genome.fa.s1.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  32  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15225976--15226202	71	3.2	71	80	3	249	33	12	19	34	1.90
15228046--15228094	22	2.3	21	92	3	80	16	6	4	73	1.19
15236862--15237091	119	1.9	121	84	7	308	33	9	4	52	1.55
15242302--15242357	21	2.7	21	83	8	78	33	5	10	50	1.60
15242299--15242371	21	3.4	21	77	9	76	32	5	13	47	1.66
15250314--15250380	32	2.1	32	86	5	91	19	25	17	37	1.94
15297941--15298021	31	2.6	32	94	2	137	56	16	8	18	1.64
15300388--15300552	78	2.1	77	83	3	197	40	7	12	39	1.73
15311529--15311743	68	3.2	68	85	1	279	33	17	11	38	1.85
15311471--15311745	136	2.0	136	83	1	345	34	18	10	37	1.84
15314844--15315028	36	5.1	34	80	10	167	28	20	13	38	1.90
15314844--15315028	73	2.6	73	82	6	209	28	20	13	38	1.90
15316718--15316809	36	2.6	36	81	6	107	38	26	11	23	1.90
15323988--15324243	35	7.3	35	86	3	347	34	7	12	45	1.70
15323995--15324243	71	3.6	71	87	2	353	34	7	12	44	1.70
15323988--15324253	106	2.5	106	87	5	362	36	6	12	44	1.69
15324177--15324234	18	3.3	18	64	22	50	31	6	17	44	1.75
15329898--15329937	20	2.0	20	95	0	71	7	30	7	55	1.56
15332666--15332835	84	2.0	84	100	0	340	34	11	18	35	1.88
15351385--15351415	16	1.9	16	93	0	53	54	0	38	6	1.26
15365687--15365721	15	2.2	17	90	10	56	40	11	0	48	1.39
15366095--15366160	29	2.3	29	91	0	105	45	10	10	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15372482--15372622	49	2.9	49	81	3	167	32	13	18	35	1.90
15372506--15372622	50	2.4	48	85	4	162	35	12	17	35	1.88
15377804--15377938	67	2.0	67	80	8	150	28	22	17	31	1.97
15379992--15380051	18	3.2	18	79	9	59	71	6	1	20	1.17
15380240--15380291	20	2.6	20	84	0	59	28	15	19	36	1.92
15382043--15382080	12	3.1	12	82	17	51	0	39	57	2	1.12
15382042--15382098	25	2.2	26	75	12	64	0	42	54	3	1.17
15384758--15384809	20	2.6	20	84	0	59	34	21	15	28	1.94
15387527--15387709	67	2.7	68	75	9	151	32	18	21	27	1.96
15391549--15391651	44	2.4	44	83	1	127	39	7	19	33	1.80
15399350--15399390	6	6.5	6	83	10	55	34	0	14	51	1.43
15399350--15399388	14	2.9	14	88	7	55	33	0	15	51	1.44
15399348--15399390	20	2.2	20	91	0	68	34	0	13	51	1.42
15400161--15400238	27	2.9	27	69	5	68	35	21	11	30	1.89
15407011--15407093	42	2.0	40	90	4	130	10	57	16	14	1.64
15407051--15407107	27	2.1	27	87	3	80	12	59	14	14	1.61
15409580--15409612	13	2.6	13	85	4	50	69	6	18	6	1.30
15410263--15410314	16	3.4	15	76	12	52	76	0	11	11	1.01
15413923--15414140	107	2.0	109	87	4	316	46	17	19	16	1.84
15415992--15416036	24	1.9	23	90	4	72	28	15	13	42	1.85
15418085--15418154	21	3.2	21	71	15	61	57	4	0	38	1.19
15418040--15418115	26	2.9	26	69	9	64	55	2	1	40	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15418081--15418130	21	2.4	22	83	10	68	58	4	0	38	1.17
15418043--15418125	26	3.2	26	66	6	60	56	2	1	39	1.20
15418085--15418169	44	1.9	44	87	0	125	56	3	0	40	1.16
15418533--15418614	40	2.1	37	82	10	94	36	23	9	30	1.87
15421268--15421311	11	3.6	11	78	21	52	65	2	31	0	1.05
15421268--15421321	26	2.1	25	93	3	90	66	1	29	1	1.12
15421260--15421341	21	3.6	22	74	16	69	67	1	28	3	1.15
15424683--15424716	16	2.2	16	94	5	61	20	2	11	64	1.39
15425812--15426027	68	3.2	68	81	0	207	35	8	19	36	1.83
15430283--15430324	21	2.0	21	82	17	52	42	21	11	23	1.86
15434189--15434237	23	2.1	23	85	7	64	44	0	4	51	1.20
15435412--15435472	30	2.0	30	83	0	77	32	13	18	36	1.89
15439534--15439567	16	2.1	17	88	5	52	58	11	0	29	1.33
15441543--15441586	21	2.0	22	91	4	72	31	0	6	61	1.22
15443218--15443258	21	1.9	21	85	5	55	34	24	12	29	1.91
15449145--15449182	20	1.9	20	88	0	58	47	13	5	34	1.65
15452514--15452559	17	2.5	17	86	10	56	69	2	0	28	1.00
15452513--15452566	19	2.8	19	78	13	58	66	3	0	29	1.09
15452530--15452575	24	1.9	24	86	8	67	69	2	0	28	1.00
15469294--15469332	14	2.8	14	92	0	60	46	23	2	28	1.65
15469307--15469355	14	3.5	14	80	0	62	42	22	0	34	1.54
15472484--15472537	19	2.6	22	77	19	62	7	12	0	79	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15472484--15472540	21	2.8	20	77	12	62	7	14	0	78	0.94
15485512--15485572	7	8.7	7	80	7	61	0	29	3	67	1.07
15485499--15485571	21	3.4	21	78	12	60	2	28	4	64	1.26
15489774--15489927	73	2.1	73	82	2	184	39	14	19	25	1.90
15495516--15495543	13	2.2	13	100	0	56	39	7	14	39	1.73
15503486--15503598	36	3.3	33	81	10	138	43	11	7	37	1.70
15508496--15508624	59	2.2	58	81	5	143	41	10	7	39	1.69
15508496--15508614	28	4.1	27	75	17	105	42	10	8	37	1.70
15513779--15513833	25	2.2	25	83	0	65	34	27	9	29	1.87
15516035--15516067	5	6.8	5	96	3	59	63	0	0	36	0.95
15521419--15521451	10	3.4	10	91	4	50	42	0	0	57	0.98
15524701--15524913	37	5.9	37	80	3	209	34	17	13	35	1.88
15524737--15524949	108	2.0	108	88	1	320	35	20	12	31	1.89
15524738--15524958	36	6.1	36	80	3	194	34	20	11	33	1.89
15524701--15524958	72	3.6	72	79	4	241	34	18	12	34	1.87
15526134--15526164	16	1.9	16	93	0	53	51	12	19	16	1.76
15528578--15528617	21	1.9	21	89	0	62	30	15	12	42	1.83
15528651--15528736	41	2.1	41	86	0	118	34	20	11	32	1.89
15528677--15528767	41	2.2	41	82	0	101	36	17	15	30	1.91
15530066--15530138	32	2.3	32	87	0	101	24	21	31	21	1.98
15544930--15544971	19	2.2	19	87	8	59	50	4	23	21	1.68
15551032--15551767	376	2.0	377	88	1	1109	34	11	17	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15552600--15552661	31	2.0	32	90	6	101	43	6	6	43	1.55
15552537--15552700	59	2.8	59	78	3	154	40	8	9	40	1.69
15552853--15552886	17	2.0	17	88	11	52	38	0	14	47	1.45
15554241--15554383	28	4.9	28	79	8	142	39	9	11	38	1.75
15554557--15554589	17	1.9	17	88	11	50	39	3	15	42	1.62
15555698--15555732	17	2.1	17	88	0	52	22	5	22	48	1.72
15558236--15558281	22	2.0	23	87	4	67	13	52	4	30	1.59
15558827--15558859	13	2.5	13	90	9	50	39	0	18	42	1.50
15558679--15558990	85	3.7	85	83	5	350	39	1	15	43	1.56
15563777--15563975	66	3.0	65	88	2	299	33	9	10	47	1.70
15570145--15570285	69	2.0	69	98	0	273	24	23	20	31	1.98
15571706--15571862	75	2.1	74	85	7	210	30	15	5	49	1.66
15575975--15576600	171	3.7	171	82	5	750	39	12	14	34	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32

The End!