genome.fa.s8094.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008094.1 Hibiscus syriacus cultivar Beakdansim tig00110610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9952466

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  41  of  43  ( 5090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9013604--9013650	15	3.1	15	100	0	94	19	25	0	55	1.43
9014551--9014583	6	5.7	6	89	3	50	57	0	30	12	1.35
9014761--9014847	36	2.4	36	92	1	140	28	3	37	29	1.74
9015290--9015318	2	14.5	2	100	0	58	51	0	0	48	1.00
9015253--9015298	23	2.0	23	83	8	58	36	6	8	47	1.60
9016926--9016994	13	5.5	12	78	13	68	75	2	20	1	1.01
9016928--9016983	29	1.9	29	86	13	80	75	3	19	1	1.05
9016957--9016981	8	3.1	8	100	0	50	76	0	24	0	0.80
9016921--9016986	21	3.3	20	70	22	59	75	3	19	1	1.01
9016920--9016991	16	4.7	15	70	14	58	76	2	19	1	0.99
9019855--9019899	23	2.0	22	82	4	54	35	6	8	48	1.61
9021499--9021568	13	5.5	12	79	16	70	75	2	20	1	1.00
9021497--9021560	21	3.0	23	80	19	68	75	3	20	1	1.03
9021493--9021569	30	2.6	29	76	17	79	75	2	20	1	1.00
9021494--9021555	8	7.9	8	75	15	58	75	3	19	1	1.02
9036971--9037015	23	2.0	23	91	4	74	40	6	6	46	1.56
9038773--9038814	20	2.1	20	100	0	84	23	14	14	47	1.80
9041601--9041645	23	2.0	22	91	4	72	40	4	6	48	1.49
9046908--9047012	35	3.0	35	85	1	138	27	35	3	33	1.75
9048284--9048393	34	3.1	35	86	3	150	32	3	35	28	1.75
9061453--9061490	18	2.1	18	100	0	76	28	10	21	39	1.86
9063756--9063796	20	2.0	20	90	9	66	19	14	0	65	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9063752--9063799	19	2.5	19	84	15	64	18	14	0	66	1.25
9069281--9069328	24	2.0	24	87	4	69	20	20	25	33	1.97
9072518--9072575	13	4.7	13	72	12	50	29	39	0	31	1.57
9072511--9072622	35	3.2	35	85	2	154	30	36	1	31	1.68
9073364--9073414	19	2.6	20	90	3	77	43	5	15	35	1.71
9076402--9076456	19	2.8	20	78	10	69	61	3	16	18	1.48
9078267--9078352	11	7.2	12	72	22	58	27	3	38	30	1.73
9078249--9078353	36	2.9	36	94	1	176	27	4	37	30	1.77
9082253--9082296	17	2.5	19	82	10	58	0	20	4	75	0.98
9082682--9082767	13	7.2	12	72	22	58	29	3	37	30	1.74
9082664--9082768	36	2.9	36	95	1	185	28	4	36	30	1.78
9089039--9089086	19	2.5	20	82	3	62	43	6	12	37	1.68
9094553--9094637	11	7.2	11	72	22	66	31	36	3	28	1.74
9094550--9094654	36	2.9	36	95	1	185	30	36	4	28	1.78
9104199--9104228	13	2.4	13	94	5	53	43	0	30	26	1.55
9109707--9109811	36	2.9	36	92	1	176	31	35	4	28	1.78
9125743--9125823	35	2.2	37	91	4	130	28	3	37	30	1.75
9126683--9126725	20	2.2	20	91	4	70	37	9	4	48	1.56
9127240--9127287	15	3.1	14	75	18	51	16	22	0	60	1.36
9127241--9127302	33	1.9	32	83	9	81	20	20	0	58	1.40
9132079--9132304	81	2.8	81	90	0	353	36	11	22	30	1.88
9136092--9136205	59	1.9	59	87	0	165	37	22	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9142320--9142346	3	9.0	3	100	0	54	0	0	33	66	0.92
9145825--9146006	90	2.0	91	87	3	260	21	26	23	28	1.99
9158757--9158785	11	2.6	11	100	0	58	75	17	6	0	1.01
9158750--9158792	20	2.2	20	87	8	61	76	16	6	0	0.99
9166074--9166157	11	7.2	11	71	20	64	33	34	3	28	1.75
9166071--9166166	35	2.7	36	90	4	160	31	34	5	29	1.79
9166607--9166653	14	3.1	15	75	12	51	72	6	19	2	1.17
9175702--9175757	13	4.7	11	74	21	51	0	17	1	80	0.80
9175702--9175758	19	3.1	18	81	18	73	0	17	1	80	0.79
9178972--9179055	11	7.2	11	71	20	64	33	34	3	28	1.75
9178969--9179064	35	2.7	36	90	4	160	31	34	5	29	1.79
9186621--9186679	24	2.3	26	77	8	68	8	18	11	61	1.55
9186672--9186710	17	2.2	18	86	13	55	7	10	10	71	1.30
9187782--9187861	30	2.7	30	82	3	99	26	27	18	27	1.98
9192154--9192335	90	2.0	91	86	1	258	28	22	27	21	1.99
9201372--9201401	2	15.5	2	93	6	53	50	0	0	50	1.00
9204300--9204381	17	4.8	17	71	18	62	6	15	3	74	1.16
9204317--9204378	29	2.2	28	83	13	74	1	17	1	79	0.90
9204317--9204377	21	3.0	21	77	15	65	1	18	1	78	0.91
9222114--9222172	25	2.4	25	82	2	66	8	13	15	62	1.53
9223814--9223866	16	3.3	17	80	15	51	43	9	11	35	1.73
9230065--9230132	30	2.3	29	80	12	75	4	17	2	75	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9230080--9230137	22	2.6	22	73	10	55	1	17	1	79	0.90
9235101--9235141	14	3.0	14	89	3	57	21	41	0	36	1.54
9235104--9235143	13	3.0	13	88	3	53	22	42	0	35	1.54
9237320--9237359	22	1.9	22	90	10	66	45	10	20	25	1.81
9242861--9243033	90	1.9	91	85	1	240	22	26	23	28	1.99
9247267--9247439	90	1.9	91	89	3	269	24	26	21	28	1.99
9250105--9250201	32	3.0	32	98	0	185	35	10	6	48	1.62
9253559--9253590	13	2.5	13	95	5	57	25	31	0	43	1.55
9257188--9257367	90	2.0	91	86	1	254	27	21	27	23	1.99
9264024--9264095	17	4.2	17	83	5	83	37	13	8	40	1.75
9264649--9264690	16	2.4	18	84	7	61	69	0	14	16	1.20
9265999--9266053	2	27.5	2	85	7	76	49	1	3	45	1.30
9270554--9270614	32	1.9	33	84	15	85	57	0	24	18	1.40
9270781--9270849	13	5.5	13	71	10	54	27	2	42	27	1.70
9274526--9274568	23	1.9	23	90	4	70	0	13	2	83	0.74
9274524--9274575	18	3.1	17	81	10	61	0	15	1	82	0.75
9274528--9274575	24	2.0	25	91	4	80	0	14	2	83	0.74
9274767--9274827	32	1.9	33	84	15	85	57	0	26	16	1.39
9279154--9279319	90	1.8	91	88	1	253	22	24	22	30	1.99
9280083--9280115	16	2.1	16	88	11	50	81	12	6	0	0.85
9284495--9284537	15	2.7	16	86	10	61	16	30	0	53	1.43
9284729--9284772	12	3.6	11	82	17	52	77	4	18	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9284794--9284840	14	3.1	15	75	12	51	72	6	19	2	1.17
9301193--9301238	23	2.0	23	83	8	58	39	6	6	47	1.55
9302874--9302911	13	2.9	13	92	0	58	78	0	21	0	0.74
9305797--9305842	23	2.0	23	83	8	58	36	8	8	45	1.66
9310382--9310427	23	2.0	23	83	8	58	36	8	8	45	1.66
9312230--9312284	18	2.9	19	86	8	76	38	12	7	41	1.71
9321557--9321599	23	1.9	21	81	13	50	32	18	13	34	1.90
9329504--9329568	10	6.5	10	91	7	96	0	4	9	86	0.71
9329497--9329546	17	2.7	19	81	12	59	0	4	12	84	0.76
9329504--9329568	19	3.3	19	89	6	94	0	4	9	86	0.71
9329739--9329773	17	2.1	17	100	0	70	42	11	22	22	1.85
9332088--9332198	35	3.2	35	84	2	143	27	36	3	32	1.74
9332823--9332880	16	3.6	16	76	15	50	17	17	0	65	1.27
9336623--9336730	35	3.0	36	78	4	121	28	34	2	34	1.72
9336874--9336912	15	2.5	15	79	4	51	15	25	2	56	1.52
9339759--9340937	598	2.0	591	85	4	1622	33	17	15	32	1.92
9341224--9341405	90	2.0	91	88	1	267	21	27	23	28	1.99
9344933--9344962	13	2.4	13	94	5	53	43	0	30	26	1.55
9346819--9346989	90	1.9	91	87	1	254	23	26	21	28	1.99
9354321--9354348	12	2.3	12	100	0	56	35	35	7	21	1.81
9355695--9355719	10	2.5	10	100	0	50	84	8	0	8	0.79
9356562--9356601	21	1.9	21	90	10	64	47	5	27	20	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9357711--9357793	34	2.4	34	80	11	107	28	14	13	43	1.83
9357892--9357963	17	4.2	17	82	3	90	41	6	13	37	1.72
9364689--9364748	23	2.6	23	83	2	75	10	16	11	61	1.55
9365523--9365704	90	2.0	91	86	1	258	28	22	28	21	1.99
9367173--9367277	36	2.9	36	91	1	158	31	35	2	30	1.72
9367176--9367260	11	7.2	11	73	22	66	32	35	1	30	1.66
9370427--9370477	20	2.6	20	87	3	68	35	13	7	43	1.73
9371206--9371263	29	2.0	29	83	10	73	75	3	15	5	1.11
9375959--9376003	18	2.5	18	85	0	54	28	22	17	31	1.97
9376597--9376629	16	2.1	16	94	0	57	45	0	21	33	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43