genome.fa.s8094.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008094.1 Hibiscus syriacus cultivar Beakdansim tig00110610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9952466

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  43  of  43  ( 5090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9740827--9741097	49	5.5	49	86	2	391	41	16	18	23	1.89
9740820--9741097	99	2.8	98	88	1	439	42	16	18	23	1.89
9746251--9746289	15	2.5	15	87	4	51	48	10	17	23	1.78
9747388--9747632	49	5.0	49	93	0	400	38	15	20	25	1.91
9748121--9748164	22	2.0	22	86	4	63	36	0	9	54	1.32
9749624--9749793	91	1.9	91	86	4	245	25	12	12	48	1.76
9753490--9753535	2	23.5	2	95	4	85	52	0	0	47	1.00
9753692--9753741	26	1.9	26	88	8	75	34	18	22	26	1.96
9760673--9760720	20	2.5	19	82	3	60	79	0	14	6	0.92
9760675--9760734	31	1.9	31	83	12	79	78	0	15	6	0.95
9762119--9762357	130	1.8	130	80	2	284	32	16	18	31	1.94
9762269--9762519	128	2.0	128	80	1	288	33	16	18	31	1.93
9776527--9776577	25	2.0	26	84	3	68	13	11	7	66	1.43
9790912--9790939	12	2.3	12	100	0	56	0	0	14	85	0.59
9790921--9790979	10	5.9	10	76	7	57	0	8	10	81	0.88
9790922--9790978	9	5.9	9	76	10	51	0	8	10	80	0.90
9804123--9804171	22	2.2	22	85	0	62	20	26	26	26	1.99
9804091--9804172	22	3.8	21	73	10	58	24	21	29	24	1.99
9808041--9808085	22	2.0	22	83	8	56	24	11	6	57	1.57
9812214--9812246	12	2.6	13	90	4	50	36	12	6	45	1.66
9815467--9815492	13	2.0	13	100	0	52	46	15	7	30	1.74
9821498--9821538	15	2.7	15	96	0	73	41	4	34	19	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9846077--9846128	22	2.4	22	93	0	86	36	3	7	51	1.49
9851496--9851520	2	12.5	2	100	0	50	48	0	0	52	1.00
9870013--9870078	33	2.0	33	91	5	107	45	13	28	12	1.80
9877946--9877978	12	2.7	12	95	4	57	81	0	3	15	0.80
9881517--9881568	2	26.0	2	88	0	77	50	5	0	44	1.26
9884136--9884618	45	10.8	45	93	1	794	40	6	21	31	1.78
9884136--9884600	224	2.1	224	93	2	790	40	6	21	31	1.78
9887426--9887496	12	6.1	11	80	15	63	73	0	22	4	1.01
9887428--9887507	18	4.6	17	74	23	69	72	0	22	5	1.04
9887442--9887496	3	19.7	3	78	17	57	72	0	25	1	0.94
9887522--9887585	2	32.0	2	100	0	128	50	0	0	50	1.00
9891460--9891943	45	10.8	45	92	0	756	41	6	21	30	1.78
9891751--9891824	24	3.2	24	61	24	59	44	2	20	32	1.65
9899161--9899318	53	3.0	53	85	0	228	25	15	19	38	1.92
9906031--9906178	53	2.8	53	89	0	224	27	16	18	37	1.92
9919736--9919775	14	2.8	13	85	14	53	10	5	0	85	0.75
9919747--9919793	12	4.1	11	78	15	51	4	12	0	82	0.80
9919736--9919791	18	3.1	18	79	7	60	7	8	0	83	0.80
9919746--9919798	26	2.1	26	82	10	65	5	13	0	81	0.86
9919748--9919790	11	3.9	11	88	11	61	4	11	0	83	0.78
9928391--9928416	2	13.0	2	100	0	52	50	0	0	50	1.00
9939609--9939641	17	1.9	17	93	0	57	33	0	12	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9939740--9939929	94	2.0	97	88	4	287	23	17	12	46	1.81
9943481--9943526	22	2.2	21	88	7	67	36	30	0	32	1.58
9944044--9944091	22	2.2	22	96	0	87	37	31	0	31	1.58
9947123--9947198	36	2.1	36	97	0	143	43	14	10	31	1.79
9951662--9951691	15	2.0	15	100	0	60	13	46	26	13	1.80
9952112--9952187	36	2.1	36	97	0	143	43	14	10	31	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43

The End!