genome.fa.s8094.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008094.1 Hibiscus syriacus cultivar Beakdansim tig00110610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9952466

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  10  of  43  ( 5090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1792602--1792837	124	1.9	122	86	3	339	26	16	17	39	1.91
1792780--1793384	39	15.6	39	86	1	768	22	24	11	41	1.87
1793072--1793135	19	3.3	19	64	20	51	20	28	10	40	1.86
1794545--1794649	54	1.9	54	86	0	147	27	23	13	35	1.92
1800108--1800151	14	3.3	15	73	26	53	61	6	11	20	1.52
1802771--1802795	11	2.3	11	100	0	50	68	0	0	32	0.90
1805338--1805374	19	1.9	19	94	0	65	32	29	16	21	1.95
1806346--1806399	24	2.2	24	83	0	72	22	16	20	40	1.91
1808660--1808694	18	1.9	18	94	0	61	54	25	2	17	1.57
1808865--1809064	20	10.6	20	76	12	181	35	21	17	26	1.95
1808865--1809064	54	3.6	54	86	4	238	35	21	17	26	1.95
1809108--1809171	20	3.2	20	90	0	101	12	17	23	46	1.81
1809307--1809341	14	2.5	14	95	0	61	51	17	0	31	1.45
1810716--1810838	21	5.9	21	71	13	83	26	17	34	21	1.95
1810746--1810838	42	2.2	42	84	3	125	26	16	37	19	1.92
1811166--1811210	20	2.2	20	92	0	72	51	17	11	20	1.75
1811197--1811265	20	3.5	20	84	4	77	36	26	20	17	1.94
1811257--1811332	33	2.3	34	90	2	118	44	19	21	14	1.86
1811299--1811336	20	1.9	20	94	0	67	47	18	21	13	1.82
1811332--1811457	20	6.4	20	78	9	91	14	16	23	45	1.84
1813338--1813393	20	2.8	20	80	0	67	51	17	16	14	1.76
1813851--1813897	22	2.1	22	96	0	85	23	14	40	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814072--1814257	20	9.2	20	80	6	144	25	18	24	32	1.97
1814049--1814178	61	2.1	61	86	0	188	23	16	26	33	1.95
1814863--1814905	22	1.9	23	90	4	70	48	2	0	48	1.14
1815048--1815133	21	4.0	21	71	15	59	46	0	3	50	1.18
1815048--1815110	23	2.8	22	77	13	58	47	0	3	49	1.17
1815244--1815351	13	9.0	13	68	22	58	47	0	2	49	1.22
1815292--1815379	42	2.0	41	85	12	115	47	1	0	51	1.08
1815395--1815420	2	13.0	2	100	0	52	50	0	0	50	1.00
1816529--1816578	25	2.0	25	92	0	82	30	14	10	46	1.77
1816961--1817094	29	4.7	29	76	9	105	34	4	11	50	1.58
1816961--1817100	56	2.5	56	83	2	154	34	4	10	50	1.57
1816989--1817115	29	4.4	29	80	5	134	33	6	8	51	1.58
1818802--1818905	3	34.7	3	98	0	199	66	0	0	32	0.98
1819864--1819962	29	3.3	29	84	8	128	36	11	13	39	1.80
1819823--1819998	60	3.0	57	75	12	158	34	13	10	41	1.79
1820014--1820093	31	2.7	29	74	14	81	40	8	11	40	1.72
1820175--1820278	28	3.6	28	81	7	127	35	14	12	37	1.84
1820374--1820477	30	3.6	28	79	15	113	37	10	12	39	1.78
1820379--1820477	29	3.4	28	75	21	89	36	11	12	40	1.78
1826405--1826463	21	2.8	21	94	0	100	22	6	20	50	1.71
1826803--1826887	41	2.0	42	84	4	109	35	18	16	29	1.93
1829272--1829303	16	2.0	16	93	0	55	28	15	0	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1834341--1834425	35	2.4	34	79	12	93	56	8	7	28	1.55
1836726--1836782	11	5.1	12	73	16	59	64	1	0	33	1.04
1836719--1836782	21	2.8	23	86	11	80	65	1	0	32	1.02
1839124--1839175	23	2.3	23	89	0	77	38	5	21	34	1.77
1839088--1839249	87	1.9	87	88	0	243	41	8	14	35	1.76
1839267--1839773	199	2.5	199	82	5	598	32	14	14	39	1.85
1842425--1842473	19	2.6	19	83	0	71	53	8	4	34	1.50
1843894--1844855	199	4.9	198	81	5	1032	32	14	13	39	1.85
1843897--1844855	394	2.4	396	82	4	1132	32	14	13	39	1.85
1847999--1849140	199	5.8	198	79	8	983	32	16	13	36	1.88
1848355--1849122	178	4.1	180	77	12	573	31	17	14	36	1.90
1848535--1849140	200	3.0	199	86	3	914	31	16	14	37	1.89
1850989--1851045	18	3.2	18	87	0	87	7	35	1	56	1.37
1851220--1851285	21	3.1	21	97	0	123	27	50	0	22	1.50
1851329--1851372	21	2.1	21	95	0	79	13	36	11	38	1.81
1853788--1854356	182	3.1	182	93	0	931	27	17	14	40	1.89
1856479--1856567	29	3.1	29	85	0	97	23	40	21	14	1.90
1856817--1856874	26	2.3	26	90	3	91	48	8	36	6	1.61
1857015--1857055	22	1.9	21	85	5	55	26	0	19	53	1.45
1857068--1857190	39	3.1	39	70	19	108	39	0	12	47	1.47
1857107--1857197	45	2.0	47	85	8	125	39	1	12	47	1.48
1859603--1859650	14	3.6	14	81	16	66	47	16	0	35	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1859602--1859650	25	2.0	25	95	0	89	46	16	0	36	1.47
1859602--1859660	25	2.6	22	86	10	75	49	13	0	37	1.43
1859602--1859671	21	3.1	22	80	12	63	50	11	0	38	1.39
1859618--1859865	59	4.2	60	93	2	430	46	12	0	40	1.42
1859671--1859816	10	14.7	10	69	19	56	45	13	0	41	1.44
1859681--1860278	49	11.3	49	85	11	703	46	12	0	41	1.43
1859622--1860282	266	2.4	266	94	2	1142	46	12	0	41	1.42
1859957--1860041	21	4.2	20	65	22	52	44	12	1	41	1.50
1860056--1860082	10	2.7	10	100	0	54	40	18	0	40	1.51
1860081--1860155	24	3.1	24	69	3	78	52	8	0	40	1.31
1860097--1860221	18	7.5	17	66	13	55	48	8	0	44	1.32
1863789--1863850	28	2.1	30	94	5	110	56	12	0	30	1.37
1864274--1864317	23	1.9	23	100	0	88	27	27	22	22	1.99
1865494--1865527	18	1.9	18	88	5	52	17	17	2	61	1.46
1867138--1867190	21	2.5	21	75	6	54	22	24	16	35	1.95
1867199--1867313	20	5.7	20	81	9	117	33	25	19	22	1.97
1867197--1867333	41	3.4	41	76	8	145	35	24	18	21	1.96
1867913--1867977	19	3.7	19	86	13	95	13	21	18	46	1.84
1869556--1869644	42	2.1	42	85	0	115	20	14	41	23	1.89
1869584--1869646	21	3.0	21	70	9	65	22	12	39	25	1.89
1870012--1870066	20	2.8	20	91	2	94	30	21	29	18	1.97
1870051--1870109	19	3.4	18	73	22	63	49	20	16	13	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870067--1870125	14	3.9	14	76	20	64	50	23	15	10	1.74
1870051--1870130	33	2.4	33	93	0	142	48	22	17	11	1.78
1870137--1870219	19	4.6	19	76	14	95	15	20	18	45	1.85
1870204--1870258	20	2.8	19	83	8	65	16	23	23	36	1.94
1870793--1870840	18	2.7	18	93	0	87	14	12	45	27	1.81
1872160--1872218	20	3.0	20	87	0	73	44	22	18	15	1.87
1872467--1872510	22	2.0	22	86	0	61	20	13	45	20	1.85
1872697--1872768	20	3.6	20	90	0	117	25	19	27	27	1.99
1875144--1875199	21	2.7	21	88	0	85	32	10	28	28	1.90
1875783--1875817	2	17.5	2	100	0	70	48	0	0	51	1.00
1877299--1877362	23	2.8	23	90	0	101	26	26	28	18	1.98
1877382--1877587	103	2.0	103	93	0	349	37	22	11	27	1.89
1879883--1879925	17	2.6	16	78	7	50	39	25	0	34	1.56
1882665--1882728	23	2.8	23	79	13	78	29	26	25	18	1.98
1882744--1882956	103	2.1	103	96	1	392	36	23	13	26	1.92
1884328--1884383	20	2.7	21	91	5	87	19	25	25	30	1.98
1887241--1887318	29	2.8	27	84	7	102	30	2	3	62	1.26
1887300--1887374	31	2.5	28	78	16	80	37	4	1	57	1.26
1888574--1888610	18	2.1	18	100	0	74	43	16	16	24	1.87
1901070--1901176	42	2.6	43	82	8	123	31	19	18	29	1.96
1901087--1901191	42	2.5	42	85	0	129	25	20	16	37	1.93
1913570--1913607	19	2.0	19	89	0	58	23	13	21	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915360--1915575	111	2.0	112	82	9	275	29	14	21	34	1.93
1915556--1915621	21	3.2	21	89	2	98	34	9	25	30	1.87
1918045--1918111	21	3.2	21	91	0	107	37	8	23	29	1.86
1938970--1939038	21	3.2	21	85	6	84	21	33	26	18	1.97
1938958--1939039	23	3.7	22	87	4	103	23	31	26	18	1.97
1938958--1939042	22	3.9	22	83	6	91	22	31	27	18	1.97
1940576--1940612	18	2.1	18	90	10	58	45	24	29	0	1.53
1942701--1942756	23	2.5	23	94	2	96	41	12	16	30	1.85
1951108--1951680	284	2.0	284	97	0	1074	35	24	15	25	1.94
1965937--1965968	16	1.9	17	93	6	57	25	3	0	71	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43