genome.fa.s1.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  26  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12849690--12849824	66	2.0	66	100	0	270	31	17	13	37	1.89
12852787--12852836	23	2.1	24	81	7	66	26	6	30	38	1.80
12854224--12854266	22	1.9	23	86	13	63	65	11	23	0	1.25
12866855--12867720	231	3.7	230	74	11	577	46	4	8	40	1.54
12867671--12867718	16	2.8	17	75	9	53	54	0	2	43	1.12
12866855--12867744	345	2.6	346	86	3	1236	46	4	8	41	1.53
12867698--12867751	20	2.7	20	72	11	56	51	0	1	46	1.11
12866855--12867744	116	7.7	116	72	11	630	46	4	8	41	1.53
12872009--12872037	14	2.1	14	93	6	51	51	13	0	34	1.42
12889577--12889618	21	1.9	21	90	9	66	45	0	0	54	0.99
12890380--12890404	6	4.2	6	100	0	50	64	0	0	36	0.94
12906793--12906835	18	2.4	18	100	0	86	32	16	32	18	1.93
12912869--12912906	13	2.8	13	85	14	51	68	0	0	31	0.90
12917267--12917301	17	2.1	17	100	0	70	34	17	0	48	1.47
12928025--12928536	203	2.5	202	86	2	710	41	24	12	21	1.88
12929493--12929577	28	3.0	28	94	0	143	28	7	34	30	1.84
12929559--12929761	63	3.2	62	84	4	255	31	9	16	42	1.81
12929837--12929870	15	2.3	15	94	0	59	41	17	8	32	1.80
12930415--12930504	21	4.6	19	76	15	76	37	2	0	60	1.09
12930421--12930504	38	2.1	38	86	6	114	40	1	0	58	1.06
12937533--12937613	35	2.3	35	78	4	83	32	11	22	34	1.89
12939150--12939355	108	1.9	109	90	1	333	21	15	25	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12945889--12945916	3	9.3	3	100	0	56	32	0	0	67	0.91
12946690--12946723	11	3.0	11	86	4	50	79	0	14	5	0.91
12949979--12950003	4	6.2	4	100	0	50	24	0	24	52	1.48
12957913--12957966	27	2.0	26	92	3	90	44	22	7	25	1.79
12958263--12958327	2	32.5	2	96	0	121	49	49	0	1	1.10
12958327--12958353	2	13.5	2	100	0	54	51	0	0	48	1.00
12963025--12963088	32	2.0	32	100	0	128	31	21	15	31	1.95
12967358--12967407	16	3.4	16	68	21	54	58	18	4	20	1.55
12979122--12979188	2	34.0	2	93	3	118	0	47	0	52	1.00
12979188--12979217	2	15.0	2	100	0	60	50	0	0	50	1.00
12984691--12984814	60	2.1	60	98	0	239	45	17	16	19	1.85
12996874--12996963	31	2.9	31	81	5	92	60	5	5	28	1.42
12996874--12996940	32	2.1	32	86	2	91	64	4	2	28	1.28
12997199--12997236	9	4.4	9	87	12	53	50	0	2	47	1.15
12997257--12997290	16	2.1	16	88	0	50	52	5	2	38	1.41
13001140--13001326	70	2.6	71	81	9	220	53	4	9	32	1.54
13001297--13001383	28	3.2	26	64	12	66	54	4	5	35	1.45
13001674--13001723	14	3.6	14	72	20	50	60	2	2	36	1.20
13002024--13002093	22	3.0	22	74	15	68	51	1	0	47	1.09
13009804--13009840	18	2.0	19	94	5	67	24	16	0	59	1.37
13014074--13014127	28	1.9	28	92	0	90	22	1	11	64	1.35
13015472--13015582	57	1.9	58	80	8	129	54	10	2	32	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13015821--13015858	18	2.1	18	90	9	60	73	0	0	26	0.83
13015829--13015871	17	2.4	19	80	11	54	72	0	0	27	0.85
13023931--13024099	35	4.8	35	80	4	169	43	8	6	41	1.60
13029063--13029093	14	2.2	14	94	0	53	64	0	3	32	1.09
13035418--13035467	24	2.1	24	100	0	100	44	4	12	40	1.60
13041508--13041546	19	2.1	19	90	0	60	41	25	10	23	1.86
13045983--13046020	15	2.4	16	86	4	51	65	2	7	23	1.32
13047459--13047528	21	3.4	20	68	26	56	31	15	15	37	1.89
13047461--13047538	41	1.9	41	84	10	106	30	12	17	38	1.88
13053812--13053853	17	2.6	17	88	7	61	7	26	0	66	1.17
13054081--13054119	17	2.4	16	86	4	60	12	0	2	84	0.72
13054059--13054126	24	2.7	24	77	9	64	17	7	1	73	1.13
13055319--13055400	36	2.3	36	79	10	96	24	8	26	40	1.84
13061569--13061604	18	2.0	18	88	0	54	66	0	33	0	0.92
13061569--13061609	16	2.5	16	85	14	57	68	0	31	0	0.90
13067220--13067810	323	1.8	321	89	2	934	36	26	14	22	1.92
13076227--13076560	165	2.0	165	87	2	483	31	17	28	22	1.97
13084059--13084096	18	2.1	18	100	0	76	7	31	5	55	1.51
13092334--13092390	25	2.3	25	87	6	80	24	0	3	71	1.01
13092963--13093000	19	2.0	20	89	5	60	23	2	5	68	1.23
13093259--13093291	17	1.9	17	93	0	57	21	0	6	72	1.05
13100084--13100130	21	2.2	22	80	7	60	34	25	0	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13100900--13100935	17	2.1	17	100	0	72	33	30	5	30	1.81
13103853--13103886	2	17.0	2	87	0	50	44	0	0	55	0.99
13105121--13105146	2	13.0	2	100	0	52	50	0	0	50	1.00
13108553--13108617	12	5.4	12	71	14	62	44	10	7	36	1.68
13108551--13108617	11	5.7	11	71	13	53	44	10	8	35	1.70
13108549--13108617	24	2.9	24	100	0	138	43	10	8	37	1.69
13108549--13108608	13	4.9	13	70	13	56	40	11	8	40	1.72
13108672--13108731	20	3.0	20	70	4	59	35	3	0	61	1.12
13109393--13109439	20	2.2	23	82	17	66	74	0	0	25	0.82
13110459--13110888	47	9.0	48	77	8	297	38	16	14	29	1.89
13110460--13110886	94	4.5	95	76	9	332	38	16	14	29	1.89
13119006--13119147	73	1.9	73	91	0	230	34	22	15	27	1.94
13119183--13119269	23	3.7	23	78	3	102	35	16	16	32	1.91
13124146--13124171	13	2.0	13	100	0	52	15	15	15	53	1.73
13124771--13125405	76	8.5	76	72	6	436	25	17	18	38	1.92
13124819--13125085	144	1.9	144	81	0	327	26	18	17	37	1.93
13124963--13125400	228	1.9	228	80	2	504	25	16	18	39	1.91
13129954--13130102	46	3.3	43	73	11	109	24	26	9	39	1.85
13129983--13130605	23	27.0	23	71	6	319	24	32	10	33	1.89
13130140--13130678	46	11.7	46	71	7	275	24	33	9	32	1.87
13130440--13130657	93	2.3	93	78	1	213	25	33	8	33	1.86
13130382--13130665	93	3.1	93	76	4	200	24	33	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13133202--13133226	6	4.2	6	100	0	50	36	0	0	64	0.94
13135851--13135997	75	2.0	72	88	4	213	46	6	5	40	1.53
13136014--13136164	77	2.0	77	84	2	196	51	9	7	31	1.62
13136645--13136674	15	2.0	15	93	0	51	50	0	0	50	1.00
13141072--13141176	25	4.2	25	77	8	99	37	13	14	35	1.85
13141204--13141361	73	2.2	73	89	0	253	26	16	22	34	1.95
13143770--13143812	2	21.5	2	85	0	59	0	6	46	46	1.30
13144288--13144328	21	2.0	21	85	0	55	36	2	12	48	1.54
13144693--13144743	2	25.5	2	95	0	93	49	1	0	49	1.12
13150869--13150931	31	2.0	31	87	0	90	30	7	4	57	1.48
13153058--13153092	17	2.0	18	88	5	54	40	2	2	54	1.30
13155228--13155258	2	15.5	2	93	0	53	3	48	0	48	1.17
13162128--13162177	21	2.4	21	80	6	57	30	26	4	40	1.74
13163267--13163426	82	2.0	82	89	0	248	32	19	17	30	1.95
13167832--13167861	2	15.0	2	100	0	60	50	0	0	50	1.00
13176830--13176896	9	7.2	9	75	6	53	25	35	4	34	1.76
13176855--13176978	63	2.0	63	81	0	149	25	29	9	34	1.88
13177230--13177339	23	4.9	23	73	12	77	31	10	20	36	1.88
13181336--13181404	31	2.2	31	87	5	95	23	13	34	28	1.92
13181443--13181511	31	2.2	31	86	0	93	24	10	34	30	1.89
13183853--13184181	151	2.2	152	84	4	416	31	14	20	33	1.93
13183893--13184251	151	2.4	151	78	5	334	34	14	18	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13187406--13187493	23	3.8	23	70	5	79	22	31	15	29	1.95
13187599--13187677	23	3.4	23	78	0	68	26	27	13	31	1.94
13187691--13187772	23	3.6	23	72	21	73	23	26	6	43	1.77
13187689--13187789	46	2.2	46	80	7	116	22	26	8	41	1.83
13187807--13187882	23	3.3	23	77	14	68	30	35	5	28	1.79
13190230--13190319	44	2.0	44	100	0	180	28	13	13	44	1.81
13190365--13190402	17	2.2	17	86	9	51	78	0	15	5	0.91
13195543--13195689	36	4.1	37	74	6	133	33	18	21	27	1.96
13196946--13197017	21	3.4	21	76	0	90	30	5	12	51	1.62
13202558--13202858	154	1.9	155	84	3	401	22	20	12	43	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32