genome.fa.s1.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397254.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_30.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15579451

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  21  of  32  ( 3821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10998576--10998762	31	6.0	31	70	5	126	35	17	16	29	1.92
10999514--10999576	21	3.2	20	80	13	69	71	0	28	0	0.86
10999515--10999580	12	5.3	12	71	12	53	72	0	27	0	0.85
10999629--10999678	17	3.0	17	80	19	61	72	0	28	0	0.86
10999613--10999661	23	2.3	22	79	10	57	69	0	26	4	1.06
10999629--10999662	16	2.1	17	88	5	52	73	0	26	0	0.83
10999637--10999678	8	5.1	8	78	16	50	73	0	26	0	0.83
10999701--10999847	14	9.5	15	67	23	65	65	1	31	0	1.06
10999780--10999852	20	3.6	20	78	15	71	65	0	34	0	0.93
10999782--10999851	33	2.1	34	86	7	99	65	0	34	0	0.93
10999817--10999878	23	2.8	21	79	15	63	69	1	29	0	0.98
10999713--10999854	19	7.6	19	66	22	61	65	1	32	0	1.06
11000366--11000419	28	2.0	27	88	3	81	55	3	7	33	1.45
11012290--11012384	32	3.2	29	77	7	86	36	12	13	36	1.83
11012453--11012586	45	3.0	44	79	4	142	32	17	14	35	1.91
11015699--11015735	14	2.5	15	91	4	58	37	0	0	62	0.96
11015887--11015965	5	15.2	5	72	17	54	69	1	1	27	1.04
11015885--11015916	15	2.1	15	100	0	64	65	0	0	34	0.93
11015881--11015954	33	2.3	33	84	13	93	67	1	1	29	1.07
11015884--11016038	50	3.0	50	75	11	147	66	1	1	30	1.10
11015888--11016074	88	2.1	91	75	16	196	66	1	2	29	1.15
11016300--11016351	15	3.5	15	89	0	77	36	17	3	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11016300--11016358	30	1.9	31	89	3	93	37	15	5	42	1.69
11027228--11027286	21	2.8	21	89	0	82	38	18	23	18	1.93
11027271--11027466	101	1.9	101	90	0	311	36	13	25	25	1.92
11027459--11027591	70	1.9	70	100	0	266	36	12	27	23	1.91
11029992--11030035	21	2.1	21	91	0	70	34	15	22	27	1.95
11030031--11030106	25	3.0	25	96	0	143	30	1	36	31	1.66
11031612--11031636	12	2.1	12	100	0	50	40	0	16	44	1.47
11034162--11034221	29	2.1	29	90	0	93	36	3	1	58	1.25
11034770--11034807	19	1.9	19	89	5	58	68	0	0	31	0.90
11034760--11034815	20	2.7	21	75	10	62	60	0	0	39	0.97
11035635--11035673	16	2.5	15	84	8	51	30	0	0	69	0.89
11036722--11036758	17	2.2	18	90	9	60	75	0	0	24	0.80
11036947--11037005	30	2.0	30	82	0	73	49	0	0	50	1.00
11037156--11037261	28	3.9	27	82	6	124	46	0	2	50	1.22
11037156--11037285	55	2.4	56	84	3	165	45	0	4	49	1.28
11037144--11037285	27	5.1	27	78	7	133	42	0	4	51	1.28
11039150--11039188	16	2.5	15	84	8	51	30	0	0	69	0.89
11039162--11039196	16	2.2	16	90	5	54	20	0	2	77	0.90
11040234--11040271	17	2.1	19	85	14	53	76	0	0	23	0.79
11040234--11040271	18	2.1	19	90	9	62	76	0	0	23	0.79
11040459--11040517	30	2.0	30	86	0	82	47	0	0	52	1.00
11040655--11040793	27	5.1	27	82	0	143	42	0	5	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11040666--11040789	54	2.3	54	85	2	160	45	0	4	49	1.29
11040642--11040802	81	2.0	80	81	1	187	43	1	5	49	1.34
11041770--11041803	13	2.5	14	90	4	52	50	0	0	50	1.00
11041781--11041839	20	2.8	21	72	12	59	59	0	0	40	0.97
11041847--11041885	19	2.0	20	85	5	53	28	2	2	66	1.18
11044361--11044429	17	4.0	16	76	14	66	17	7	1	73	1.12
11044361--11044429	18	3.9	17	78	17	70	17	7	1	73	1.12
11044555--11044676	43	2.8	43	81	4	149	40	16	14	28	1.88
11044752--11045038	92	3.1	93	77	8	259	38	7	20	33	1.81
11044752--11044993	23	10.5	23	67	13	77	36	7	21	34	1.81
11044838--11044970	46	2.9	47	77	11	134	33	7	23	35	1.83
11054827--11054870	8	5.4	8	81	5	52	40	2	2	54	1.25
11054827--11054876	17	3.1	16	77	8	57	42	4	2	52	1.31
11055377--11055429	17	3.0	17	81	15	63	41	11	0	47	1.39
11055377--11055428	8	6.0	8	76	24	52	40	11	0	48	1.40
11072442--11072485	23	1.9	23	85	0	61	4	13	0	81	0.83
11072508--11072571	11	6.1	11	71	21	57	4	17	0	78	0.92
11072442--11072570	31	3.9	31	72	17	84	6	17	0	75	1.07
11073041--11073107	26	2.5	27	83	11	84	13	13	0	73	1.11
11073065--11073113	25	2.0	25	88	8	73	12	14	0	73	1.10
11074797--11075056	81	3.2	81	84	3	332	41	7	8	43	1.62
11079121--11079283	35	4.6	35	80	3	148	38	7	9	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11079094--11079283	71	2.7	69	77	13	201	38	6	8	45	1.61
11079094--11079311	106	2.1	103	82	2	256	38	6	10	44	1.65
11092454--11092483	14	2.1	15	93	6	53	80	0	20	0	0.72
11097504--11097542	20	2.0	20	84	0	51	35	5	7	51	1.53
11107771--11107806	15	2.6	14	87	12	56	44	2	0	52	1.15
11107762--11107834	36	2.0	36	84	7	94	42	4	0	53	1.20
11111120--11111166	17	2.6	18	71	21	53	46	6	0	46	1.28
11111506--11111539	18	1.9	18	88	5	52	41	2	0	55	1.15
11114059--11114128	34	2.1	34	89	7	108	21	18	18	41	1.91
11114063--11114136	34	2.2	34	85	9	98	21	24	17	36	1.95
11118064--11118089	11	2.4	11	100	0	52	65	7	0	26	1.20
11124771--11124812	18	2.4	18	80	4	50	57	0	0	42	0.99
11125041--11125096	14	4.0	14	84	9	62	64	0	0	35	0.94
11125268--11125334	9	6.8	10	73	11	50	62	1	1	34	1.13
11132175--11132220	21	2.2	21	84	7	58	45	15	19	19	1.85
11156892--11156932	10	4.2	10	81	12	50	53	2	0	43	1.13
11156969--11157004	18	2.0	18	88	0	54	50	0	0	50	1.00
11159657--11159757	49	2.1	49	96	0	184	36	11	3	47	1.59
11164470--11164509	21	1.9	21	94	0	71	50	0	0	50	1.00
11173347--11173376	2	15.0	2	100	0	60	0	50	0	50	1.00
11174224--11174260	18	2.1	18	89	0	56	43	2	10	43	1.53
11176049--11176106	30	1.9	30	92	0	98	29	5	12	53	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11179637--11179680	16	2.6	17	86	13	65	72	0	0	27	0.85
11179637--11179678	8	5.1	8	88	11	59	73	0	0	26	0.83
11179711--11179743	12	2.8	12	90	0	57	54	0	0	45	0.99
11183350--11183375	2	13.0	2	100	0	52	50	0	50	0	1.00
11190448--11190890	218	2.0	219	88	3	667	42	16	18	22	1.89
11191553--11191672	60	2.0	60	88	3	179	39	20	15	25	1.92
11198373--11198411	13	2.9	14	85	7	55	51	0	2	46	1.14
11198465--11198513	25	2.0	25	84	8	64	51	0	2	46	1.12
11198510--11198550	19	2.1	19	86	4	55	70	0	0	29	0.87
11201803--11201864	30	2.1	30	82	8	74	24	30	24	20	1.99
11202446--11202474	2	14.5	2	100	0	58	51	0	0	48	1.00
11204176--11204221	22	2.1	22	100	0	92	39	4	36	19	1.72
11217694--11217819	45	2.8	46	75	3	112	38	11	14	36	1.81
11217797--11217852	28	2.0	27	83	13	69	41	14	10	33	1.80
11217793--11217881	29	3.4	25	73	16	74	38	15	13	32	1.87
11217889--11217951	29	2.2	29	88	0	90	49	6	6	38	1.54
11218538--11218567	10	3.0	10	90	0	51	63	0	0	36	0.95
11219000--11219024	2	12.5	2	100	0	50	48	0	0	52	1.00
11225085--11225142	16	3.7	16	75	13	66	46	0	0	53	1.00
11225102--11225160	15	4.1	15	76	14	52	52	0	0	47	1.00
11225090--11225151	31	2.0	30	87	3	88	51	0	0	48	1.00
11225089--11225158	27	2.4	27	83	9	86	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11256870--11256896	8	3.4	8	100	0	54	48	0	0	51	1.00
11256867--11256905	15	2.5	15	84	15	53	48	0	0	51	1.00
11257427--11257462	17	2.1	18	89	5	56	50	8	0	41	1.33
11270907--11270931	2	12.5	2	100	0	50	52	0	0	48	1.00
11272757--11272793	18	2.0	19	89	5	58	45	2	5	45	1.40
11280370--11280680	151	2.1	151	93	0	532	27	12	20	39	1.89
11288940--11288973	16	2.2	16	89	5	52	61	0	0	38	0.96
11289115--11289169	14	3.9	14	73	15	51	72	0	1	25	0.94
11289329--11289353	13	1.9	13	100	0	50	48	0	8	44	1.32
11291491--11291516	13	2.0	13	100	0	52	30	30	23	15	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32