genome.fa.s1.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  29  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13915865--13915900	18	1.9	19	88	5	56	38	16	8	36	1.79
13918252--13918299	17	2.7	19	84	12	66	68	0	2	29	1.01
13918254--13918326	25	2.9	24	75	20	60	68	0	1	30	0.98
13918251--13918329	37	2.1	38	83	4	99	69	0	1	29	0.96
13918286--13918345	27	2.2	27	80	13	54	68	0	1	30	0.99
13918324--13918389	13	4.6	15	71	19	52	60	0	4	34	1.17
13918551--13918591	15	2.7	15	88	0	55	36	24	7	31	1.83
13918563--13918604	15	2.8	15	85	0	57	35	26	4	33	1.77
13919056--13919110	25	2.2	24	79	20	60	18	1	3	76	1.02
13947208--13947268	30	2.0	30	81	12	72	36	8	3	52	1.48
13956879--13957445	153	3.7	152	84	3	661	37	18	13	30	1.90
13957412--13957592	95	1.9	97	87	2	267	33	17	10	38	1.84
13960467--13960510	20	2.2	20	87	0	61	45	2	0	52	1.13
13961989--13962033	18	2.3	21	81	14	60	46	0	0	53	1.00
13962930--13962960	2	15.5	2	100	0	62	51	48	0	0	1.00
13986956--13987010	28	2.0	28	92	0	92	29	5	12	52	1.61
14000516--14000569	28	1.9	28	81	7	65	29	25	11	33	1.91
14001069--14001120	21	2.4	21	87	3	77	36	13	15	34	1.87
14001274--14001350	21	3.8	20	83	8	75	50	15	3	29	1.62
14001297--14001357	21	3.0	21	85	2	79	47	18	4	29	1.69
14004392--14004428	18	2.1	18	89	0	56	43	0	37	18	1.51
14015016--14015056	20	2.0	22	85	9	59	39	21	4	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14029374--14029571	40	4.8	40	75	14	181	42	2	1	54	1.21
14029517--14029571	16	4.1	13	70	25	51	41	1	0	56	1.10
14029369--14029635	120	2.2	122	90	2	412	41	2	2	53	1.27
14029604--14029714	27	4.2	26	75	18	95	41	0	7	50	1.36
14029622--14029726	52	2.0	52	92	0	174	42	0	6	49	1.35
14029369--14029669	120	2.5	119	83	8	308	42	2	2	52	1.28
14029814--14029864	26	2.0	26	88	0	75	37	0	0	62	0.95
14029820--14029923	42	2.5	41	84	6	138	38	1	1	57	1.21
14044902--14044947	16	2.6	18	76	16	51	58	0	0	41	0.98
14044918--14044979	20	3.0	21	74	11	56	64	0	0	35	0.94
14048036--14048061	12	2.2	12	100	0	52	57	7	0	34	1.27
14048056--14048081	2	13.0	2	100	0	52	50	0	0	50	1.00
14048831--14048869	20	2.0	20	85	5	53	51	7	0	41	1.31
14050439--14050497	30	2.0	29	83	6	73	64	10	0	25	1.25
14052683--14053051	184	2.0	183	88	1	542	29	12	18	38	1.88
14053055--14053183	68	1.9	68	81	0	159	40	11	15	32	1.83
14061509--14061550	17	2.6	16	82	10	50	26	2	9	61	1.39
14065835--14065864	15	1.9	16	93	6	53	16	6	6	70	1.31
14068302--14068333	14	2.3	14	94	0	55	34	0	9	56	1.32
14070514--14070581	20	3.5	20	69	18	70	35	10	13	41	1.78
14070500--14070581	39	2.1	39	100	0	164	36	9	12	41	1.76
14070722--14070880	36	4.4	36	82	0	183	33	8	15	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14070713--14070937	72	3.2	72	89	3	314	35	7	13	44	1.71
14070751--14070937	36	5.2	36	78	5	137	35	6	13	44	1.69
14070867--14070914	21	2.3	19	77	19	51	45	2	2	50	1.25
14072267--14072316	21	2.4	21	82	0	64	52	28	8	12	1.66
14088838--14088874	2	19.0	2	88	5	58	48	2	0	48	1.15
14092661--14092728	21	3.2	21	69	8	66	50	4	1	44	1.31
14092847--14092876	15	2.0	15	93	0	51	50	0	0	50	1.00
14099278--14099318	21	2.0	21	85	0	55	48	2	2	46	1.28
14099324--14099377	28	2.0	27	85	10	74	50	0	0	50	1.00
14111417--14111458	16	2.7	16	81	3	50	54	2	0	42	1.13
14116938--14116986	22	2.2	22	96	0	89	26	20	22	30	1.98
14117375--14117454	31	2.7	29	79	7	88	32	2	22	42	1.67
14117934--14118625	379	1.8	379	86	0	1017	27	13	21	37	1.91
14123235--14123408	74	2.4	74	83	3	199	24	16	16	43	1.87
14132158--14132321	74	2.2	74	81	4	188	23	18	16	42	1.89
14142435--14142590	73	2.1	73	83	2	197	37	14	22	25	1.92
14144383--14144422	20	2.1	19	90	4	62	80	2	0	17	0.83
14145074--14145416	171	2.0	171	96	0	632	29	17	18	34	1.94
14146385--14146440	25	2.3	23	74	17	58	33	25	7	33	1.83
14150344--14150368	13	1.9	13	100	0	50	44	0	16	40	1.47
14167784--14167851	21	3.2	21	82	2	82	26	17	16	39	1.90
14168169--14168209	20	2.0	20	100	0	82	43	14	9	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14169293--14169339	19	2.3	21	82	14	62	63	6	0	29	1.19
14171035--14171308	142	1.9	140	81	2	325	37	8	13	40	1.73
14171013--14171296	35	8.1	35	82	4	243	36	7	13	42	1.72
14188743--14188780	13	2.7	15	84	12	53	42	2	2	52	1.29
14189331--14189358	7	4.0	7	100	0	56	14	0	0	85	0.59
14203898--14203942	21	2.1	21	83	0	54	44	15	11	28	1.81
14206478--14206511	12	2.8	12	100	0	68	0	41	17	41	1.50
14207160--14207202	21	2.0	21	90	0	68	60	9	0	30	1.28
14211968--14212008	3	13.7	3	100	0	82	34	0	31	34	1.58
14212056--14212173	58	2.0	58	96	0	218	22	8	22	46	1.78
14215093--14215118	11	2.4	11	100	0	52	38	7	26	26	1.83
14215501--14215679	69	2.6	69	78	5	186	36	8	18	35	1.82
14216151--14216206	19	2.8	20	78	8	60	35	5	16	42	1.70
14219800--14219962	29	5.6	28	80	8	166	39	12	8	39	1.73
14219797--14219966	87	1.9	89	83	7	222	38	12	8	40	1.74
14223709--14223738	15	1.9	16	93	6	53	53	0	0	46	1.00
14227914--14227971	27	2.2	27	87	3	91	41	1	5	51	1.34
14228196--14228274	42	1.9	42	87	7	117	46	2	0	50	1.14
14228154--14228519	142	2.6	142	84	3	504	42	3	3	51	1.34
14228230--14228326	26	3.7	26	75	16	92	44	1	1	53	1.14
14231287--14231411	30	4.3	29	74	17	116	32	10	6	51	1.61
14232102--14232140	16	2.4	16	100	0	78	33	5	23	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14235685--14235740	24	2.3	25	82	14	73	35	16	12	35	1.86
14235801--14235848	21	2.3	21	92	0	78	41	25	10	22	1.85
14235752--14235881	66	2.0	65	81	4	154	36	20	12	30	1.89
14244284--14244360	20	3.8	20	100	0	154	31	10	23	35	1.88
14248173--14248227	20	2.8	20	94	0	92	21	16	27	34	1.95
14251481--14251551	35	2.0	35	83	5	90	42	0	0	57	0.98
14261663--14261839	62	2.9	63	81	5	191	35	10	16	37	1.84
14261670--14261866	62	3.2	61	77	5	182	35	12	16	36	1.86
14262380--14262448	23	3.0	25	78	18	71	46	2	1	49	1.25
14262972--14263071	49	2.0	49	92	0	164	27	25	13	35	1.92
14263149--14263184	18	2.0	18	100	0	72	22	33	11	33	1.89
14263454--14263682	78	2.9	79	86	3	318	42	9	10	38	1.70
14265458--14265597	66	2.2	65	85	5	194	18	15	13	52	1.75
14272756--14272874	49	2.4	50	87	4	152	26	23	12	37	1.90
14272778--14272877	49	2.0	49	92	0	164	27	22	13	38	1.90
14272884--14272928	23	2.0	23	90	0	72	22	26	17	33	1.96
14273263--14273514	80	3.2	79	84	6	303	42	7	10	39	1.68
14273382--14273501	38	3.0	40	63	16	95	43	8	11	36	1.71
14285794--14285899	56	1.9	56	90	0	167	34	12	8	44	1.72
14309582--14309608	5	5.4	5	100	0	54	22	0	55	22	1.44
14310348--14310395	11	4.2	11	76	7	51	56	0	2	41	1.11
14310354--14310396	22	2.0	21	86	4	59	53	0	2	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14310468--14310503	8	4.8	8	86	13	58	47	0	0	52	1.00
14310457--14310554	22	4.2	22	71	16	72	48	1	2	47	1.19
14313389--14313546	27	5.8	27	76	5	138	37	8	12	41	1.73
14313389--14313515	55	2.3	53	80	5	137	37	8	12	41	1.74
14313429--14313548	55	2.2	54	84	3	150	39	10	10	40	1.74
14319163--14319219	28	2.0	28	93	0	96	29	17	5	47	1.70
14323254--14323429	79	2.2	80	82	5	214	23	17	21	37	1.94
14328274--14328317	21	2.0	22	91	4	72	31	0	6	61	1.22
14334908--14335070	77	2.1	77	87	5	233	39	6	14	39	1.72
14336016--14336049	2	16.0	2	88	11	50	47	0	5	47	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32