genome.fa.s8094.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008094.1 Hibiscus syriacus cultivar Beakdansim tig00110610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9952466

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  27  of  43  ( 5090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5582673--5582722	23	2.2	23	85	7	66	78	2	2	18	0.95
5584790--5585240	106	4.3	106	94	1	789	23	18	25	33	1.97
5584790--5586068	105	12.2	105	93	2	1960	22	18	25	33	1.96
5589734--5589784	18	2.9	17	91	5	75	78	1	1	17	0.94
5589736--5589785	23	2.2	23	85	7	66	78	2	2	18	0.95
5600728--5600789	31	2.0	31	90	0	97	33	9	27	29	1.88
5603926--5604039	21	5.6	21	73	8	92	24	0	29	44	1.60
5603964--5604039	14	5.5	14	80	9	75	27	1	26	44	1.62
5603994--5604045	27	1.9	27	88	0	77	28	0	23	48	1.51
5603994--5604045	14	3.8	13	84	5	50	28	0	23	48	1.51
5603994--5604049	20	2.8	20	84	13	62	30	0	21	48	1.51
5604136--5604177	18	2.4	17	81	14	50	76	0	11	11	1.03
5604693--5604743	20	2.7	19	80	14	52	31	3	0	64	1.11
5604930--5604956	14	1.9	14	100	0	54	29	0	7	62	1.22
5605951--5606008	2	29.5	2	96	3	109	51	0	0	48	1.00
5606605--5606658	21	2.6	21	75	0	63	24	25	20	29	1.99
5606991--5607046	15	3.7	14	76	21	51	17	1	7	73	1.15
5616352--5616390	20	2.0	20	84	0	51	23	7	23	46	1.78
5616550--5616589	21	1.9	21	89	0	62	10	25	40	25	1.86
5616572--5616632	20	2.9	21	87	7	79	18	26	34	21	1.96
5654954--5655014	25	2.4	26	94	2	99	29	11	13	45	1.78
5654962--5655014	25	2.1	25	100	0	106	33	13	11	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5659593--5659759	90	1.9	89	97	1	316	43	4	9	42	1.58
5669352--5669462	49	2.2	50	88	1	161	22	15	27	35	1.94
5672399--5672442	17	2.6	17	81	0	52	45	2	2	50	1.27
5680214--5680247	11	3.0	11	91	4	50	20	2	0	76	0.92
5681510--5681650	79	1.9	77	85	10	202	29	2	9	58	1.42
5683870--5684006	71	1.9	74	86	4	199	39	18	7	34	1.79
5683870--5684006	36	3.8	36	72	5	107	39	18	7	34	1.79
5686808--5686871	17	3.6	17	81	6	65	42	9	12	35	1.75
5691521--5691563	18	2.4	19	84	7	54	67	2	9	20	1.30
5704145--5704203	27	2.1	27	84	3	73	22	11	16	49	1.78
5718129--5718170	19	2.2	19	86	0	57	45	9	7	38	1.64
5719583--5719640	30	1.9	30	96	0	107	31	3	18	46	1.66
5719722--5719779	21	2.8	21	94	0	98	20	32	20	25	1.97
5719766--5719821	20	2.6	22	86	5	71	26	28	19	25	1.99
5719859--5719904	8	6.2	8	76	19	55	23	34	15	26	1.94
5719868--5719905	20	1.9	20	94	0	67	26	34	15	23	1.95
5719849--5719901	13	3.9	13	77	18	54	22	33	15	28	1.94
5720259--5720327	34	2.1	32	89	5	102	31	15	30	21	1.95
5721836--5721881	19	2.3	20	81	3	58	26	13	6	54	1.62
5722541--5722594	23	2.3	23	90	0	81	25	11	40	22	1.87
5723396--5723455	30	2.0	30	90	6	95	43	15	6	35	1.72
5725758--5725797	12	3.2	12	85	7	53	32	0	30	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5727281--5727344	19	3.2	20	72	14	53	43	1	1	53	1.19
5727290--5727339	20	2.5	20	78	12	59	40	2	2	56	1.22
5727258--5727343	31	2.8	30	79	10	93	41	1	3	53	1.25
5728064--5728150	31	2.8	31	76	10	88	52	3	1	42	1.25
5736200--5736279	35	2.3	35	91	0	133	32	0	23	43	1.54
5746685--5746741	17	3.1	17	72	18	60	40	8	12	38	1.74
5746699--5746761	21	3.2	21	69	17	62	36	7	12	42	1.72
5746685--5746761	38	2.0	38	94	0	136	38	7	12	40	1.73
5764547--5764590	23	1.9	23	86	9	63	50	11	6	31	1.65
5769321--5769417	44	2.2	43	83	5	115	37	24	12	25	1.91
5773080--5773130	20	2.6	20	90	3	77	35	15	5	43	1.71
5777455--5777488	6	5.5	6	93	6	59	14	0	0	85	0.60
5777455--5777493	18	2.2	18	86	9	53	15	0	2	82	0.79
5779155--5781795	927	2.9	925	92	2	4262	31	12	18	38	1.87
5781384--5781424	11	3.6	11	90	6	64	24	7	9	58	1.55
5781387--5781426	12	3.4	12	89	6	64	20	10	7	62	1.50
5781384--5781440	23	2.5	23	85	0	60	17	8	12	61	1.55
5783727--5783921	102	1.9	102	91	0	318	42	21	15	21	1.89
5786390--5786435	11	4.2	11	86	5	58	89	6	4	0	0.60
5786390--5786420	16	1.9	16	100	0	62	90	9	0	0	0.46
5786389--5786438	12	4.3	11	82	7	55	86	6	8	0	0.72
5787923--5788785	433	2.0	435	91	0	1399	31	14	13	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5794393--5794418	11	2.4	11	100	0	52	30	0	15	53	1.42
5800263--5800313	21	2.4	21	76	3	57	29	17	17	35	1.93
5801866--5801953	23	3.8	23	93	0	149	21	27	23	27	1.99
5804481--5804527	19	2.5	19	96	0	85	38	6	21	34	1.79
5805499--5805539	21	2.0	21	95	0	73	26	19	19	34	1.96
5807107--5807167	23	2.7	23	94	0	113	16	27	27	27	1.97
5809413--5809451	13	3.0	13	88	0	60	66	12	5	15	1.41
5814844--5814870	10	2.7	10	100	0	54	66	0	0	33	0.92
5822285--5822335	21	2.4	21	96	0	93	27	25	21	25	1.99
5824180--5824216	19	1.9	19	94	0	65	45	0	16	37	1.47
5825011--5825048	20	1.9	20	88	0	58	39	13	10	36	1.79
5825364--5825420	21	2.9	20	87	7	82	28	14	10	47	1.76
5825718--5825748	16	1.9	16	93	0	53	32	22	19	25	1.97
5825733--5825772	20	2.0	20	85	9	55	30	27	12	30	1.93
5827256--5827399	65	2.2	64	84	6	184	34	17	20	27	1.95
5827356--5827395	18	2.3	18	86	4	55	32	17	25	25	1.97
5827709--5827749	21	2.0	21	95	0	73	26	31	0	41	1.56
5827952--5828005	27	2.0	27	81	0	63	57	12	3	25	1.52
5829926--5830024	21	4.5	22	75	9	94	25	21	24	29	1.99
5829930--5830015	24	3.8	23	77	11	97	26	23	23	26	2.00
5829926--5830024	45	2.2	44	87	10	148	25	21	24	29	1.99
5841469--5841502	6	5.7	6	96	0	59	0	20	44	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5847135--5847193	29	2.0	29	96	0	109	47	13	15	23	1.81
5854022--5854269	130	1.9	130	93	0	424	35	14	13	36	1.85
5854036--5854300	130	2.0	129	81	4	309	38	12	13	34	1.83
5854595--5854654	26	2.3	26	82	8	68	46	1	1	50	1.21
5854732--5854765	16	2.0	18	88	11	54	64	5	2	26	1.30
5854888--5854930	21	2.0	21	100	0	86	39	0	13	46	1.44
5854899--5854984	35	2.5	35	82	3	93	38	1	19	40	1.60
5855115--5855172	29	2.0	29	86	6	82	27	8	29	34	1.87
5855663--5855830	83	2.0	86	90	4	272	44	11	11	32	1.76
5855951--5856341	199	2.0	199	91	2	633	32	16	14	36	1.89
5857848--5857882	18	1.9	18	88	0	52	51	11	5	31	1.61
5857848--5857901	24	2.2	24	83	6	74	50	12	5	31	1.64
5860751--5861796	200	5.2	198	86	2	1333	31	15	14	38	1.87
5868327--5868624	86	3.5	85	87	4	395	30	15	23	31	1.95
5868329--5868624	43	6.9	43	83	2	346	30	14	23	31	1.95
5868320--5868710	86	4.6	87	81	6	365	27	16	22	33	1.95
5869122--5869173	21	2.3	21	80	9	59	0	34	19	46	1.50
5871705--5872071	42	8.8	42	82	5	383	34	18	19	27	1.95
5871705--5872071	83	4.4	84	82	7	412	34	18	19	27	1.95
5871705--5872071	125	3.0	124	87	2	495	34	18	19	27	1.95
5871701--5872134	42	10.4	43	78	11	311	34	19	18	26	1.95
5872617--5872781	41	4.0	41	80	8	131	33	17	14	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5872637--5872798	41	3.9	42	81	9	165	34	16	14	33	1.90
5872639--5872842	82	2.5	82	81	10	222	32	15	16	35	1.90
5872686--5872998	42	7.5	41	74	14	144	28	18	17	35	1.94
5872811--5872964	82	1.9	83	91	4	258	24	20	18	36	1.95
5872811--5872998	82	2.3	83	87	6	256	25	20	18	35	1.95
5872888--5873024	42	3.3	42	74	10	111	29	22	16	31	1.95
5873284--5873393	42	2.6	42	81	1	123	37	16	13	32	1.88
5876843--5876914	23	3.1	23	91	0	90	22	19	25	33	1.97
5881461--5881558	23	4.2	23	77	3	74	18	21	25	34	1.96
5881506--5881571	24	2.8	24	88	2	89	19	22	22	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43