6509856--6509886	13	2.4	13	94	0	53	32	16	12	38	1.86
6512225--6512388	51	3.2	50	80	5	177	30	23	11	34	1.90
6512375--6512445	28	2.5	28	93	0	115	22	30	19	26	1.98
6512542--6512658	51	2.3	52	83	7	150	31	24	10	33	1.89
6512324--6512605	110	2.6	107	77	5	325	28	23	14	34	1.94
6512594--6512827	79	2.9	78	82	3	254	27	23	13	35	1.92
6516357--6516396	21	2.0	21	85	5	55	40	10	12	37	1.77
6518956--6519010	19	2.8	19	83	5	65	41	12	14	30	1.83
6518953--6519009	21	2.8	21	78	5	73	40	12	14	33	1.83
6524615--6524698	41	2.0	41	97	0	159	25	21	14	39	1.91
6526150--6527188	522	2.0	522	91	0	1695	31	22	19	26	1.98
6533735--6533791	13	4.6	11	76	20	51	82	12	1	3	0.87
6533737--6533791	25	2.2	25	87	6	76	81	12	1	3	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6535312--6535377	27	2.4	27	84	0	87	21	27	15	36	1.93
6535390--6535568	31	5.7	32	77	6	168	30	28	18	22	1.97
6535634--6536039	52	7.7	51	71	12	234	22	24	16	36	1.94
6544315--6544355	22	1.9	21	85	5	55	29	7	7	56	1.54
6547879--6547932	20	2.7	20	88	0	72	24	18	14	42	1.88
6550192--6550369	51	3.5	51	81	2	198	29	24	10	35	1.89
6550303--6550529	80	2.8	80	78	6	237	29	25	12	32	1.93
6550462--6550584	51	2.4	51	90	0	192	28	27	13	30	1.94
6550516--6550662	79	1.9	79	95	0	267	27	29	14	28	1.96
6550406--6550662	130	2.0	131	87	2	374	28	28	13	30	1.94
6550254--6550764	210	2.4	207	77	4	522	28	25	12	32	1.93
6551839--6552272	158	2.7	158	85	3	550	28	22	13	35	1.92
6551839--6552281	79	5.6	78	81	6	473	27	22	13	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37

The End!