genome.fa.s1.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  28  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13585185--13585223	20	2.0	20	89	0	60	17	15	28	38	1.91
13585211--13585291	22	3.6	22	78	8	74	20	12	27	39	1.89
13585232--13585330	23	4.3	23	82	6	130	26	10	28	35	1.89
13585211--13585330	46	2.7	45	83	5	127	24	10	27	38	1.87
13587577--13587611	2	17.5	2	100	0	70	51	0	0	48	1.00
13594218--13594407	33	5.8	33	69	23	107	65	0	3	30	1.12
13594211--13594325	5	23.4	5	68	16	53	68	0	1	28	1.05
13594236--13594342	55	1.9	57	88	7	166	66	0	1	31	1.03
13594232--13594345	50	2.2	53	83	9	146	66	0	1	31	1.02
13594208--13594325	15	8.0	15	69	18	70	68	0	1	28	1.05
13601065--13601101	2	18.5	2	100	0	74	0	48	0	51	1.00
13602002--13602028	4	6.8	4	100	0	54	0	25	0	74	0.83
13610623--13610671	24	2.0	24	92	0	80	34	22	28	14	1.93
13621412--13623093	860	2.0	860	100	0	3364	34	11	20	33	1.88
13624164--13624292	51	2.5	52	88	2	179	34	8	13	43	1.75
13626882--13626964	30	2.8	29	83	8	96	32	13	8	45	1.73
13629628--13629691	31	2.1	31	100	0	128	46	12	12	28	1.78
13640119--13640203	36	2.4	36	87	0	116	35	29	8	27	1.86
13644460--13644485	10	2.6	10	100	0	52	15	30	11	42	1.82
13647742--13647840	52	1.9	52	83	4	128	23	19	13	44	1.85
13647982--13648031	21	2.5	20	83	6	64	38	18	8	36	1.80
13656759--13656793	18	1.9	18	88	0	52	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13656830--13657077	14	18.2	14	64	29	60	63	1	3	32	1.18
13656830--13656874	12	3.5	14	80	17	53	73	0	0	26	0.84
13656944--13657004	15	4.3	13	82	15	68	70	0	0	29	0.88
13656940--13657015	24	3.2	24	74	22	72	69	0	0	30	0.88
13656947--13657008	21	3.0	21	79	13	74	69	0	0	30	0.89
13656901--13657082	52	3.3	53	74	15	156	62	0	3	34	1.16
13657231--13657284	15	3.6	15	85	5	65	33	22	7	37	1.82
13659150--13659198	21	2.3	21	100	0	98	32	14	14	38	1.86
13669110--13669175	32	2.0	33	97	2	125	30	15	12	42	1.83
13670184--13670289	36	2.9	36	82	0	140	50	17	13	17	1.77
13670818--13670844	2	13.5	2	100	0	54	48	0	0	51	1.00
13671792--13671839	17	2.8	17	75	9	53	64	2	0	33	1.05
13673883--13673965	28	3.0	28	80	0	94	45	16	14	22	1.84
13673892--13673977	28	3.1	27	77	8	84	41	16	17	24	1.89
13677833--13677918	37	2.3	38	93	4	156	39	16	12	31	1.86
13680397--13680431	17	2.1	17	89	10	54	37	0	2	60	1.12
13680575--13680667	29	3.2	29	80	7	107	63	0	1	35	1.02
13680599--13680666	25	2.8	24	73	6	73	66	0	0	33	0.92
13682308--13682343	17	2.1	18	89	5	56	52	0	0	47	1.00
13682311--13682373	17	3.6	17	77	18	51	52	1	0	46	1.10
13682329--13682380	20	2.8	18	75	13	52	51	1	0	46	1.12
13682342--13682380	20	2.0	20	89	0	60	51	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13682374--13682407	17	2.0	17	88	0	50	44	0	5	50	1.26
13689285--13689369	27	3.1	27	79	11	93	51	15	16	16	1.76
13690508--13690533	3	8.7	3	100	0	52	69	30	0	0	0.89
13697173--13697278	37	2.8	37	88	1	158	34	19	15	30	1.93
13699605--13699656	21	2.5	20	75	9	50	63	9	1	25	1.35
13699632--13699663	15	2.1	15	94	0	55	62	12	0	25	1.30
13700620--13700657	19	2.1	18	90	5	58	47	5	0	47	1.24
13701600--13701664	30	2.1	31	88	2	96	53	4	10	30	1.56
13712090--13712323	117	2.0	117	96	0	432	32	16	18	32	1.93
13715449--13715518	34	2.1	33	94	5	124	35	2	35	25	1.71
13734250--13735160	116	7.9	117	71	8	506	41	9	3	45	1.54
13734190--13735285	347	3.2	346	84	4	1404	41	9	3	45	1.53
13738165--13738352	96	2.0	96	98	0	367	30	18	7	44	1.77
13740167--13740472	47	6.5	46	78	9	298	23	14	32	29	1.94
13740271--13740347	23	3.3	23	69	3	73	23	14	32	29	1.94
13740153--13740472	92	3.4	90	82	7	354	24	14	32	29	1.94
13740339--13740421	24	3.4	24	78	6	94	21	9	34	33	1.86
13740422--13740537	59	2.0	59	87	3	171	30	19	29	20	1.97
13740540--13740593	24	2.3	24	84	9	67	24	22	29	24	1.99
13741219--13741634	31	13.5	31	87	2	559	28	14	20	35	1.92
13744233--13744291	29	2.1	29	87	3	84	47	11	8	32	1.70
13744273--13744355	30	2.8	30	83	8	98	45	8	13	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13744245--13744355	29	3.8	29	81	9	100	45	9	12	32	1.73
13745404--13745597	22	8.8	22	75	10	191	37	18	15	28	1.91
13745404--13745597	44	4.4	44	85	5	266	37	18	15	28	1.91
13746245--13746282	15	2.5	15	100	0	76	7	34	23	34	1.84
13751217--13751315	32	2.9	35	76	14	125	28	10	25	36	1.88
13751206--13751338	67	2.0	67	88	2	196	27	11	24	36	1.90
13751206--13751307	32	3.1	32	76	15	118	26	9	22	41	1.85
13760564--13760620	29	2.0	29	85	0	78	24	8	17	49	1.75
13771082--13771167	29	3.0	29	92	0	136	22	10	19	47	1.79
13771092--13771183	29	3.3	29	87	4	82	26	8	17	47	1.76
13775574--13775640	32	2.0	34	82	5	84	25	10	23	40	1.86
13779623--13779690	35	1.9	35	84	0	91	39	13	25	22	1.90
13789348--13789406	26	2.2	25	80	16	66	50	3	1	44	1.28
13789367--13789420	28	2.0	26	82	7	63	48	3	0	48	1.19
13789367--13789718	151	2.3	151	81	4	404	49	4	3	42	1.40
13789478--13789761	151	1.9	150	80	7	333	51	4	2	40	1.37
13789706--13789760	26	2.1	27	83	10	69	58	0	0	41	0.98
13789946--13790010	19	3.3	19	72	16	60	58	0	1	40	1.07
13789938--13790023	41	2.1	41	85	8	113	55	1	2	40	1.20
13790016--13790068	27	2.0	27	89	7	83	52	1	0	45	1.11
13794986--13795030	23	2.0	23	81	0	54	62	0	0	37	0.96
13795258--13795326	35	2.0	35	91	0	111	43	18	18	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13795268--13795345	35	2.2	35	86	0	102	44	21	16	16	1.86
13802161--13802244	35	2.4	35	83	0	105	51	14	11	22	1.75
13809466--13809491	2	13.0	2	100	0	52	50	0	0	50	1.00
13815620--13815669	15	3.4	15	77	2	57	62	0	38	0	0.96
13815616--13815669	22	2.5	23	82	8	60	64	0	35	0	0.94
13838471--13838512	22	2.0	22	85	4	59	45	4	2	47	1.36
13839041--13839074	2	17.0	2	100	0	68	0	0	50	50	1.00
13841852--13841932	40	2.0	42	82	4	103	18	19	23	38	1.93
13842932--13843013	31	2.7	31	80	10	82	32	3	2	60	1.27
13842929--13843013	29	2.8	30	82	8	93	32	3	2	61	1.26
13849264--13849294	2	15.5	2	93	0	53	48	0	3	48	1.17
13852452--13852481	2	15.0	2	92	0	51	50	3	0	46	1.18
13865665--13865747	41	2.0	41	100	0	166	37	16	14	31	1.89
13866028--13866072	21	2.2	20	84	4	54	48	4	4	42	1.43
13869426--13869493	34	2.0	34	100	0	136	32	35	0	32	1.58
13880620--13880656	19	1.9	19	88	0	56	8	0	10	81	0.89
13881856--13881958	34	3.0	34	82	4	118	33	5	17	42	1.73
13883680--13883758	29	2.7	30	75	18	85	49	1	1	48	1.17
13883742--13883798	25	2.1	27	84	15	75	49	3	1	45	1.29
13883684--13883784	42	2.4	43	84	9	122	49	1	0	47	1.19
13883976--13884030	27	2.1	27	86	3	76	56	1	0	41	1.10
13883861--13884242	202	1.9	202	86	5	549	53	2	1	41	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13884071--13884186	41	2.8	40	74	12	101	53	4	0	41	1.26
13884758--13884798	22	1.9	21	85	5	55	60	9	0	29	1.28
13885255--13885305	16	3.1	16	75	13	50	78	0	0	21	0.75
13885237--13885305	32	2.1	33	84	7	88	73	0	1	24	0.91
13885257--13885301	15	3.2	14	81	9	56	77	0	0	22	0.76
13885542--13885582	10	4.2	10	81	6	57	70	0	2	26	0.99
13885535--13885585	19	2.9	17	83	11	66	64	0	1	33	1.05
13885535--13885607	37	2.0	36	81	2	83	61	0	4	34	1.15
13898661--13898760	50	2.0	50	94	0	173	26	17	13	44	1.84
13909738--13909793	23	2.5	23	85	5	80	57	12	8	21	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32