genome.fa.s1.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  24  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12055045--12055290	133	1.9	132	80	2	296	39	7	23	28	1.82
12055328--12055487	81	2.0	81	88	2	241	37	10	28	23	1.88
12056957--12057009	21	2.5	20	77	17	54	52	16	1	28	1.54
12061445--12061483	14	2.7	15	88	4	53	46	5	2	46	1.38
12073607--12073640	18	1.9	18	88	5	52	8	5	2	82	0.93
12074817--12074841	10	2.5	10	100	0	50	92	0	8	0	0.40
12083384--12083522	73	1.9	73	80	2	163	38	14	19	28	1.91
12089400--12089426	14	1.9	14	100	0	54	51	3	0	44	1.19
12090109--12090162	14	3.9	14	75	15	51	74	0	1	24	0.92
12090118--12090172	18	3.1	17	80	14	58	72	1	0	25	0.94
12091396--12091467	37	1.9	37	82	0	90	45	18	11	25	1.81
12091786--12091844	26	2.3	25	77	8	66	44	20	11	23	1.85
12094176--12094385	108	1.9	108	91	0	339	42	2	15	39	1.60
12110054--12110275	27	8.1	27	74	6	169	40	14	9	35	1.79
12110054--12110268	82	2.6	82	81	3	236	40	15	8	34	1.78
12110092--12110303	55	3.9	54	79	4	178	39	14	9	36	1.79
12110086--12110314	27	8.4	27	74	5	129	38	14	9	37	1.79
12110086--12110299	82	2.6	82	79	2	225	39	14	9	36	1.79
12110054--12110314	55	4.8	54	78	5	166	39	14	9	36	1.78
12111352--12111409	18	3.2	18	68	18	57	15	22	10	51	1.73
12111341--12111420	36	2.2	36	100	0	160	17	21	11	50	1.77
12112785--12112817	17	1.9	17	100	0	66	18	30	6	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12139893--12139954	32	1.9	33	86	3	90	37	20	17	24	1.94
12141457--12141503	19	2.5	19	79	6	51	34	21	12	31	1.91
12145483--12145520	15	2.5	15	95	0	67	36	5	23	34	1.78
12146988--12147037	16	3.1	16	76	2	55	32	8	0	60	1.26
12146973--12147066	30	3.0	29	71	15	73	28	6	0	64	1.18
12147059--12147182	30	4.2	31	71	24	99	29	2	1	66	1.14
12147105--12147153	24	2.0	24	88	0	71	30	0	0	69	0.89
12147066--12147170	54	1.9	56	86	11	155	30	1	1	65	1.14
12147118--12147167	24	2.1	24	85	7	66	26	2	2	70	1.09
12147040--12147196	14	11.1	14	66	14	65	28	2	1	67	1.11
12151439--12151467	13	2.1	14	93	6	51	48	0	0	51	1.00
12155872--12155942	32	2.2	32	75	7	74	53	0	2	43	1.15
12163238--12163285	15	3.5	15	68	26	52	43	0	10	45	1.38
12163235--12163291	25	2.3	25	100	0	114	43	0	12	43	1.41
12170419--12170482	31	2.1	31	100	0	128	20	9	26	43	1.82
12173840--12173919	15	5.3	15	63	0	52	10	8	38	42	1.69
12173826--12173996	30	5.6	30	86	4	243	10	10	34	44	1.73
12173826--12173992	63	2.7	62	89	2	239	10	10	34	44	1.73
12174181--12174212	6	5.3	6	100	0	64	0	15	53	31	1.43
12174180--12174220	18	2.3	17	84	12	55	0	19	51	29	1.47
12178734--12178799	22	3.0	23	78	13	75	22	10	24	42	1.85
12179712--12180498	202	3.9	203	82	4	867	22	11	25	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12183353--12183396	23	1.9	23	85	0	61	38	27	9	25	1.86
12183352--12183402	23	2.2	23	78	0	57	39	27	9	23	1.86
12183253--12183873	113	5.5	115	77	9	510	35	26	12	25	1.92
12183460--12183512	23	2.3	23	80	0	61	39	24	13	22	1.90
12183262--12183873	230	2.7	226	83	3	723	35	26	12	25	1.92
12183816--12183852	18	2.1	18	89	0	56	37	21	10	29	1.88
12189371--12189396	2	13.0	2	100	0	52	0	50	0	50	1.00
12189396--12189428	2	16.5	2	93	0	57	45	0	0	54	0.99
12195037--12195061	2	12.5	2	100	0	50	52	0	0	48	1.00
12196490--12196531	21	2.0	21	86	9	59	57	9	0	33	1.31
12201899--12201972	20	3.8	19	75	5	76	44	6	0	48	1.29
12201940--12201973	10	3.4	10	84	15	52	50	0	0	50	1.00
12201940--12202188	123	2.0	122	82	5	299	39	12	3	44	1.59
12214184--12214208	12	2.1	12	100	0	50	40	0	0	60	0.97
12214523--12214630	48	2.3	45	80	13	121	51	3	4	39	1.40
12215909--12215941	14	2.3	15	89	5	50	30	3	0	66	1.06
12217838--12218692	62	13.9	62	80	3	729	28	16	17	38	1.91
12217838--12218756	123	7.5	123	79	1	770	28	16	17	37	1.91
12217865--12218755	185	4.8	185	81	3	812	28	16	17	37	1.91
12218134--12218225	31	3.0	31	75	12	98	30	16	17	35	1.92
12218175--12218281	31	3.5	31	67	10	92	30	12	19	37	1.88
12222620--12222752	69	1.9	69	92	3	223	27	21	8	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12223153--12223200	16	2.8	17	84	9	62	8	2	6	83	0.88
12225033--12225086	18	3.2	18	70	24	62	38	18	3	38	1.69
12225020--12225086	33	2.0	33	100	0	134	37	20	2	38	1.68
12225020--12225072	15	3.3	15	72	23	54	35	22	1	39	1.65
12226121--12226175	25	2.2	26	83	9	69	3	43	3	49	1.37
12226152--12226208	20	2.8	20	86	0	87	3	43	5	47	1.43
12227133--12227168	16	2.2	16	90	0	54	58	8	2	30	1.42
12226782--12227292	256	2.0	257	88	1	758	47	4	13	34	1.65
12230581--12230682	51	2.0	51	96	0	186	27	29	14	28	1.95
12231754--12231800	19	2.5	19	75	3	51	46	4	4	44	1.42
12231747--12231795	19	2.7	19	78	9	57	44	6	2	46	1.39
12236853--12236891	15	2.6	16	88	8	55	69	10	17	2	1.28
12254687--12254714	2	14.0	2	100	0	56	50	0	0	50	1.00
12257248--12257519	141	1.9	142	82	2	341	26	12	16	44	1.84
12258328--12258529	101	2.0	101	84	1	262	30	14	11	43	1.81
12274869--12274896	7	4.0	7	100	0	56	14	0	0	85	0.59
12276363--12276387	9	2.8	9	100	0	50	0	40	0	60	0.97
12276692--12276720	13	2.1	14	93	6	51	48	0	0	51	1.00
12276974--12277021	25	1.9	25	83	8	62	47	0	2	50	1.12
12277026--12277065	21	1.9	21	90	10	64	27	0	5	67	1.11
12292241--12292276	2	18.0	2	100	0	72	50	0	0	50	1.00
12306211--12306270	26	2.3	27	83	11	81	35	13	6	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12306211--12306270	25	2.4	25	86	8	77	35	13	6	45	1.70
12306246--12306440	76	2.6	76	81	0	237	34	12	14	38	1.84
12314335--12314359	13	1.9	13	100	0	50	88	0	0	12	0.53
12316529--12316553	3	8.3	3	100	0	50	36	0	0	64	0.94
12316927--12316962	7	5.1	7	96	0	63	30	25	41	2	1.69
12317492--12317519	4	7.0	4	100	0	56	75	0	0	25	0.81
12324853--12324893	2	22.0	2	85	14	61	0	51	0	48	1.00
12324853--12324893	11	3.7	12	84	15	61	0	51	0	48	1.00
12324893--12324919	2	13.5	2	100	0	54	48	51	0	0	1.00
12329329--12329358	3	10.0	3	100	0	60	66	0	0	33	0.92
12331703--12331727	7	3.6	7	100	0	50	24	0	32	44	1.54
12332055--12332123	19	3.4	19	74	16	59	36	1	11	50	1.48
12334329--12334392	30	2.1	30	97	0	119	50	7	17	25	1.72
12335838--12335872	17	2.0	18	88	5	54	25	11	22	40	1.88
12345953--12345988	12	3.0	12	91	0	54	16	16	41	25	1.89
12355935--12355965	2	15.5	2	100	0	62	48	0	0	51	1.00
12365679--12365760	27	3.0	27	92	0	137	21	8	29	40	1.83
12372364--12372412	25	2.0	25	88	8	73	57	2	34	6	1.35
12376043--12376084	21	2.0	21	85	0	57	47	0	28	23	1.52
12376302--12376349	25	2.0	24	83	4	60	35	0	4	60	1.16
12376317--12376355	20	1.9	21	84	5	53	38	2	2	56	1.27
12378853--12378908	28	2.0	28	86	10	78	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12378754--12379012	117	2.2	116	84	10	323	13	15	4	65	1.42
12378965--12379012	8	5.9	8	82	9	53	0	14	2	83	0.74
12379025--12379081	28	2.0	29	89	3	89	15	21	0	63	1.31
12387477--12387528	23	2.3	23	96	0	95	40	7	15	36	1.76
12387509--12388055	223	2.5	217	85	6	720	46	4	6	42	1.50
12387968--12388017	22	2.3	22	83	10	66	52	0	4	44	1.20
12387977--12388029	23	2.4	23	85	14	69	43	0	7	49	1.31
12387971--12388029	23	2.8	22	81	18	65	47	0	6	45	1.29
12393291--12393321	2	15.5	2	93	0	53	45	0	0	54	0.99
12422145--12422182	7	5.3	7	87	12	51	84	0	0	15	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32