genome.fa.s8094.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008094.1 Hibiscus syriacus cultivar Beakdansim tig00110610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9952466

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  2  of  43  ( 5090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172194--172243	24	2.1	24	82	17	61	54	2	0	44	1.11
172692--172793	2	51.0	2	75	11	93	50	1	3	44	1.32
176759--176805	18	2.5	20	77	16	57	65	0	0	34	0.93
182126--182185	23	2.6	23	89	0	93	28	28	25	18	1.98
183801--183832	13	2.4	14	85	15	50	25	0	0	75	0.81
187006--187062	20	2.8	20	86	7	71	26	21	21	31	1.98
204780--204845	2	33.5	2	96	3	125	50	0	0	50	1.00
205651--205733	43	1.9	43	95	0	148	27	18	22	31	1.97
207044--207117	21	3.6	21	75	3	87	33	27	17	21	1.96
207034--207096	20	3.1	20	72	4	72	39	22	22	15	1.92
207034--207121	41	2.1	41	97	0	167	37	22	19	20	1.94
209571--209634	28	2.3	28	88	0	92	26	21	20	31	1.98
210544--210577	17	2.0	17	100	0	68	11	35	23	29	1.90
211936--212066	42	3.1	42	91	4	201	35	16	16	31	1.91
211936--212129	42	4.7	41	82	6	187	39	17	15	27	1.90
212251--212386	41	3.3	41	73	8	123	34	16	17	30	1.93
212369--212462	42	2.2	42	80	0	116	36	17	14	31	1.90
212497--212522	12	2.2	12	100	0	52	38	7	15	38	1.76
213209--213274	14	5.1	13	75	18	66	62	1	0	36	1.05
213203--213283	38	2.1	38	95	0	144	65	1	0	33	1.01
214281--214309	14	2.0	15	93	6	51	58	0	0	41	0.98
215294--215322	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227582--227664	29	2.8	29	96	1	148	44	13	12	30	1.80
229655--229698	20	2.2	20	100	0	88	56	11	22	9	1.62
231333--231367	17	2.1	17	100	0	70	37	28	11	22	1.89
234322--234401	39	2.1	39	82	13	96	48	3	1	46	1.28
240012--240038	12	2.2	12	100	0	54	85	14	0	0	0.61
240012--240051	17	2.4	17	84	12	55	82	15	0	2	0.77
240311--240364	23	2.4	23	90	3	83	12	16	18	51	1.75
243356--243407	21	2.5	22	81	9	63	65	0	0	34	0.93
243302--243653	99	3.5	98	72	14	351	58	2	2	36	1.25
243557--243657	21	4.9	21	68	19	68	63	1	0	33	1.12
243212--243634	201	2.0	212	90	9	681	56	2	2	38	1.27
243641--243714	38	2.0	37	84	7	96	51	0	13	35	1.41
243724--243767	17	2.5	19	79	17	51	75	2	2	20	1.03
254763--254789	2	13.5	2	100	0	54	48	0	0	51	1.00
254729--254781	29	1.9	26	85	11	70	43	0	0	56	0.99
257937--258037	21	4.9	21	76	15	86	23	14	28	32	1.95
257960--258046	21	4.2	20	75	7	68	20	16	29	33	1.94
257960--258046	41	2.1	41	82	4	104	20	16	29	33	1.94
257683--258379	367	1.9	367	94	1	1238	30	16	18	33	1.94
258398--258463	20	3.2	20	80	4	78	19	16	30	33	1.94
258396--258452	21	2.8	20	86	2	78	22	17	26	33	1.96
258396--258473	41	1.9	41	86	0	111	21	15	28	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259338--259482	43	3.4	43	87	0	200	35	17	15	31	1.91
263249--263306	3	19.3	3	85	7	82	37	0	0	62	0.96
263245--263314	12	6.0	11	87	9	79	38	0	0	61	0.96
263241--263303	9	7.5	8	80	19	67	36	0	0	63	0.95
264471--264517	20	2.3	21	75	17	55	21	2	8	68	1.27
264531--264585	23	2.3	24	84	3	67	47	0	3	49	1.19
265235--265294	30	2.0	30	83	0	75	31	6	1	60	1.33
266963--267005	14	3.1	14	82	0	59	27	16	2	53	1.55
269908--269936	2	14.5	2	100	0	58	48	0	0	51	1.00
270227--270269	17	2.5	16	85	11	50	83	0	16	0	0.64
270235--270263	10	2.7	11	89	10	51	89	0	10	0	0.48
272519--272858	114	3.0	114	91	0	538	33	14	20	31	1.93
275290--275344	22	2.5	22	84	0	74	36	12	14	36	1.84
275730--276389	113	5.8	113	89	2	965	38	15	18	28	1.90
276335--276424	36	2.5	36	92	0	144	51	10	20	18	1.75
276669--276738	3	23.3	3	91	5	115	35	0	0	64	0.94
277955--278009	23	2.3	24	84	3	67	47	0	3	49	1.19
281061--281097	2	18.5	2	100	0	74	51	0	0	48	1.00
294988--295105	30	4.0	29	69	17	82	52	5	1	39	1.36
296367--296416	3	16.3	3	95	4	91	32	2	0	66	1.03
298947--299017	3	23.7	3	94	0	124	33	2	0	63	1.09
300458--300504	14	3.5	13	80	13	51	40	2	2	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301158--301200	19	2.3	19	84	11	54	30	4	0	65	1.13
301173--301223	21	2.3	23	80	12	63	27	3	0	68	1.07
301173--301238	21	3.2	20	74	19	57	28	4	1	65	1.21
307572--307641	21	3.5	21	70	18	76	18	22	18	40	1.92
307570--307651	39	2.1	39	100	0	164	20	20	18	40	1.92
311823--311859	10	3.6	10	96	3	65	89	0	10	0	0.49
311819--311867	7	7.4	7	82	17	61	85	0	14	0	0.59
311822--311866	13	3.2	15	81	15	60	88	0	11	0	0.50
311812--311867	25	2.3	24	87	3	76	83	0	14	1	0.72
311824--311857	5	6.8	5	86	0	50	88	0	11	0	0.52
312999--313227	82	2.8	83	94	2	408	27	13	21	37	1.91
313953--314737	114	6.9	115	90	3	1010	37	12	20	30	1.89
313953--314737	229	3.4	224	85	7	999	37	12	20	30	1.89
315054--315109	3	18.7	3	92	0	94	33	1	1	62	1.16
316551--316597	14	3.5	13	80	13	51	40	2	2	55	1.24
330078--330102	12	2.1	12	100	0	50	8	44	0	48	1.32
336071--336216	64	2.3	64	86	4	206	28	19	18	32	1.96
342622--342656	2	17.5	2	100	0	70	48	0	0	51	1.00
344123--344161	2	19.5	2	100	0	78	51	0	0	48	1.00
350900--351007	51	2.2	51	81	3	130	29	14	9	46	1.76
355971--356088	60	2.0	60	86	0	164	45	4	19	30	1.69
362443--362486	21	2.2	20	83	4	52	29	13	20	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372688--372966	102	2.7	101	85	2	353	15	18	22	44	1.87
376345--377164	410	2.0	402	94	5	1434	42	19	13	24	1.87
381097--381423	176	1.9	176	88	5	500	29	14	24	32	1.94
381984--382018	17	2.0	18	88	5	54	5	14	11	68	1.37
391614--391652	17	2.2	18	86	4	53	46	2	2	48	1.29
391692--391724	17	1.9	17	93	0	57	66	0	0	33	0.92
391743--391779	17	2.2	17	86	13	51	37	8	0	54	1.30
392331--392407	31	2.5	32	87	6	122	29	6	11	51	1.63
392547--392610	29	2.2	29	77	5	67	62	0	3	34	1.11
392549--392627	23	3.2	24	75	12	72	55	0	3	40	1.18
392567--392638	22	3.0	25	72	17	71	54	0	4	41	1.20
392925--393017	37	2.5	38	86	10	131	32	15	17	35	1.91
393869--393907	8	4.9	8	100	0	78	51	12	12	23	1.74
400435--400499	30	2.2	29	86	8	87	43	18	38	0	1.50
400464--400529	21	3.2	21	84	2	80	42	18	39	0	1.50
400966--401089	43	2.9	44	83	6	155	27	24	17	30	1.97
400864--401045	86	2.1	87	78	12	189	29	21	21	27	1.98
400908--401105	43	4.7	43	72	19	128	28	22	20	28	1.98
401153--401190	15	2.8	13	88	11	51	10	21	31	36	1.87
403391--403430	18	2.3	18	91	4	64	22	7	32	37	1.82
403396--403476	14	5.5	14	72	21	67	24	3	32	39	1.73
403400--403459	18	3.2	18	77	9	66	23	5	33	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412033--412080	21	2.3	21	85	0	60	31	8	43	16	1.78
429391--429427	2	18.5	2	100	0	74	48	0	0	51	1.00
439692--439721	4	7.5	4	92	0	51	23	3	23	50	1.64
442362--442392	13	2.4	13	100	0	62	6	19	0	74	1.03
445895--445924	2	15.0	2	100	0	60	50	0	0	50	1.00
446811--446862	21	2.5	21	78	12	61	36	21	19	23	1.95
454503--454603	20	4.9	20	84	6	130	19	33	28	17	1.95
454951--455020	34	2.1	32	84	5	86	34	14	27	24	1.94
457355--457458	20	5.0	21	82	5	131	19	34	28	17	1.94
457354--457458	41	2.5	41	87	6	158	19	35	28	17	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43