genome.fa.s1.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  30  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14336019--14336049	9	3.6	9	95	4	55	48	0	6	45	1.28
14340508--14340802	149	2.0	149	95	0	527	30	15	23	30	1.95
14349661--14349685	10	2.5	10	100	0	50	68	0	0	32	0.90
14349739--14349772	15	2.5	13	90	9	50	82	0	11	5	0.83
14357538--14357580	19	2.2	20	95	4	79	25	23	20	30	1.99
14360690--14360719	2	15.0	2	100	0	60	50	0	0	50	1.00
14366345--14366496	76	2.0	76	98	0	295	37	18	11	32	1.86
14385160--14385218	17	3.4	18	75	11	61	52	1	42	3	1.28
14387179--14387378	108	1.9	108	89	0	310	34	16	5	44	1.70
14388338--14388375	14	2.6	15	83	8	51	44	28	7	18	1.78
14389908--14390005	48	2.0	48	82	7	119	33	14	12	39	1.83
14390607--14390670	31	2.1	31	84	0	83	25	21	14	39	1.91
14392920--14392953	2	17.0	2	100	0	68	50	0	0	50	1.00
14395805--14397652	462	4.0	462	95	1	3154	34	16	20	26	1.95
14395805--14397652	921	2.0	923	93	1	3152	34	16	20	26	1.95
14403667--14403722	28	2.0	28	92	0	94	44	17	16	21	1.86
14410519--14410594	34	2.4	33	85	14	106	69	1	1	27	1.04
14410539--14410710	82	2.1	83	80	13	196	68	0	2	29	1.07
14410525--14410649	5	25.0	5	67	15	53	68	0	2	28	1.08
14410629--14410710	33	2.6	32	84	5	103	70	0	1	28	0.95
14410525--14410713	14	13.1	14	69	24	78	67	0	2	29	1.06
14413607--14413808	81	2.5	82	89	2	300	38	8	9	44	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14413986--14414047	31	2.0	31	90	0	97	38	19	4	37	1.73
14417286--14417325	22	1.9	21	85	10	55	35	10	12	42	1.76
14418624--14418672	25	2.0	25	88	4	73	40	4	6	48	1.47
14418649--14418727	29	2.7	29	96	2	140	43	6	10	40	1.64
14418977--14419035	26	2.3	27	85	5	77	32	6	11	49	1.66
14419167--14419215	21	2.1	23	82	14	57	57	6	4	32	1.42
14421896--14421920	12	2.1	12	100	0	50	24	20	8	48	1.76
14424214--14424299	41	2.1	40	82	8	102	51	2	4	41	1.35
14429418--14429461	18	2.4	18	85	7	54	13	22	4	59	1.53
14432927--14433034	21	5.2	21	79	2	119	25	8	18	47	1.77
14432927--14433018	41	2.2	41	88	1	130	23	9	18	47	1.78
14433148--14433210	21	3.0	21	86	9	83	26	3	15	53	1.57
14433252--14433324	21	3.5	21	88	0	83	36	4	12	46	1.61
14433267--14433331	21	3.1	21	86	4	87	30	4	13	50	1.62
14433302--14433345	21	2.1	21	82	0	52	38	4	9	47	1.56
14433487--14433531	21	2.1	21	83	0	54	42	17	11	28	1.84
14442592--14442626	14	2.4	15	85	9	54	0	8	5	85	0.73
14447797--14447832	2	18.5	2	94	5	65	47	0	52	0	1.00
14447970--14447994	3	8.3	3	100	0	50	32	0	0	68	0.90
14451675--14451731	27	2.1	27	87	9	80	35	10	10	43	1.74
14452028--14452112	28	2.9	29	87	3	118	38	7	11	42	1.69
14451934--14452233	156	1.9	155	81	6	356	32	11	13	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14452021--14452124	29	3.6	28	81	3	118	38	7	12	41	1.72
14453621--14453654	18	1.9	18	88	5	52	41	11	11	35	1.78
14457994--14458041	23	2.1	23	84	7	62	60	0	22	16	1.36
14458637--14458817	74	2.4	74	84	3	247	20	20	17	41	1.90
14466985--14467051	27	2.4	28	75	9	75	41	11	7	38	1.70
14467042--14467129	28	3.2	28	76	12	83	32	10	13	43	1.78
14467056--14467135	27	2.9	27	83	3	97	36	11	12	40	1.79
14467003--14467149	27	5.3	27	75	7	89	38	12	11	37	1.79
14469199--14469237	8	4.8	8	81	6	51	20	0	0	79	0.73
14469350--14469696	43	8.0	43	74	5	259	38	13	15	31	1.86
14469349--14469508	44	3.6	44	74	11	148	36	13	16	33	1.88
14469350--14469730	129	2.9	129	78	4	374	38	13	15	32	1.87
14481876--14481939	25	2.5	26	80	10	69	51	0	1	46	1.10
14492086--14492147	33	1.9	33	90	3	99	20	14	27	37	1.92
14493569--14493630	33	1.9	32	90	3	97	19	11	30	38	1.87
14495568--14495628	32	1.9	32	100	0	122	24	9	9	55	1.63
14498023--14498272	35	7.2	35	83	3	263	45	13	6	34	1.69
14498024--14498272	71	3.6	70	82	4	299	45	13	6	34	1.69
14498024--14498276	106	2.4	107	83	5	295	45	13	6	34	1.68
14508178--14508217	14	2.7	15	84	7	55	55	0	0	45	0.99
14509967--14510112	77	1.9	77	92	1	249	47	13	6	32	1.68
14510940--14510996	20	2.8	20	100	0	114	40	14	14	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14514068--14514155	33	2.6	33	78	1	95	42	5	12	39	1.66
14528039--14528080	21	2.0	21	86	9	59	57	21	19	2	1.52
14529648--14529686	21	1.9	20	84	5	51	41	12	12	33	1.82
14536530--14536558	9	3.2	9	100	0	58	13	44	0	41	1.44
14556828--14557146	157	2.0	157	98	0	620	37	8	17	36	1.80
14557123--14557193	36	2.0	36	83	5	90	45	14	19	21	1.85
14558825--14559259	230	1.9	230	89	0	674	28	8	15	47	1.75
14573160--14575306	745	2.9	738	84	4	2818	42	14	11	30	1.82
14575248--14575296	23	2.1	23	81	11	55	63	8	12	16	1.51
14583644--14583683	20	2.0	21	85	5	55	70	7	22	0	1.12
14603824--14603873	25	2.0	25	84	7	66	32	28	12	28	1.92
14623213--14623295	35	2.4	35	81	6	114	36	24	12	27	1.91
14637700--14637775	2	38.0	2	91	0	125	46	0	3	50	1.20
14642380--14642418	15	2.6	15	100	0	78	33	5	25	35	1.78
14642635--14642699	15	4.1	15	72	16	51	30	6	3	60	1.37
14642651--14642712	32	1.9	33	93	3	108	32	4	0	62	1.16
14642692--14642759	19	3.5	20	71	15	54	29	2	1	66	1.15
14642783--14642809	14	1.9	14	100	0	54	33	0	0	66	0.92
14662260--14662284	2	12.5	2	100	0	50	52	0	0	48	1.00
14666133--14666190	23	2.4	25	82	5	75	32	15	12	39	1.84
14671786--14671837	25	2.1	24	82	3	59	30	28	15	25	1.96
14677703--14677750	20	2.3	20	85	3	60	45	0	8	45	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14678035--14678091	2	30.5	2	74	13	50	47	3	1	47	1.29
14679577--14679617	21	2.0	21	90	0	64	65	2	0	31	1.05
14687922--14688179	64	4.0	63	80	3	282	34	24	13	27	1.93
14689768--14689820	19	2.7	19	82	2	61	39	11	15	33	1.83
14699511--14699537	2	13.5	2	100	0	54	51	48	0	0	1.00
14700163--14700275	53	2.1	54	95	3	210	29	15	13	41	1.85
14706951--14707038	27	3.3	26	75	12	88	7	48	12	30	1.69
14706951--14707069	54	2.2	53	82	4	139	9	44	16	29	1.79
14706990--14707062	27	2.7	27	80	0	83	9	42	17	30	1.81
14707041--14707110	27	2.6	27	82	8	88	8	32	30	28	1.87
14720096--14720138	17	2.5	17	100	0	86	58	11	6	23	1.57
14723500--14723752	35	7.3	35	77	9	232	39	6	9	44	1.63
14723524--14723751	107	2.2	105	81	7	264	39	7	9	44	1.64
14725515--14725609	36	2.7	36	80	6	106	26	12	25	35	1.92
14730475--14730532	26	2.3	25	80	17	66	58	1	1	37	1.18
14732281--14732308	2	14.0	2	100	0	56	50	0	0	50	1.00
14733568--14733607	21	1.9	21	84	0	53	42	0	5	52	1.23
14740890--14741038	81	1.8	81	88	0	226	33	21	12	32	1.91
14742324--14742396	35	2.1	36	84	2	94	57	6	6	28	1.51
14742897--14742935	19	2.1	19	100	0	78	41	0	0	58	0.98
14742977--14743072	45	2.2	45	81	12	110	55	5	1	38	1.29
14743387--14743419	16	1.9	18	88	11	52	54	0	6	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14744561--14744601	21	2.0	21	85	0	55	41	19	26	12	1.87
14746825--14746867	15	2.9	15	78	0	50	32	18	6	41	1.77
14749757--14749783	2	13.5	2	100	0	54	48	0	0	51	1.00
14752493--14752521	12	2.3	13	94	5	51	75	24	0	0	0.80
14753684--14753731	22	2.2	22	85	3	62	20	4	2	72	1.11
14756939--14756972	17	1.9	18	88	5	52	29	2	0	67	1.05
14758114--14758148	18	1.9	18	88	0	52	11	0	8	80	0.92
14758632--14758674	17	2.5	16	85	11	50	76	0	4	18	0.95
14763159--14763568	204	2.0	204	85	6	553	29	25	14	31	1.94
14772908--14772954	19	2.5	19	77	19	53	76	6	4	12	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32