genome.fa.s1.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  22  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11304793--11304908	22	5.4	21	73	5	88	25	6	22	45	1.75
11304791--11304893	43	2.4	43	95	0	179	26	4	21	47	1.70
11304874--11304915	22	1.9	22	85	9	59	23	11	19	45	1.83
11304935--11304978	23	1.9	23	85	0	61	36	22	11	29	1.89
11305031--11305070	21	1.9	21	84	0	53	42	22	15	20	1.88
11306172--11306313	65	2.2	64	84	7	175	33	5	3	57	1.39
11309501--11309605	55	1.9	55	82	3	131	38	4	12	44	1.63
11322615--11323351	340	2.2	328	84	6	946	45	6	7	40	1.59
11343379--11343417	20	2.0	20	89	0	60	12	0	79	7	0.93
11348270--11348316	18	2.5	20	86	6	71	53	2	0	44	1.12
11348272--11348316	10	4.7	10	76	20	51	53	2	0	44	1.13
11348408--11348478	23	3.1	22	76	11	72	49	2	1	46	1.25
11348380--11348497	45	2.6	46	84	2	157	49	1	4	44	1.32
11348423--11348498	23	3.3	23	75	15	77	52	0	3	43	1.19
11348748--11348809	32	1.9	32	87	6	90	29	1	1	67	1.09
11351471--11351514	23	1.9	23	85	0	61	15	50	9	25	1.74
11352679--11352717	20	1.9	21	84	5	53	71	0	0	28	0.86
11356789--11356856	34	2.0	34	91	5	111	38	7	11	42	1.69
11361780--11361808	2	14.5	2	100	0	58	48	0	51	0	1.00
11363445--11363593	32	5.3	29	73	15	116	29	13	16	40	1.87
11363491--11363593	26	3.9	25	81	8	109	28	13	16	41	1.86
11363453--11363594	26	5.2	26	71	18	85	29	12	16	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11363586--11363752	45	3.8	44	81	4	185	28	19	18	32	1.96
11363617--11363741	45	2.8	45	88	0	187	28	20	18	32	1.96
11363736--11363791	27	2.1	27	96	0	103	21	14	28	35	1.92
11363743--11363799	27	2.2	25	90	9	89	26	14	24	35	1.93
11364059--11364217	25	6.4	25	72	9	123	23	17	16	41	1.90
11364104--11364217	50	2.3	50	93	0	201	19	18	20	42	1.90
11364346--11364378	10	3.0	11	91	8	50	39	0	0	60	0.97
11364514--11364736	80	2.8	80	84	5	272	41	8	10	39	1.69
11365116--11365241	33	4.0	33	78	9	118	46	8	12	32	1.73
11365929--11366054	36	3.5	35	81	3	144	26	15	15	42	1.86
11369257--11369295	14	2.9	14	88	3	53	61	10	0	28	1.28
11370383--11370440	20	2.8	20	81	2	62	63	10	0	25	1.26
11375180--11375325	77	1.9	77	97	2	276	27	16	19	36	1.93
11375602--11375991	25	15.2	25	76	10	207	24	23	14	38	1.92
11375555--11375732	79	2.3	79	89	3	261	28	19	12	39	1.88
11375823--11375991	50	3.4	50	92	0	257	21	26	14	37	1.92
11375824--11375991	75	2.2	75	88	0	255	21	26	14	37	1.92
11376336--11376519	81	2.3	81	87	2	262	44	5	9	40	1.61
11377765--11377826	25	2.5	25	86	0	97	43	16	14	25	1.86
11383422--11383446	2	12.5	2	100	0	50	52	0	0	48	1.00
11385191--11385231	19	2.3	19	87	8	59	65	0	0	34	0.93
11385208--11385239	13	2.5	13	94	0	55	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11385186--11385271	43	2.0	43	88	8	131	61	0	1	37	1.04
11391959--11392002	20	2.1	21	95	4	81	56	0	25	18	1.41
11405767--11405810	21	2.0	22	86	4	63	29	0	6	63	1.20
11410103--11410149	19	2.5	19	96	3	87	27	6	14	51	1.67
11413251--11413293	18	2.2	20	80	12	54	62	2	2	32	1.20
11413253--11413300	19	2.6	19	86	3	62	58	2	2	37	1.22
11413276--11413318	16	2.6	17	79	17	54	51	0	0	48	1.00
11416606--11416649	21	2.2	20	87	4	61	43	29	6	20	1.78
11423920--11423963	21	2.2	20	88	12	63	22	6	6	63	1.43
11426891--11426940	20	2.5	20	90	0	82	50	18	0	32	1.47
11426894--11426942	24	2.0	24	100	0	98	51	16	0	32	1.45
11426891--11426936	4	11.5	4	95	0	74	50	19	0	30	1.48
11429633--11429682	2	25.0	2	100	0	100	50	0	0	50	1.00
11435287--11435596	102	3.0	102	90	0	469	43	5	7	43	1.54
11435432--11435842	175	2.4	175	74	11	462	43	6	4	44	1.52
11435989--11436044	29	2.1	27	83	12	71	35	8	3	51	1.51
11448513--11448570	14	4.1	14	78	12	64	68	0	0	31	0.89
11448519--11448590	30	2.3	31	83	9	85	68	1	1	29	1.07
11448512--11448702	15	12.9	15	65	18	60	65	1	3	29	1.19
11448621--11448702	33	2.4	33	84	8	94	67	0	4	28	1.11
11453809--11453858	20	2.5	20	78	21	59	56	4	0	40	1.18
11455561--11455593	15	2.2	15	100	0	66	21	12	27	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11459188--11459225	12	3.1	12	96	3	67	50	10	0	39	1.37
11469012--11469072	31	2.0	31	100	0	122	40	16	13	29	1.86
11483179--11483208	2	15.0	2	92	0	51	46	0	3	50	1.18
11483677--11483707	15	2.1	15	93	0	53	35	16	19	29	1.93
11484632--11484765	64	2.1	64	83	8	166	35	5	2	55	1.36
11487245--11487273	3	9.7	3	100	0	58	31	0	0	68	0.89
11487844--11487869	2	13.0	2	100	0	52	50	0	0	50	1.00
11491315--11491353	11	3.5	11	89	3	60	41	5	0	53	1.23
11509737--11509796	31	1.9	31	93	0	102	50	13	6	30	1.67
11510195--11510245	20	2.5	21	75	12	61	50	0	0	49	1.00
11510232--11510345	61	1.9	61	89	7	180	52	2	3	41	1.32
11510740--11510785	19	2.3	20	77	7	58	56	0	0	43	0.99
11524301--11524333	16	2.1	16	94	5	59	12	12	3	72	1.23
11547328--11547508	88	2.1	88	94	2	319	32	11	19	37	1.87
11557810--11557850	21	1.9	22	85	5	57	58	2	2	36	1.24
11558775--11558873	45	2.1	47	87	5	139	48	5	5	41	1.47
11558775--11558905	47	2.8	47	83	5	142	46	7	5	40	1.55
11575766--11575796	3	10.3	3	100	0	62	32	0	0	67	0.91
11577972--11578005	2	17.0	2	87	0	50	50	2	2	44	1.32
11583984--11584223	41	6.0	41	65	14	131	39	2	2	55	1.26
11583994--11584580	154	3.8	155	87	4	744	39	2	3	54	1.33
11584259--11584320	26	2.6	25	78	12	67	46	1	4	46	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11584401--11584461	25	2.4	26	86	8	81	37	1	1	59	1.17
11584084--11585084	154	6.6	153	79	12	899	38	2	4	54	1.34
11584408--11584977	42	13.8	41	64	15	167	38	2	3	55	1.32
11584426--11584722	130	2.3	130	86	4	400	36	2	4	56	1.32
11584854--11584910	27	2.2	26	84	6	71	43	1	3	50	1.29
11584916--11584941	11	2.4	11	100	0	52	46	0	0	53	1.00
11584562--11585084	159	3.3	157	86	2	687	38	2	4	54	1.33
11585169--11585247	21	3.7	20	76	17	79	41	1	0	56	1.07
11593020--11593123	4	26.0	4	69	18	65	47	1	2	48	1.28
11593020--11593117	13	7.5	13	69	19	69	47	1	3	47	1.24
11594020--11594054	16	2.2	16	95	5	63	54	5	2	37	1.39
11597199--11597379	91	2.0	92	90	1	283	27	24	18	29	1.98
11597747--11597793	24	1.9	25	86	4	69	46	0	2	51	1.13
11601976--11602014	20	2.0	20	100	0	78	20	25	12	41	1.88
11615384--11615446	18	3.2	19	76	17	65	55	4	0	39	1.21
11615394--11615510	22	5.4	21	72	17	87	58	1	1	38	1.19
11615606--11615664	27	2.1	28	84	3	75	52	1	1	44	1.21
11615649--11615680	16	2.1	16	94	5	57	65	0	0	34	0.93
11615660--11615710	27	1.9	26	84	11	68	60	1	0	37	1.08
11617431--11617602	75	2.3	78	78	6	192	29	15	9	45	1.78
11620003--11620135	58	2.3	59	88	2	187	27	11	10	51	1.70
11620086--11620175	45	2.0	44	85	6	119	23	18	8	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11620120--11620367	136	1.8	136	83	2	329	31	15	9	43	1.78
11626237--11626325	31	2.9	30	78	8	99	31	10	10	48	1.70
11627011--11627070	25	2.4	23	76	17	57	40	13	20	26	1.89
11627919--11627959	20	2.0	20	85	0	55	34	26	7	31	1.84
11642659--11642685	3	9.0	3	100	0	54	33	0	0	66	0.92
11644896--11644993	51	1.9	51	85	6	135	42	12	19	25	1.86
11646350--11646402	27	2.0	27	85	7	72	30	1	0	67	1.01
11648280--11648319	2	20.0	2	100	0	80	0	50	0	50	1.00
11649780--11649838	9	6.6	9	77	14	59	54	3	32	10	1.51
11649789--11649864	27	2.8	27	75	13	66	55	6	30	7	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32