genome.fa.s1.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  18  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9486472--9486533	24	2.5	26	82	10	67	0	48	51	0	1.00
9486498--9486546	19	2.6	18	84	12	55	0	42	57	0	0.99
9486499--9486567	23	2.9	23	82	10	77	0	39	60	0	0.97
9486787--9486845	30	2.0	30	83	12	77	3	45	47	3	1.36
9486941--9486991	28	1.9	27	84	11	70	0	49	49	1	1.12
9486997--9487068	28	2.6	28	69	18	69	5	37	54	2	1.39
9488450--9488501	16	3.2	16	83	0	59	61	7	0	30	1.24
9490207--9491063	216	4.1	212	83	7	1021	29	15	23	31	1.95
9490453--9491041	198	2.9	201	85	6	731	28	16	23	32	1.96
9490238--9491041	414	1.9	414	87	2	1166	28	16	23	31	1.96
9490659--9491124	216	2.2	216	82	4	557	29	15	22	32	1.95
9542168--9542219	22	2.3	23	83	3	61	48	21	9	21	1.78
9542367--9542400	9	3.7	9	84	7	50	50	11	8	29	1.69
9564287--9564352	23	2.9	23	80	10	82	39	22	10	27	1.87
9564358--9564455	21	4.5	22	71	10	67	43	16	14	25	1.85
9564564--9564678	60	1.9	61	83	5	153	45	14	6	33	1.72
9577818--9577871	23	2.3	24	71	9	58	64	0	1	33	1.04
9582554--9582613	32	1.9	30	83	6	75	53	0	0	46	1.00
9584274--9584371	30	3.3	29	80	8	117	56	4	2	37	1.30
9584314--9584361	21	2.3	22	75	10	55	68	2	0	29	1.01
9584293--9584373	29	2.8	29	82	1	99	60	3	1	34	1.22
9592527--9592588	31	2.0	31	96	0	115	19	9	24	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9592527--9592599	31	2.4	31	90	4	103	19	9	26	45	1.80
9598416--9598443	14	2.0	14	100	0	56	21	7	35	35	1.81
9617011--9617044	13	2.6	14	90	9	54	35	0	23	41	1.55
9624993--9625028	15	2.5	15	90	4	56	52	0	0	47	1.00
9630483--9630512	12	2.6	11	90	10	51	90	0	0	10	0.47
9634819--9634849	2	15.0	2	93	6	53	48	3	0	48	1.17
9638478--9638605	36	3.6	35	76	15	100	25	21	16	35	1.94
9639728--9639764	20	1.9	18	89	10	56	70	0	21	8	1.13
9639727--9639771	18	2.5	18	83	16	58	73	0	17	8	1.08
9639732--9639781	20	2.5	19	81	12	57	74	0	16	10	1.08
9647266--9647309	16	2.8	16	80	10	54	13	6	0	79	0.92
9647071--9647302	110	2.1	111	76	9	244	28	7	2	62	1.34
9656402--9656487	33	2.6	33	75	0	100	45	9	8	37	1.66
9660815--9660935	59	2.0	60	82	7	149	41	17	8	33	1.79
9662456--9662510	23	2.4	23	100	0	110	38	10	7	43	1.68
9674698--9674737	21	1.9	21	84	0	53	35	0	5	60	1.19
9682157--9682199	6	7.2	6	100	0	86	0	16	67	16	1.24
9682157--9682205	18	2.7	18	93	0	71	2	14	65	18	1.37
9684956--9684993	11	3.5	11	78	7	51	57	0	0	42	0.98
9689242--9689309	26	2.6	26	85	0	91	11	11	32	44	1.77
9693955--9693994	21	2.0	20	85	14	55	30	12	12	45	1.79
9696278--9696330	8	6.5	8	76	4	52	50	9	1	37	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9696280--9696327	25	2.0	24	87	4	69	50	10	2	37	1.49
9705056--9705479	207	2.0	211	85	4	581	24	13	19	42	1.88
9713292--9713474	98	1.9	98	84	2	251	39	10	13	36	1.79
9714967--9715013	17	2.6	17	80	6	58	70	0	4	25	1.05
9731105--9731142	14	2.8	13	84	7	58	65	7	0	26	1.19
9733663--9733722	26	2.3	26	100	0	120	51	16	20	11	1.75
9753021--9753074	23	2.4	23	84	9	67	42	0	1	55	1.10
9776156--9776189	3	11.3	3	93	0	59	0	35	0	64	0.94
9776153--9776189	12	3.1	12	96	0	65	0	37	0	62	0.96
9788318--9788465	77	1.9	77	87	0	215	41	13	11	33	1.80
9793848--9793908	19	2.9	22	77	18	67	40	8	9	40	1.68
9793874--9793913	19	2.1	19	86	9	55	42	7	7	42	1.61
9794492--9794558	34	2.0	34	85	5	91	29	1	0	68	0.98
9794511--9794637	25	5.0	25	69	20	68	29	2	0	68	1.02
9794571--9794625	25	2.2	25	86	3	74	29	0	0	70	0.87
9794598--9794640	19	2.2	20	87	4	61	30	0	0	69	0.88
9798833--9798871	19	2.0	21	90	10	64	25	2	0	71	0.98
9800249--9800604	21	16.3	21	64	24	82	33	1	0	64	1.08
9800267--9800644	26	14.8	26	68	21	85	34	2	0	62	1.12
9800313--9800379	23	3.4	18	75	23	64	31	0	0	68	0.90
9800415--9800490	6	12.0	6	75	8	53	30	0	0	69	0.88
9800245--9800713	15	34.2	14	66	27	144	33	2	0	63	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9800240--9800674	112	4.0	112	91	6	707	34	2	0	63	1.10
9800283--9800728	29	15.6	29	66	24	132	32	2	0	64	1.11
9805474--9805522	23	2.1	23	100	0	98	30	8	12	48	1.69
9817864--9817889	2	13.0	2	100	0	52	50	0	0	50	1.00
9819730--9819777	2	25.0	2	91	8	82	50	0	0	50	1.00
9829208--9829286	36	2.2	36	95	0	140	39	3	15	41	1.65
9833303--9833371	29	2.3	29	82	9	77	37	2	2	56	1.29
9837489--9837557	29	2.4	30	83	9	81	33	1	2	62	1.19
9837514--9837563	14	3.4	15	75	20	52	38	4	2	56	1.30
9837513--9837587	29	2.5	29	79	12	71	34	4	5	56	1.41
9837866--9837909	22	2.0	22	82	8	54	45	2	4	47	1.35
9838808--9838842	3	11.7	3	93	0	61	34	31	2	31	1.73
9855074--9855248	27	6.4	27	79	7	174	45	3	5	45	1.42
9855058--9855248	54	3.5	54	81	5	206	47	3	4	44	1.41
9855068--9855302	54	4.2	54	75	11	163	45	5	4	43	1.47
9857600--9857633	18	1.9	18	94	5	61	35	2	0	61	1.11
9858434--9858488	28	1.9	29	85	3	76	34	0	1	63	1.05
9871821--9872471	350	1.9	341	87	2	878	33	13	12	38	1.83
9876012--9876041	7	4.1	7	95	4	51	30	30	13	26	1.94
9879009--9879042	2	17.0	2	87	0	50	44	55	0	0	0.99
9892800--9892860	15	4.1	15	89	0	86	32	6	27	32	1.83
9892996--9893179	56	3.2	58	73	18	186	36	2	1	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9893082--9893155	21	3.5	22	77	14	75	31	0	1	67	0.99
9893074--9893136	26	2.5	25	83	16	78	30	0	1	68	0.99
9893115--9893237	48	2.6	45	74	14	113	34	1	0	63	1.10
9893005--9893234	112	2.0	114	90	5	369	33	2	0	63	1.13
9893186--9893270	33	2.6	33	86	3	109	28	1	0	70	0.95
9893306--9893374	7	9.7	7	71	20	54	26	1	0	72	0.93
9893311--9893374	5	12.4	5	72	18	51	26	1	0	71	0.94
9893482--9893580	42	2.4	42	94	3	175	26	20	17	36	1.94
9914227--9914386	87	1.8	87	90	0	257	35	24	7	33	1.83
9915128--9915166	21	2.0	20	85	14	55	61	5	0	33	1.18
9915174--9915216	21	2.0	21	86	8	61	34	0	0	65	0.93
9919716--9919758	16	2.7	16	75	13	52	41	0	0	58	0.98
9938301--9938325	13	1.9	13	100	0	50	48	0	36	16	1.46
9957249--9957329	33	2.4	33	83	10	92	29	3	0	66	1.09
9957374--9957428	5	11.4	5	74	14	53	23	0	1	74	0.91
9958710--9958915	103	2.0	103	95	0	367	38	13	11	36	1.81
9963156--9963197	21	2.0	21	95	0	75	50	14	21	14	1.78
9965004--9965040	15	2.4	16	90	4	58	48	0	8	43	1.32
9965258--9965313	21	2.8	20	70	8	51	32	1	0	66	1.03
9971179--9971379	51	3.9	51	83	1	233	21	34	10	33	1.88
9972868--9972927	31	1.9	31	89	0	93	46	15	6	31	1.71
9983847--9983973	63	2.0	63	98	0	245	46	18	7	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10001249--10001277	15	1.9	15	100	0	58	27	20	13	37	1.91
10023052--10023114	26	2.7	23	83	11	67	50	0	3	46	1.17
10023073--10023115	13	3.2	14	74	12	54	51	0	2	46	1.13
10031885--10031973	44	2.0	44	93	0	151	52	8	16	21	1.71
10034925--10034969	19	2.4	18	82	13	56	51	2	2	44	1.26
10036181--10036208	1	28.0	1	100	0	56	0	0	100	0	0.00
10042548--10042609	31	2.1	28	85	8	79	22	1	0	75	0.88
10042723--10042764	21	2.0	22	85	4	59	23	2	2	71	1.10
10043285--10043335	13	3.9	12	87	12	66	76	0	1	21	0.88
10043293--10043323	16	1.9	16	93	0	53	77	0	0	22	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32