genome.fa.s1.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  17  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9012092--9012179	33	2.6	33	81	3	86	65	1	2	30	1.12
9012410--9012451	15	2.8	15	88	0	57	38	21	7	33	1.81
9013145--9013325	91	2.0	91	94	0	317	30	31	13	24	1.93
9014610--9014712	27	3.8	27	75	6	91	41	14	7	35	1.75
9014738--9014856	27	4.4	27	80	6	123	42	10	6	39	1.66
9014752--9014993	28	8.8	27	75	4	169	45	13	4	37	1.63
9014856--9014942	23	3.3	23	67	27	66	45	16	1	36	1.54
9014785--9014965	56	3.2	56	89	0	247	45	15	2	35	1.61
9016921--9016966	24	1.9	24	86	8	67	19	43	17	19	1.88
9025078--9025131	28	2.0	26	89	10	81	55	0	0	44	0.99
9025088--9025131	12	3.0	16	68	25	51	52	0	0	47	1.00
9033699--9033814	29	4.2	29	73	21	106	67	0	2	30	1.04
9033801--9033873	33	2.2	33	82	2	92	64	2	5	27	1.29
9034077--9034110	15	2.2	16	89	5	52	38	14	5	41	1.70
9034352--9034433	27	3.1	27	71	15	73	60	0	6	32	1.21
9034330--9034439	34	3.3	34	71	15	95	62	0	6	30	1.20
9034325--9034457	67	2.0	67	80	11	148	63	0	5	31	1.17
9034426--9034464	14	2.8	14	77	14	53	74	0	0	25	0.82
9034888--9034921	16	2.1	17	88	5	52	38	0	0	61	0.96
9034954--9035001	25	1.9	25	87	8	71	45	0	0	54	0.99
9034937--9035000	33	1.9	33	81	6	76	40	1	0	57	1.08
9036007--9036034	3	9.3	3	100	0	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9041539--9041578	20	2.0	20	95	0	71	30	2	30	37	1.71
9055661--9055721	29	2.2	27	82	11	70	77	6	11	4	1.12
9055670--9055726	29	2.0	28	86	13	80	73	3	15	7	1.18
9056168--9056643	140	3.4	139	86	3	659	31	11	7	49	1.67
9057455--9057480	2	13.0	2	100	0	52	50	0	0	50	1.00
9058729--9058761	2	16.5	2	93	0	57	51	0	48	0	1.00
9097861--9097911	27	1.9	27	84	11	70	35	0	1	62	1.06
9097861--9097945	42	2.0	41	82	8	100	40	0	2	57	1.11
9097803--9098190	158	2.5	157	83	5	487	41	2	1	53	1.26
9098057--9098133	27	2.8	26	84	11	86	38	2	0	58	1.12
9097808--9098174	157	2.3	156	81	4	452	41	2	1	53	1.26
9098122--9098211	42	2.1	41	82	8	101	43	2	1	53	1.20
9098477--9098526	26	1.9	26	88	8	75	46	6	0	48	1.27
9098515--9098545	16	1.9	16	93	0	53	48	3	0	48	1.17
9098558--9098599	20	2.0	22	86	13	61	42	0	2	54	1.13
9102862--9102960	49	2.0	49	100	0	198	35	24	12	28	1.91
9107107--9107144	2	19.0	2	100	0	76	0	50	0	50	1.00
9118888--9118922	2	17.5	2	93	0	61	45	0	2	51	1.16
9119467--9119505	16	2.4	16	95	0	69	33	10	38	17	1.84
9129227--9129430	105	2.0	103	85	1	273	22	15	14	48	1.80
9129248--9129466	105	2.1	103	80	1	231	24	15	14	45	1.83
9130351--9130442	44	2.1	44	89	0	139	32	17	14	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9130552--9130589	17	2.3	17	77	4	51	26	21	7	44	1.79
9130981--9131020	2	20.0	2	100	0	80	50	0	0	50	1.00
9131110--9131139	2	15.0	2	100	0	60	50	0	0	50	1.00
9131557--9131670	49	2.3	49	95	3	203	4	57	21	15	1.55
9133307--9133337	16	1.9	16	100	0	62	51	9	12	25	1.70
9135052--9135093	18	2.3	19	88	12	61	9	7	0	83	0.81
9153219--9153269	25	2.0	26	85	11	70	45	1	0	52	1.12
9165284--9165334	22	2.3	22	80	6	68	35	0	0	64	0.94
9165775--9165800	12	2.2	12	100	0	52	42	7	15	34	1.75
9166237--9166274	17	2.2	17	95	0	67	23	13	0	63	1.30
9168384--9168442	31	1.9	31	93	3	102	35	1	3	59	1.24
9168668--9168722	21	2.6	22	80	5	60	52	0	1	45	1.11
9170999--9171037	18	2.2	18	86	4	53	69	0	2	28	1.02
9171042--9171093	27	1.9	27	88	0	77	46	3	3	46	1.39
9171089--9171129	16	2.4	19	76	23	54	65	4	7	21	1.37
9171886--9171934	2	24.5	2	91	0	80	46	4	0	48	1.20
9172530--9172615	32	2.7	32	89	5	111	50	4	3	41	1.40
9187571--9187616	22	2.2	20	84	11	56	17	23	0	58	1.38
9187600--9187646	23	2.0	23	87	0	67	25	6	4	63	1.36
9188749--9188803	27	1.9	28	85	10	76	25	21	1	50	1.58
9196421--9196457	15	2.5	15	86	0	56	43	5	2	48	1.40
9197402--9197437	18	2.0	18	88	0	54	61	2	0	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9197395--9197493	51	1.9	52	91	2	164	51	4	3	41	1.36
9197818--9197920	30	3.5	30	80	5	102	33	2	6	57	1.40
9209486--9209533	13	3.6	14	77	8	55	43	0	0	56	0.99
9209657--9209740	25	3.3	25	81	5	87	66	0	0	33	0.92
9209673--9209707	18	1.9	18	88	11	54	68	0	0	31	0.90
9209696--9209751	17	3.2	19	73	17	57	67	0	0	32	0.91
9209676--9209842	34	5.0	32	70	18	85	68	0	2	28	1.07
9209687--9209842	27	5.7	27	74	9	129	69	0	2	27	1.06
9209784--9209842	13	4.5	13	74	4	55	72	0	0	27	0.84
9209769--9209869	33	3.0	34	73	12	84	65	0	1	31	1.10
9218653--9218951	68	4.4	68	82	2	314	35	18	8	38	1.80
9220180--9220221	16	2.5	17	80	7	50	69	11	2	16	1.29
9225391--9225485	47	2.0	47	95	0	172	44	6	8	41	1.60
9234208--9234236	2	14.5	2	100	0	58	48	0	0	51	1.00
9235839--9236032	103	1.9	103	86	3	275	32	14	9	42	1.78
9235916--9236291	191	2.0	189	86	2	520	30	14	13	41	1.84
9237127--9237160	16	2.1	16	94	0	59	32	35	5	26	1.81
9237162--9237225	32	2.0	32	87	0	92	35	20	10	32	1.87
9243559--9243587	2	14.5	2	100	0	58	51	0	0	48	1.00
9251637--9251683	22	2.2	22	84	3	60	38	12	2	46	1.54
9251830--9251859	15	1.9	16	93	6	53	63	6	0	30	1.20
9276465--9276513	22	2.2	22	77	0	53	46	4	2	46	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9307199--9307242	22	2.0	22	95	0	79	38	4	25	31	1.76
9314764--9314856	44	2.1	44	93	0	159	41	23	6	27	1.79
9318971--9318997	14	1.9	14	100	0	54	70	0	7	22	1.12
9323095--9323142	10	4.6	10	78	17	53	8	0	41	50	1.33
9323978--9324006	2	14.5	2	100	0	58	51	0	0	48	1.00
9343351--9343388	2	19.0	2	100	0	76	50	0	0	50	1.00
9350916--9350953	20	1.9	20	84	10	51	65	10	5	18	1.41
9368479--9368515	14	2.7	14	91	4	58	40	0	0	59	0.97
9375575--9375614	21	2.0	20	85	5	53	27	0	10	62	1.27
9381379--9381422	20	2.2	20	88	11	65	40	0	25	34	1.56
9381359--9381553	97	2.0	96	89	6	297	50	4	19	25	1.66
9381659--9381699	20	2.2	19	91	8	66	43	0	24	31	1.54
9381712--9381756	22	2.0	23	86	4	65	75	0	22	2	0.91
9381757--9381813	19	3.0	19	87	10	73	52	0	19	28	1.46
9381873--9381924	20	2.7	20	88	8	72	51	1	21	25	1.57
9382127--9382167	20	2.2	19	86	8	57	43	2	21	31	1.66
9383032--9383070	19	2.1	18	85	9	51	38	0	0	61	0.96
9390956--9390999	22	2.0	22	100	0	88	31	13	0	54	1.39
9391338--9391446	28	3.8	28	77	9	103	36	11	8	44	1.70
9393822--9393899	39	2.0	39	92	0	129	34	12	19	33	1.90
9395602--9395640	16	2.5	17	84	16	57	53	5	0	41	1.23
9396655--9396680	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9399912--9399956	22	2.0	22	86	8	63	44	2	20	33	1.63
9400169--9400226	27	2.2	27	84	9	75	50	6	10	32	1.63
9400331--9400386	25	2.2	26	83	3	69	42	8	12	35	1.74
9410381--9410417	18	2.1	18	100	0	74	5	10	32	51	1.60
9421726--9421763	16	2.4	16	86	8	51	60	7	13	18	1.56
9427318--9427383	24	2.8	24	70	9	62	46	0	4	48	1.22
9429109--9429148	22	1.9	22	85	10	57	45	0	0	55	0.99
9429281--9429348	33	2.1	32	83	5	84	55	0	0	44	0.99
9441281--9441326	17	2.8	17	86	3	67	26	4	19	50	1.66
9486007--9486053	18	2.4	20	82	13	62	0	44	55	0	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32