genome.fa.s7.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold7
Parameters: 2 7 7 80 10 50 1000
Length:  6555642

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   

This is table  4  of  37  ( 4421 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446368--446434	33	2.0	33	85	0	89	41	13	11	32	1.81
447312--447687	91	4.1	92	84	10	471	30	18	26	24	1.98
447254--447669	43	8.7	49	85	10	485	31	18	26	23	1.98
447675--447969	32	9.2	32	87	6	354	19	18	33	28	1.96
447675--447969	64	4.6	65	87	5	406	19	18	33	28	1.96
447675--447977	129	2.4	128	87	4	434	20	18	33	27	1.96
447985--448038	27	2.0	27	88	0	81	31	14	31	22	1.94
448038--448507	135	3.5	133	80	10	582	33	12	34	19	1.90
448005--448507	34	15.1	34	78	11	447	33	12	33	19	1.89
448344--448404	27	2.3	27	94	0	104	34	11	32	21	1.89
448005--448503	101	5.0	100	79	11	319	33	12	33	19	1.90
448371--448473	36	2.9	36	89	1	154	33	11	34	19	1.88
448624--448704	42	1.9	42	84	0	108	38	17	25	18	1.92
448634--448809	42	4.2	42	77	7	142	36	15	28	19	1.93
448699--449461	84	9.1	84	75	6	463	38	16	25	19	1.92
448676--448914	42	5.7	41	72	11	130	40	18	24	16	1.91
448780--449480	42	16.7	42	71	2	305	38	16	25	19	1.92
449289--449528	126	1.9	126	83	5	315	37	15	27	18	1.91
448780--449461	168	4.1	168	77	3	595	38	16	25	19	1.92
448780--449474	84	8.3	84	76	3	511	38	16	25	19	1.92
449170--449515	42	8.3	42	73	4	214	36	17	27	18	1.93
451992--452148	79	2.0	79	86	2	217	35	14	22	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452012--452177	79	2.1	78	79	3	188	36	13	22	27	1.91
452348--452548	79	2.6	78	79	5	217	37	15	22	23	1.93
454845--454897	20	2.7	20	90	0	79	39	11	18	30	1.86
455471--455925	41	10.6	41	69	20	146	41	12	26	19	1.86
455595--455911	45	7.0	45	73	15	244	41	11	26	19	1.86
455651--455926	138	2.0	143	83	7	359	40	11	28	19	1.86
455889--455981	37	2.5	38	80	3	116	32	13	33	20	1.92
455970--456425	62	7.4	61	81	5	477	28	18	26	25	1.98
455970--456425	124	3.7	124	87	0	628	28	18	26	25	1.98
456339--456533	100	1.9	101	87	3	286	27	17	30	24	1.97
457502--457591	1	90.0	1	76	0	72	2	2	8	86	0.73
457488--457572	8	10.4	8	80	14	59	2	7	5	84	0.84
457502--457591	19	4.6	19	79	6	92	2	2	8	86	0.73
463676--464342	337	2.0	337	99	0	1325	23	24	17	33	1.96
470324--470491	79	2.1	79	84	4	223	32	16	24	27	1.96
470324--470516	79	2.4	78	78	6	192	33	15	24	27	1.95
470633--470728	50	1.9	50	82	0	120	39	12	22	25	1.89
470670--470888	79	2.8	79	81	6	264	36	17	22	24	1.95
470533--470770	129	1.8	129	80	7	286	35	15	23	26	1.94
470523--470900	208	1.8	208	82	4	485	36	15	23	24	1.94
473237--473264	13	2.2	13	100	0	56	42	14	14	28	1.84
473675--473745	5	14.8	5	77	10	51	4	14	0	81	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473676--473747	30	2.3	32	83	4	94	5	13	0	80	0.88
476771--476840	32	2.2	32	92	0	122	15	20	37	27	1.93
477074--477190	46	2.5	47	87	1	173	19	10	36	33	1.86
476992--477278	137	2.1	137	84	1	369	20	12	36	31	1.89
477101--477284	46	4.1	46	72	16	150	20	12	34	32	1.90
477425--477527	35	2.9	35	82	0	134	20	17	33	29	1.95
478025--478147	31	4.0	31	95	0	219	17	27	19	34	1.95
479543--479579	10	3.5	11	82	10	51	8	16	0	75	1.02
480210--480251	21	2.0	21	86	4	59	66	7	7	19	1.39
480248--480552	153	2.0	154	89	3	472	50	8	10	30	1.66
480402--480818	165	2.5	166	80	8	483	50	6	9	32	1.62
480402--480865	166	2.8	163	76	12	480	49	7	10	32	1.65
481900--482391	85	5.8	85	76	7	270	33	13	32	20	1.91
482106--482331	43	5.3	44	67	9	137	33	14	34	18	1.90
482085--482221	42	3.2	42	74	5	132	35	17	32	14	1.90
481900--482336	85	5.1	84	78	7	325	32	13	33	21	1.91
482110--482370	86	3.0	84	82	6	285	34	14	32	19	1.91
482514--482667	42	3.6	42	81	8	170	38	18	26	16	1.92
484424--484617	95	2.1	92	84	5	248	24	29	13	32	1.93
484424--484597	30	5.7	30	72	15	133	25	30	14	29	1.95
484652--484966	32	9.9	32	78	8	225	29	30	18	21	1.97
484652--484942	96	3.0	97	79	6	274	30	30	17	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484658--484966	64	4.9	62	78	10	293	29	31	18	21	1.97
484959--485913	52	18.0	53	75	6	763	23	24	15	37	1.93
484959--485852	104	8.5	104	83	3	1029	23	23	15	37	1.93
485628--486048	61	7.2	61	77	10	344	23	24	13	38	1.91
485576--485921	113	3.1	112	78	11	368	23	24	13	38	1.91
487587--487701	50	2.3	51	93	1	196	26	15	9	47	1.76
493178--493654	79	6.1	78	84	3	564	35	11	22	29	1.90
493520--493792	129	2.1	130	81	8	333	35	10	22	30	1.89
493666--493855	79	2.4	79	82	6	224	38	9	23	28	1.86
493464--493855	208	1.9	209	83	3	522	37	10	22	29	1.88
494450--495481	517	2.0	519	89	1	1606	36	17	16	29	1.92
496686--496725	21	2.0	20	95	5	71	35	10	12	42	1.76
503999--504024	13	2.0	13	100	0	52	38	15	15	30	1.88
504055--504108	21	2.7	20	83	8	74	29	16	14	38	1.89
504799--506047	49	25.8	49	77	11	1047	32	17	25	24	1.97
504799--506047	101	12.9	98	83	7	1022	32	17	25	24	1.97
504799--506047	150	8.6	149	78	9	1045	32	17	25	24	1.97
505508--505845	87	3.9	87	91	1	509	29	19	24	26	1.98
505638--505786	39	3.6	39	76	15	163	26	20	26	27	1.99
505725--505802	39	2.0	39	85	5	104	25	23	23	28	1.99
506064--506159	30	3.3	29	81	10	117	17	16	32	33	1.93
506132--506417	34	8.8	32	76	13	219	34	13	32	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506134--506382	67	3.8	67	79	8	194	35	13	32	18	1.90
506171--506348	94	1.9	93	86	5	252	34	13	33	18	1.90
506201--506326	61	2.1	60	92	1	207	38	13	30	18	1.89
506367--506515	30	4.9	30	81	6	149	28	17	30	24	1.97
513510--513544	15	2.3	15	90	0	52	45	20	14	20	1.85
513855--513899	20	2.1	22	88	8	67	33	2	8	55	1.43
516528--517914	84	16.5	84	73	7	679	38	17	25	18	1.92
516528--517898	42	32.6	42	71	5	536	38	17	25	18	1.92
530393--530447	20	2.8	20	80	0	65	32	12	14	40	1.84
532656--532895	98	2.4	98	97	0	453	26	28	12	31	1.93
541753--541802	23	2.1	25	85	7	68	32	4	2	62	1.25
541906--541946	14	2.8	15	78	14	50	43	4	0	51	1.23
543663--543694	2	16.0	2	100	0	64	50	0	0	50	1.00
544468--545141	262	2.6	266	79	7	718	40	10	6	43	1.65
549352--549401	20	2.4	21	83	3	66	32	16	10	42	1.81
553394--553601	105	2.0	104	89	2	319	39	11	20	28	1.87
554813--554846	15	2.3	15	90	5	52	20	2	0	76	0.92
556197--556227	4	7.8	4	100	0	62	77	0	0	22	0.77
562851--562927	32	2.4	32	82	6	84	31	22	24	22	1.98
564554--564598	24	1.9	23	86	13	65	15	28	11	44	1.81
572503--572599	20	4.7	20	71	12	70	39	13	15	31	1.86
577265--577299	17	2.1	17	100	0	70	48	5	34	11	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580513--581035	280	1.9	280	100	0	1046	36	15	17	31	1.91
582688--582844	70	2.2	71	86	1	208	37	10	21	31	1.86
582754--582969	97	2.2	97	83	4	267	34	12	24	28	1.92
584554--584641	35	2.5	35	85	3	115	10	17	14	57	1.64
585386--585448	20	3.1	20	77	11	65	17	3	3	76	1.05
585393--585436	10	4.3	10	86	11	54	11	4	2	81	0.92
585401--585453	27	2.1	27	82	10	67	16	3	1	77	1.01
586315--586381	19	3.9	18	74	23	72	34	10	16	38	1.83
586336--586360	13	1.9	13	100	0	50	36	16	16	32	1.90
586317--586379	32	2.0	32	93	0	108	34	11	17	36	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37