genome.fa.s1.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  2  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347215--347292	20	4.1	19	79	14	81	28	0	1	70	0.95
347103--347295	24	7.7	24	70	20	110	30	2	1	66	1.09
347222--347291	6	10.8	6	78	17	61	25	0	1	72	0.92
347101--347295	50	3.8	52	72	18	135	30	2	1	66	1.12
347227--347306	38	2.1	38	85	4	106	31	0	1	67	0.99
347286--347332	22	2.0	23	84	15	62	51	0	0	48	1.00
351486--351555	27	2.6	27	80	11	79	51	5	2	40	1.40
351604--351728	66	1.9	67	84	1	171	38	18	8	35	1.80
351670--351763	46	2.1	45	82	6	109	38	18	10	32	1.85
355711--355740	6	5.0	6	95	0	51	36	33	30	0	1.58
370618--370706	45	2.0	45	86	2	124	44	2	0	52	1.13
384595--384649	27	2.0	27	82	6	67	27	0	7	65	1.19
394475--394504	12	2.5	12	94	0	51	36	10	6	46	1.64
395068--395128	32	1.9	32	86	6	88	36	1	1	60	1.16
396716--396767	27	1.9	27	88	7	79	36	1	0	61	1.07
398295--398633	165	2.1	162	93	3	599	28	21	16	33	1.95
410214--410279	29	2.3	28	82	10	71	39	1	0	59	1.07
410465--410512	21	2.3	22	78	10	55	45	4	0	50	1.21
411126--411163	20	1.9	20	88	0	58	31	10	39	18	1.85
414023--414085	33	1.9	33	93	6	110	33	12	7	46	1.71
414552--414585	3	11.3	3	100	0	68	32	0	0	67	0.91
420166--420261	44	2.2	45	90	1	149	25	20	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439277--439303	6	4.5	6	100	0	54	48	18	33	0	1.49
447415--447476	33	1.9	32	93	3	106	51	16	24	8	1.71
452251--452277	6	4.5	6	100	0	54	0	14	14	70	1.17
460896--460921	3	8.7	3	100	0	52	30	0	0	69	0.89
461129--461184	23	2.5	22	78	13	62	57	1	0	41	1.09
475453--475578	51	2.5	51	86	2	173	13	31	38	16	1.88
507181--507229	2	24.5	2	100	0	98	51	0	0	48	1.00
525626--525698	25	2.8	28	76	18	75	69	0	1	28	0.96
525611--525697	26	3.3	26	71	13	79	65	0	1	33	1.00
525626--525735	53	2.1	54	86	8	154	69	0	2	27	1.08
525717--525974	13	17.9	15	63	23	76	63	0	3	32	1.13
525679--525814	72	1.9	73	82	10	172	64	1	3	30	1.19
525713--525797	33	2.6	32	81	10	91	68	0	2	29	1.02
525754--525787	18	1.9	17	88	5	50	67	0	0	32	0.91
525770--525968	60	3.4	59	72	18	193	62	0	3	34	1.15
525829--525902	21	3.5	22	78	14	84	66	0	1	32	1.00
525751--525979	113	2.0	114	91	5	376	63	0	2	33	1.12
526129--526169	15	2.7	15	96	0	73	34	26	7	31	1.84
526129--526182	15	3.6	15	89	0	63	33	24	7	35	1.83
526687--526719	16	2.1	16	88	11	50	51	6	15	27	1.66
533745--533784	2	20.0	2	100	0	80	50	0	0	50	1.00
544219--544257	15	2.6	15	100	0	78	33	5	25	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544398--544588	57	3.3	59	72	16	182	35	4	1	59	1.24
544490--544683	38	5.1	38	65	18	91	32	3	0	63	1.13
544514--544555	7	5.7	7	82	17	50	28	0	0	71	0.86
544407--544638	114	2.0	114	95	0	419	33	3	0	62	1.17
544590--544673	33	2.6	31	83	5	96	30	1	0	67	0.98
544655--544720	35	1.9	32	82	17	80	33	3	0	63	1.10
544708--544784	33	2.4	35	85	12	103	25	1	1	71	1.01
545018--545101	41	2.0	41	88	0	123	36	29	11	21	1.89
556470--556579	30	3.9	30	67	18	81	41	9	5	43	1.59
556689--556825	30	4.9	30	67	20	107	35	10	10	43	1.74
556704--556805	26	3.8	26	72	20	93	33	11	13	41	1.81
556681--556825	56	2.6	56	97	1	274	35	10	11	42	1.76
557078--557131	22	2.7	20	76	21	58	48	0	0	51	1.00
557517--557572	28	2.0	29	86	6	80	32	7	0	60	1.24
560272--560345	38	1.9	39	97	2	141	24	10	18	45	1.81
561900--562052	77	2.0	77	100	0	306	28	15	19	36	1.92
585801--585825	12	2.1	12	100	0	50	60	0	40	0	0.97
590026--590460	33	13.2	33	83	0	447	34	22	20	22	1.97
591231--591262	2	16.0	2	100	0	64	50	0	0	50	1.00
591698--591736	18	2.1	19	85	4	53	58	0	0	41	0.98
592329--592366	16	2.3	17	86	4	51	60	5	23	10	1.50
597949--598016	35	1.9	36	90	3	111	45	5	2	45	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604457--604507	22	2.5	21	75	12	52	29	11	5	52	1.61
615054--615107	24	2.2	24	80	0	63	7	16	24	51	1.69
625648--626893	259	5.0	243	80	8	1141	24	10	18	47	1.79
626042--627142	508	2.2	505	81	8	1232	25	10	16	47	1.78
627064--627094	3	10.0	3	93	6	53	32	0	0	67	0.91
643322--643347	12	2.2	12	100	0	52	42	7	42	7	1.62
650752--650830	40	1.9	40	87	7	113	35	8	25	30	1.86
656757--656805	24	2.0	24	100	0	98	34	20	16	28	1.94
658926--658999	21	3.5	21	81	0	94	20	35	10	33	1.87
659857--659886	7	4.1	7	95	4	51	40	0	16	43	1.48
663428--663455	14	2.0	14	100	0	56	21	0	14	64	1.29
676614--676644	10	3.1	10	90	0	53	38	0	0	61	0.96
677511--677705	108	1.8	108	80	6	234	31	4	13	50	1.62
677663--677881	120	1.8	122	85	4	309	28	7	16	47	1.73
691341--691375	17	2.0	18	88	5	54	0	34	0	65	0.93
693123--693180	30	1.9	30	89	0	89	22	17	1	58	1.47
700369--700412	2	22.0	2	85	0	61	52	0	2	45	1.13
701265--701292	3	9.3	3	100	0	56	64	0	0	35	0.94
706522--706550	2	14.5	2	100	0	58	51	0	0	48	1.00
718378--718437	29	2.1	29	87	0	84	50	11	11	26	1.73
725409--725445	18	2.0	18	89	5	56	48	0	0	51	1.00
740242--740290	16	3.1	16	96	0	89	12	10	18	59	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745114--745138	7	3.6	7	100	0	50	0	68	0	32	0.90
747929--747968	20	2.0	20	85	5	53	0	17	2	80	0.83
751219--751248	15	2.0	15	93	0	51	73	0	3	23	0.98
755827--755864	17	2.2	17	86	9	51	2	23	0	73	0.95
757634--757659	13	2.0	13	100	0	52	61	0	38	0	0.96
758080--758116	3	12.3	3	88	0	56	27	0	35	37	1.57
760973--761009	5	7.4	5	87	0	56	0	40	0	59	0.97
761005--761042	15	2.4	16	95	4	69	5	26	2	65	1.27
761184--761220	6	6.2	6	96	0	65	29	67	2	0	1.04
763806--763838	16	2.1	16	88	11	50	33	0	0	66	0.92
768332--768361	2	15.0	2	100	0	60	50	0	0	50	1.00
773744--773770	5	5.4	5	100	0	54	0	18	0	81	0.69
784444--784468	6	4.2	6	100	0	50	16	0	0	84	0.63
784939--784968	15	2.0	15	93	0	51	43	0	0	56	0.99
789026--789063	2	19.0	2	88	0	58	44	0	55	0	0.99
801719--801756	3	12.7	3	94	0	67	36	0	63	0	0.95
821093--821140	24	2.0	24	83	0	60	31	16	25	27	1.97
825296--825322	6	4.5	6	100	0	54	18	0	48	33	1.49
825674--825712	19	2.1	19	85	9	53	25	0	2	71	0.98
848564--848609	17	2.7	17	86	6	58	43	0	0	56	0.99
848587--848630	10	4.1	10	80	13	52	50	2	0	47	1.13
852526--852633	56	1.9	55	85	5	146	25	11	27	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871358--871408	26	2.0	26	96	0	93	21	47	7	23	1.77
872300--872330	2	15.5	2	93	0	53	54	0	0	45	0.99
872330--872364	2	17.5	2	100	0	70	51	0	48	0	1.00
874407--874432	3	8.7	3	100	0	52	0	0	34	65	0.93
874512--874537	12	2.2	12	100	0	52	50	0	50	0	1.00
884313--884342	8	3.8	8	95	0	51	43	0	56	0	0.99
906589--906663	35	2.1	37	85	5	100	57	10	14	17	1.65
913454--913493	20	2.0	21	85	5	55	30	0	0	70	0.88
914937--915020	41	2.1	39	82	8	98	41	0	1	57	1.06
941322--941508	96	2.0	94	86	2	257	44	9	8	37	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32