genome.fa.s1.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  31  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14775331--14775372	21	2.0	21	90	0	66	23	19	21	35	1.96
14776983--14777009	13	2.1	13	100	0	54	62	7	7	22	1.46
14783851--14783885	8	4.2	8	92	3	52	0	34	2	62	1.10
14785584--14785863	141	2.0	142	92	0	463	35	8	15	41	1.77
14791207--14791242	18	2.0	18	88	0	54	72	0	0	27	0.85
14795484--14795517	17	2.0	17	94	0	59	26	14	17	41	1.88
14796695--14796790	45	2.1	44	79	9	104	27	3	16	53	1.58
14799569--14799628	12	4.8	12	84	8	66	48	31	1	18	1.58
14799598--14799628	4	7.8	4	100	0	62	51	25	0	22	1.48
14811609--14811660	27	1.9	28	84	7	72	17	0	13	69	1.19
14836287--14836339	21	2.5	21	96	0	97	33	22	3	39	1.72
14837755--14837810	21	2.7	21	94	5	96	41	17	12	28	1.86
14842342--14842389	21	2.3	21	85	0	60	47	12	16	22	1.80
14843345--14843413	35	2.0	35	91	0	111	34	30	8	26	1.86
14845968--14846084	28	4.1	28	90	3	164	29	13	24	31	1.94
14845949--14846075	56	2.2	56	84	4	157	27	14	25	31	1.95
14852331--14852358	10	2.8	10	100	0	56	39	0	10	50	1.37
14862773--14862798	2	13.0	2	100	0	52	50	0	0	50	1.00
14878442--14878543	41	2.4	43	90	8	163	30	30	6	32	1.84
14878638--14878762	39	3.2	39	97	0	232	8	30	37	24	1.84
14881328--14881429	43	2.4	43	91	6	172	29	29	6	34	1.83
14881357--14881424	15	4.7	15	70	12	54	30	35	5	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14881524--14881646	38	3.2	39	91	5	198	8	30	37	24	1.84
14883402--14883447	20	2.3	20	85	7	58	69	2	8	19	1.25
14883935--14883959	6	4.2	6	100	0	50	16	0	0	84	0.63
14903708--14903741	17	2.0	17	88	0	50	38	14	26	20	1.91
14906439--14906602	39	4.3	38	76	9	147	37	27	11	23	1.90
14906444--14906638	76	2.6	76	84	0	219	36	27	11	24	1.90
14912016--14912059	19	2.3	19	100	0	88	36	9	18	36	1.82
14912019--14912074	16	3.3	16	85	12	60	33	10	19	35	1.87
14929026--14929070	23	2.0	23	86	8	65	24	2	17	55	1.53
14942928--14942972	19	2.3	19	85	11	56	68	2	8	20	1.27
14951151--14953758	512	5.2	492	74	11	1532	32	11	8	48	1.69
14951151--14953810	250	10.7	250	74	9	1804	32	11	8	48	1.69
14952062--14952522	240	1.9	240	82	6	569	31	10	7	49	1.65
14954345--14955730	251	5.6	250	77	6	1185	31	11	8	48	1.69
14954761--14954802	22	1.9	22	85	0	57	38	0	2	59	1.10
14954345--14955726	495	2.8	485	76	8	1217	31	11	8	48	1.69
14965034--14965071	18	2.1	18	95	0	67	36	15	18	28	1.92
14965144--14966007	248	3.5	243	78	8	823	30	11	8	49	1.68
14965544--14965992	238	1.9	235	84	5	600	32	11	6	50	1.63
14967423--14967490	35	1.9	35	84	0	91	32	10	20	36	1.86
14970012--14970063	25	2.1	25	92	0	86	38	11	5	44	1.65
14972835--14972867	16	1.9	18	88	11	52	12	21	0	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14975547--14975749	101	2.0	101	94	0	352	44	12	23	19	1.84
14978675--14978716	21	2.0	21	85	4	57	47	2	0	50	1.14
14982996--14985549	252	10.2	250	76	7	2010	48	8	11	31	1.68
14983591--14985554	251	7.8	252	76	6	1597	48	7	11	32	1.68
14982845--14985549	502	5.4	495	77	8	2048	48	7	11	31	1.68
14987004--14988392	252	5.6	249	76	7	1238	47	7	12	32	1.69
14987090--14988392	498	2.6	501	80	6	1454	47	7	12	32	1.69
14988524--14989167	249	2.6	249	75	9	549	48	8	11	31	1.69
14989119--14989165	22	2.1	22	88	0	67	59	2	6	31	1.34
14994089--14994123	16	2.2	16	100	0	70	37	11	20	31	1.88
14995013--14995042	14	2.1	14	100	0	60	30	23	0	46	1.52
15003562--15003599	20	2.0	20	94	5	69	5	15	5	73	1.19
15006214--15006253	21	1.9	21	85	10	55	37	17	10	35	1.83
15009177--15009230	27	2.0	27	100	0	108	37	14	22	25	1.93
15014029--15014093	29	2.2	29	81	8	69	33	9	9	47	1.67
15015411--15015449	20	2.0	20	100	0	78	41	10	17	30	1.83
15021490--15021627	73	1.9	73	83	0	177	42	13	16	26	1.86
15024518--15024565	13	3.7	12	76	17	51	25	0	2	72	0.95
15024524--15024564	15	2.6	17	77	18	52	24	0	2	73	0.96
15024618--15024648	2	15.5	2	100	0	62	48	0	0	51	1.00
15024746--15024770	2	12.5	2	100	0	50	48	0	0	52	1.00
15024933--15024962	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15024793--15025090	157	1.9	156	92	3	501	45	19	1	34	1.59
15025085--15025151	30	2.2	33	84	15	90	56	17	5	19	1.61
15025784--15025841	27	2.2	26	81	6	64	8	12	15	63	1.50
15026042--15026071	15	2.0	15	93	0	51	6	10	0	83	0.81
15027144--15027182	18	2.2	19	86	9	55	61	2	20	15	1.45
15028273--15028367	29	3.2	29	80	4	102	31	29	11	27	1.92
15028824--15028868	23	1.9	24	86	4	65	26	17	22	33	1.96
15030616--15030660	22	2.0	22	82	4	54	51	8	20	20	1.73
15041662--15041686	11	2.3	11	100	0	50	64	8	16	12	1.49
15065161--15065206	22	2.1	22	91	0	74	28	28	10	32	1.91
15065317--15065480	47	3.5	47	94	1	267	46	12	4	36	1.63
15066478--15066556	21	3.8	21	73	6	79	50	5	0	44	1.24
15066500--15066556	27	2.1	27	83	6	71	49	5	0	45	1.24
15066981--15067019	15	2.6	15	91	0	60	35	20	15	28	1.93
15067932--15067956	10	2.5	10	100	0	50	0	48	0	52	1.00
15070925--15071119	29	6.7	29	80	9	218	36	12	9	41	1.76
15070925--15071119	86	2.2	86	81	11	236	36	12	9	41	1.76
15077394--15077554	58	2.8	57	79	6	144	38	10	11	39	1.76
15077477--15077554	29	2.7	28	86	5	111	41	8	11	38	1.73
15078482--15078706	35	6.4	36	80	3	251	44	14	6	34	1.71
15078482--15078706	71	3.2	71	83	1	283	44	14	6	34	1.71
15078482--15078706	106	2.1	106	84	1	281	44	14	6	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15086815--15086867	16	3.2	16	86	2	61	66	7	7	18	1.41
15090389--15090571	68	2.7	68	83	3	228	34	20	10	33	1.88
15094882--15094993	59	1.9	59	90	0	179	33	7	17	41	1.77
15101301--15101364	24	2.6	25	78	11	71	65	0	34	0	0.93
15101314--15101361	20	2.5	20	75	3	53	70	0	29	0	0.87
15113195--15113244	19	2.7	19	75	3	57	20	4	2	74	1.08
15135433--15135597	76	2.1	77	86	2	233	40	11	7	41	1.69
15141679--15141716	17	2.2	18	86	9	53	0	34	0	65	0.93
15141663--15141741	23	3.4	23	75	16	74	2	30	0	67	1.04
15141669--15141752	8	10.9	8	71	11	50	1	28	2	67	1.10
15145349--15145385	18	2.1	18	100	0	74	35	27	5	32	1.79
15154508--15154564	28	2.0	28	83	6	71	49	15	10	24	1.76
15155767--15156050	144	2.0	144	85	5	387	36	14	15	33	1.88
15158906--15158953	17	2.9	17	78	3	53	62	16	4	16	1.48
15166046--15166082	14	2.6	14	100	0	74	10	5	16	67	1.38
15168030--15168088	25	2.4	25	91	0	91	25	33	13	27	1.93
15182172--15182209	20	1.9	20	84	10	51	34	15	15	34	1.90
15183179--15183234	17	3.3	17	76	0	58	60	10	3	25	1.45
15186673--15186711	13	2.9	14	85	11	55	69	2	5	23	1.21
15187918--15188005	45	2.0	45	95	0	158	30	28	22	18	1.97
15195635--15195669	19	1.9	18	88	11	54	68	5	5	20	1.31
15196046--15196080	2	17.5	2	87	0	52	45	0	2	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15196682--15196846	51	3.3	50	84	8	210	16	18	5	58	1.57
15198161--15198210	23	2.1	25	88	7	77	58	4	4	34	1.36
15199806--15199839	3	11.3	3	100	0	68	32	0	0	67	0.91
15201172--15201218	6	7.8	6	79	9	51	29	4	2	63	1.25
15201172--15201218	13	3.9	12	72	10	51	29	4	2	63	1.25
15202299--15202332	2	17.0	2	100	0	68	50	0	50	0	1.00
15223686--15224135	23	19.6	23	67	5	120	21	28	16	34	1.94
15223847--15224022	69	2.6	69	76	3	192	20	28	14	36	1.92
15224004--15224141	46	3.0	46	78	0	159	23	31	14	30	1.94
15224267--15224414	23	6.4	23	68	6	77	20	31	15	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32