genome.fa.s1.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  12  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6364731--6364776	18	2.6	18	96	0	83	43	6	17	32	1.75
6372880--6373022	73	2.0	73	91	0	232	37	10	24	27	1.88
6381489--6381524	2	18.5	2	94	5	65	52	0	0	47	1.00
6390530--6390705	89	2.0	89	96	0	325	35	17	11	35	1.86
6390855--6390893	20	2.0	20	94	0	69	35	41	10	12	1.77
6391169--6391211	20	2.2	20	91	0	68	34	37	13	13	1.85
6391211--6391282	25	3.1	24	76	9	71	37	26	15	20	1.92
6391443--6391671	123	1.9	124	84	0	316	33	23	14	28	1.94
6391580--6391780	102	2.0	102	85	2	269	30	23	16	28	1.96
6393499--6393563	24	3.0	20	74	20	60	49	9	3	38	1.51
6407114--6407157	12	3.7	12	81	6	54	59	4	0	36	1.18
6422599--6422628	2	15.0	2	100	0	60	50	0	0	50	1.00
6432328--6432367	20	2.0	20	90	0	62	45	0	0	55	0.99
6432890--6432943	13	4.1	13	84	11	65	29	0	0	70	0.88
6432893--6432948	28	2.1	27	83	6	69	30	1	0	67	1.01
6433070--6433103	16	2.2	16	89	5	52	38	0	0	61	0.96
6437636--6437704	28	2.5	28	83	2	86	13	13	14	59	1.62
6446433--6446503	31	2.4	29	86	6	90	43	0	1	54	1.08
6446433--6446519	15	6.1	14	72	20	65	43	0	1	55	1.07
6446429--6446476	10	4.8	10	77	7	53	47	0	2	50	1.12
6446430--6446516	29	3.0	30	83	11	85	44	0	1	54	1.07
6450865--6451077	111	1.9	111	96	0	390	26	13	22	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6464917--6464960	21	2.1	21	82	0	52	40	4	0	54	1.21
6477976--6478016	21	2.1	19	86	9	55	24	0	7	68	1.15
6486436--6486468	18	1.9	17	88	11	50	54	9	0	36	1.32
6488156--6488189	15	2.3	15	89	0	50	35	0	0	64	0.94
6488432--6488476	21	2.1	23	88	12	69	28	0	8	62	1.25
6488851--6489561	346	2.1	338	83	3	870	44	6	6	41	1.57
6489347--6489809	247	1.9	246	84	6	623	43	6	6	43	1.55
6505179--6505662	246	2.0	244	90	3	776	37	20	17	24	1.93
6510216--6510245	2	15.0	2	100	0	60	50	0	0	50	1.00
6514867--6514908	22	1.9	23	90	9	70	45	0	0	54	0.99
6514867--6514908	21	2.0	21	85	4	57	45	0	0	54	0.99
6514956--6515033	33	2.4	33	88	0	120	42	1	11	44	1.48
6515089--6515118	15	2.0	15	93	0	51	56	6	0	36	1.26
6516628--6516662	15	2.3	15	90	0	52	0	28	14	57	1.38
6518193--6518288	42	2.3	42	98	0	183	32	29	6	32	1.82
6518375--6518440	35	1.9	34	87	3	96	4	30	34	30	1.78
6525164--6525218	27	2.0	27	92	0	92	23	16	21	38	1.93
6533504--6533529	7	3.7	7	100	0	52	57	11	0	30	1.34
6534864--6534931	34	2.0	34	97	0	127	38	14	10	36	1.81
6542355--6542401	22	2.1	22	100	0	94	44	23	8	23	1.80
6563637--6563665	14	2.0	15	93	6	51	6	34	0	58	1.25
6564406--6564696	144	2.0	144	100	0	582	23	11	23	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6580437--6580548	33	3.4	33	77	2	127	19	16	24	39	1.92
6610478--6610541	22	2.8	23	88	7	94	45	4	1	48	1.32
6610521--6610556	18	2.1	17	89	5	54	55	2	2	38	1.29
6611371--6611523	60	2.5	61	78	2	175	35	17	24	22	1.95
6626412--6626445	2	17.5	2	87	6	52	2	0	47	50	1.16
6627635--6627688	27	2.0	27	92	7	92	48	5	11	35	1.62
6627997--6628061	31	2.1	31	100	0	130	15	21	13	49	1.79
6630764--6630789	4	6.5	4	100	0	52	26	0	23	50	1.50
6636618--6636658	19	2.2	19	91	8	66	73	2	19	4	1.13
6655502--6655541	21	1.9	21	85	10	55	37	0	5	57	1.21
6655630--6655663	11	2.9	11	91	8	50	35	2	5	55	1.39
6666819--6666856	15	2.4	16	82	8	51	50	0	5	44	1.24
6666821--6666871	21	2.5	20	75	6	57	52	1	5	39	1.37
6692287--6692313	6	4.5	6	100	0	54	0	18	0	81	0.69
6699483--6699515	17	1.9	17	88	11	50	12	24	3	60	1.46
6703347--6703403	22	2.6	22	85	0	69	50	7	5	36	1.52
6703710--6703771	11	5.8	10	75	17	54	59	3	0	37	1.13
6708393--6708417	2	12.5	2	100	0	50	52	0	0	48	1.00
6711803--6711857	26	2.1	26	82	0	65	36	16	7	40	1.76
6712045--6712175	53	2.4	53	83	7	149	33	9	9	47	1.69
6714143--6714201	22	2.7	23	74	12	61	37	0	0	62	0.95
6716155--6716257	51	2.0	51	100	0	206	30	19	29	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6717875--6717922	20	2.3	21	82	7	62	45	0	0	54	0.99
6731708--6731739	2	16.0	2	100	0	64	0	50	0	50	1.00
6741060--6741088	2	14.5	2	100	0	58	51	0	0	48	1.00
6748069--6748111	22	2.0	21	90	4	68	30	0	11	58	1.34
6762135--6762159	13	1.9	13	100	0	50	72	0	0	28	0.86
6762274--6762307	17	1.9	18	94	5	61	38	0	5	55	1.24
6777611--6777709	49	2.0	50	88	2	146	24	31	6	38	1.80
6780237--6780284	24	2.0	25	87	4	71	54	0	0	45	0.99
6780756--6780796	20	2.0	22	85	9	59	51	9	2	36	1.48
6830847--6830916	36	1.9	36	97	0	131	37	11	18	32	1.87
6845630--6845654	13	1.9	13	100	0	50	76	0	0	24	0.80
6850597--6850626	2	15.0	2	100	0	60	50	0	0	50	1.00
6857441--6857482	4	10.5	4	85	10	50	80	0	16	2	0.81
6857425--6857482	11	5.3	11	72	19	50	77	0	20	1	0.86
6885545--6885612	30	2.3	29	89	2	100	30	2	7	58	1.40
6889888--6889921	17	2.1	16	94	5	59	23	0	8	67	1.18
6894817--6894878	30	2.1	30	90	0	97	19	17	38	24	1.93
6902850--6903001	72	2.1	72	88	2	225	26	23	19	30	1.98
6909961--6910003	20	2.1	21	86	4	61	2	13	2	81	0.89
6915555--6915677	12	10.2	12	85	3	122	64	0	35	0	0.94
6915558--6915677	48	2.5	48	90	2	188	63	0	36	0	0.95
6915555--6915677	60	2.0	60	90	0	192	64	0	35	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6917268--6917673	212	1.9	210	85	1	560	41	7	3	46	1.51
6943498--6943523	2	13.0	2	100	0	52	50	0	50	0	1.00
6955164--6955239	35	2.2	35	88	4	111	27	14	10	47	1.77
6972990--6973025	18	2.1	17	89	5	54	50	8	5	36	1.56
6974342--6974379	2	19.0	2	100	0	76	50	0	0	50	1.00
6975179--6975218	14	2.9	14	84	0	53	42	5	5	47	1.47
6977702--6977759	25	2.3	25	96	0	107	27	0	1	70	0.97
6977707--6977755	15	3.6	15	69	25	54	30	0	2	67	1.02
6977703--6977770	25	2.9	23	86	6	84	32	1	1	64	1.11
6977733--6977780	22	2.2	22	84	0	60	37	2	0	60	1.09
6978034--6978099	34	1.9	35	84	9	91	53	1	4	40	1.31
6978130--6978169	21	2.0	19	90	9	62	50	2	2	45	1.28
7022369--7022435	32	2.1	32	97	0	125	28	10	14	46	1.78
7022521--7022612	22	4.2	22	75	5	69	25	7	17	50	1.72
7022620--7022685	23	2.9	23	86	6	91	25	10	30	33	1.90
7026274--7026335	29	2.1	29	85	5	81	59	1	3	35	1.23
7042637--7042703	33	2.0	34	85	8	93	53	0	2	43	1.16
7074162--7074393	112	2.1	114	83	8	296	30	6	2	60	1.34
7074580--7074615	18	2.1	18	89	5	56	30	22	2	44	1.67
7079485--7079509	2	12.5	2	100	0	50	52	0	0	48	1.00
7080770--7080806	19	1.9	19	88	0	56	51	10	8	29	1.65
7080707--7080889	99	1.9	96	82	7	226	45	6	9	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7081099--7081249	82	1.8	82	86	0	221	38	3	19	39	1.68
7082322--7082354	16	2.1	16	94	0	57	87	12	0	0	0.53
7086685--7086862	73	2.4	73	81	0	203	39	17	21	20	1.92
7126880--7126956	29	2.6	30	85	4	104	51	0	16	31	1.45
7146006--7146058	27	2.0	27	96	0	97	67	0	1	30	1.01
7146208--7146287	19	3.8	19	79	18	72	47	0	0	52	1.00
7146522--7146663	8	17.8	8	65	15	53	52	4	0	42	1.20
7146577--7146663	25	3.5	24	76	18	90	49	2	0	48	1.13
7157400--7157432	17	2.0	17	88	5	50	33	18	18	30	1.94
7162804--7162844	15	2.6	16	85	14	59	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32