genome.fa.s8926.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008926.1 Hibiscus syriacus cultivar Beakdansim tig00112231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4069050

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  15  of  20  ( 2371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2904429--2904769	30	11.7	29	75	11	216	53	1	8	36	1.39
2904493--2904558	25	2.6	25	82	2	69	56	0	7	36	1.28
2904630--2904774	59	2.5	59	82	4	170	52	1	8	37	1.42
2905747--2905791	18	2.5	18	100	0	90	44	28	4	22	1.72
2906276--2906329	28	1.9	28	82	14	67	61	3	5	29	1.36
2908396--2908689	30	9.8	30	73	9	172	51	0	8	39	1.37
2908527--2908679	59	2.6	57	78	14	161	50	0	8	40	1.38
2912195--2912245	16	3.1	16	83	10	66	45	0	3	50	1.20
2912199--2912224	2	13.0	2	100	0	52	50	0	0	50	1.00
2913043--2913067	2	12.5	2	100	0	50	48	0	0	52	1.00
2913778--2913813	2	18.0	2	100	0	72	50	0	0	50	1.00
2914376--2914437	29	2.1	29	96	0	115	17	3	11	67	1.34
2917529--2917582	3	18.0	3	81	7	65	59	3	1	35	1.26
2918054--2918618	240	2.3	240	94	0	970	26	20	16	36	1.94
2918405--2918751	136	2.6	134	86	5	454	25	21	17	35	1.95
2919617--2919662	22	2.1	22	88	8	67	6	13	0	80	0.89
2919628--2919682	10	5.2	10	80	10	65	7	12	0	80	0.91
2919628--2919673	22	2.1	22	88	8	67	6	10	0	82	0.83
2933218--2933266	24	2.0	24	100	0	98	12	46	8	32	1.71
2933867--2933928	18	3.6	17	74	21	51	40	0	4	54	1.22
2933874--2933977	38	2.6	40	73	14	97	36	0	3	59	1.16
2934271--2934303	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2935416--2935459	22	2.0	22	100	0	88	50	9	18	22	1.75
2938639--2938704	24	2.8	24	85	0	78	28	13	15	42	1.85
2939438--2939498	2	30.5	2	100	0	122	49	0	0	50	1.00
2955047--2955086	21	1.9	21	85	10	55	35	10	2	52	1.48
2957883--2957924	21	2.0	20	86	4	57	52	7	4	35	1.50
2958407--2958462	26	2.2	25	87	3	76	32	28	16	23	1.96
2975861--2975910	20	2.4	21	81	18	61	50	10	4	36	1.55
2976401--2976451	26	2.0	26	88	0	75	39	29	13	17	1.88
2978493--2978579	29	2.9	32	78	11	87	33	14	8	43	1.75
2978789--2978864	30	2.5	30	89	4	109	53	1	3	40	1.27
2978849--2978931	31	2.7	31	80	9	98	54	1	8	36	1.39
2978905--2979007	27	3.9	27	73	10	95	49	2	9	37	1.51
2978941--2979020	25	3.1	26	82	7	92	51	5	10	33	1.57
2982348--2982416	33	2.2	31	84	10	86	53	4	8	33	1.51
2982440--2982471	16	2.1	15	94	5	55	46	0	6	46	1.27
2983285--2983336	26	2.0	26	85	7	70	51	0	3	44	1.19
2983240--2983544	30	10.3	30	73	9	200	51	2	8	38	1.44
2983528--2983560	16	2.1	16	100	0	66	54	0	6	39	1.25
2983544--2983627	30	2.8	29	84	10	98	50	2	7	40	1.43
2984427--2984464	19	2.0	19	100	0	76	31	0	31	36	1.58
2984751--2984824	31	2.4	31	82	8	80	33	2	1	62	1.18
2986598--2986628	16	1.9	16	100	0	62	16	32	0	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2989510--2989711	95	2.1	94	89	0	314	32	16	24	25	1.96
2990114--2990356	79	3.1	79	89	3	339	37	11	23	27	1.89
2990202--2990345	45	3.5	43	74	20	144	34	10	26	28	1.89
2990247--2990311	34	1.9	34	90	0	103	35	9	26	29	1.87
2992359--2992395	2	18.5	2	94	0	65	45	0	51	2	1.15
2993485--2993509	4	6.2	4	100	0	50	76	0	0	24	0.80
2994057--2994121	23	2.8	22	79	9	76	23	6	12	58	1.56
2994030--2994121	46	2.0	46	83	10	116	22	5	11	59	1.52
2997557--2997596	21	1.9	21	90	10	64	52	0	10	37	1.35
2997901--2997952	25	2.1	25	100	0	104	32	7	28	30	1.85
3001389--3001448	23	2.9	20	85	9	68	23	30	26	20	1.98
3001431--3001470	21	1.9	21	89	0	62	25	40	25	10	1.86
3007905--3007941	3	12.3	3	100	0	74	67	0	0	32	0.91
3010825--3010932	3	36.3	3	98	1	209	66	0	0	33	0.92
3011157--3011209	23	2.3	23	93	0	88	37	22	22	16	1.94
3016320--3016358	19	2.1	19	95	0	69	20	51	0	28	1.48
3020807--3021040	51	4.7	52	78	6	225	23	10	14	51	1.73
3022627--3022724	2	49.0	2	100	0	196	50	0	0	50	1.00
3022956--3022992	10	3.8	10	92	7	67	70	0	0	29	0.88
3022960--3022991	9	3.4	9	95	4	55	71	0	0	28	0.86
3023358--3023398	20	2.0	20	86	9	57	21	0	34	43	1.53
3023354--3023390	14	2.8	13	87	4	56	18	0	35	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3026610--3026682	36	2.0	36	100	0	146	30	8	13	47	1.72
3032350--3032469	43	2.8	44	84	2	143	37	12	21	28	1.90
3033402--3033482	35	2.3	35	97	0	153	30	14	16	38	1.89
3033708--3034287	56	9.7	56	72	15	419	28	20	17	33	1.95
3033646--3034287	123	5.3	123	85	3	884	28	20	17	33	1.96
3033809--3034284	29	15.9	29	65	14	128	28	20	18	32	1.96
3033646--3034287	241	2.6	239	85	4	820	28	20	17	33	1.96
3034114--3034240	67	1.9	67	83	3	166	29	23	15	31	1.96
3034253--3034447	45	4.3	45	78	5	225	22	17	17	42	1.89
3034253--3034467	90	2.4	90	83	4	256	23	16	18	40	1.90
3034253--3034514	90	2.8	89	81	8	249	25	17	18	39	1.92
3035022--3035220	55	3.6	55	86	2	258	31	20	16	32	1.94
3035211--3035443	82	2.8	81	88	1	331	38	21	19	20	1.93
3035211--3035473	82	3.2	81	84	5	325	37	21	20	20	1.95
3041986--3042022	14	2.6	14	100	0	74	27	29	21	21	1.99
3042241--3042266	6	4.3	6	100	0	52	0	15	0	84	0.62
3043823--3043851	14	2.1	14	100	0	58	20	55	24	0	1.44
3057116--3057156	20	1.9	23	85	14	61	21	31	0	46	1.52
3057324--3057365	20	2.1	20	95	0	75	19	52	4	23	1.65
3081384--3081435	21	2.5	21	87	6	70	26	0	3	69	1.06
3082059--3082139	28	2.9	28	92	5	130	32	17	16	34	1.92
3083402--3083484	24	3.5	24	88	0	121	20	32	28	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3086330--3086476	76	1.9	76	85	0	204	44	6	14	34	1.72
3086738--3087010	146	1.9	145	87	5	408	42	9	13	34	1.77
3086864--3087240	157	2.4	158	81	2	463	42	11	12	33	1.79
3087323--3087560	72	3.3	71	71	8	180	42	7	15	34	1.75
3093578--3093627	24	2.1	24	100	0	100	38	26	8	28	1.84
3095165--3095218	26	2.1	26	86	6	74	48	7	3	40	1.49
3096691--3097297	41	13.6	47	79	11	654	31	18	22	27	1.97
3096691--3097293	180	3.4	176	88	6	864	31	18	22	28	1.97
3096691--3097293	266	2.3	267	93	4	1033	31	18	22	28	1.97
3098394--3098450	27	2.0	28	83	6	71	8	15	1	73	1.16
3098900--3099522	312	2.0	310	97	1	1185	24	21	18	34	1.96
3109859--3109911	26	2.0	27	86	13	76	49	7	3	39	1.49
3111413--3111442	3	9.7	3	92	7	51	63	0	0	36	0.95
3112093--3112147	24	2.4	24	85	11	71	16	9	3	70	1.27
3116439--3116568	32	4.1	32	78	2	136	19	15	29	36	1.92
3116560--3116687	46	2.8	46	82	4	150	16	14	28	41	1.87
3116762--3116801	19	2.1	19	95	0	71	50	10	7	32	1.64
3116948--3116974	12	2.2	12	100	0	54	25	0	22	51	1.48
3121455--3121483	2	14.5	2	100	0	58	48	0	0	51	1.00
3121742--3121784	22	2.0	21	86	4	59	39	9	13	37	1.78
3133569--3133657	45	1.9	47	90	4	146	29	10	23	37	1.88
3141427--3141577	64	2.3	63	81	7	178	34	19	17	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3142232--3142340	31	3.5	31	78	3	96	24	18	22	34	1.96
3142285--3142360	30	2.5	30	84	2	98	18	19	27	34	1.95
3142312--3142383	29	2.4	30	86	2	92	16	20	31	30	1.95
3145599--3145749	64	2.3	63	85	6	187	34	19	17	28	1.95
3146404--3146512	31	3.5	31	78	3	96	24	18	22	34	1.96
3146457--3146532	30	2.5	30	84	2	98	18	19	27	34	1.95
3146484--3146555	29	2.4	30	86	2	92	16	20	31	30	1.95
3149772--3149922	64	2.3	63	85	6	187	34	19	17	28	1.95
3150577--3150685	31	3.5	31	78	3	96	24	18	22	34	1.96
3150630--3150705	30	2.5	30	84	2	98	18	19	27	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20