genome.fa.s8926.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008926.1 Hibiscus syriacus cultivar Beakdansim tig00112231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4069050

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  5  of  20  ( 2371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927064--927099	18	2.0	18	94	0	63	30	33	19	16	1.94
928033--928238	101	2.0	102	99	0	405	25	19	16	37	1.93
928589--928643	10	5.3	10	76	23	60	36	12	9	41	1.75
928588--928643	21	2.7	21	100	0	112	35	12	8	42	1.74
928599--928637	11	3.6	11	80	19	55	30	15	10	43	1.80
928835--928861	7	3.9	7	100	0	54	0	55	0	44	0.99
929101--929153	24	2.4	24	78	15	60	28	28	1	41	1.67
931595--931630	18	2.0	18	94	0	63	30	33	13	22	1.93
932761--932831	20	3.5	20	92	0	115	23	23	30	21	1.99
935549--935609	24	2.7	23	87	7	81	18	24	36	21	1.95
942523--942596	3	24.3	3	90	2	94	36	5	0	58	1.21
943507--943537	2	15.5	2	100	0	62	51	0	0	48	1.00
944047--944139	30	3.1	30	72	7	89	13	6	13	65	1.45
944022--944139	60	2.0	61	82	1	148	14	8	13	63	1.51
948249--948298	27	1.9	25	84	8	64	16	16	10	58	1.63
949243--949276	15	2.3	15	94	0	59	17	38	14	29	1.90
953692--953730	18	2.2	18	90	9	62	28	5	20	46	1.72
956118--956162	21	2.1	21	84	8	56	71	6	17	4	1.25
957455--957764	126	2.5	127	94	1	525	29	26	20	23	1.99
957791--957926	47	2.9	47	88	0	200	33	22	16	27	1.95
958209--958289	3	26.7	3	91	2	126	37	1	0	61	1.04
961757--961796	21	1.9	21	89	0	62	35	10	5	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
962018--962096	21	3.7	21	76	15	81	24	35	18	21	1.96
967292--967402	58	1.9	58	83	0	141	35	12	5	46	1.65
969043--969105	26	2.5	26	80	14	78	49	1	4	44	1.33
971141--971171	16	1.9	16	93	0	53	67	3	9	19	1.33
971347--971658	103	3.0	103	85	3	412	41	16	17	24	1.90
972972--973427	139	3.3	139	83	1	538	25	17	27	29	1.97
973674--973974	104	2.9	104	82	4	365	36	10	16	36	1.84
976220--976287	24	2.8	23	78	13	66	57	2	4	35	1.34
977154--977221	12	5.6	12	72	10	57	1	20	1	76	0.94
977140--977250	42	2.5	43	80	12	102	0	19	2	76	0.96
977142--977249	7	16.0	7	75	11	57	0	19	1	77	0.91
977188--977242	12	4.6	12	80	6	58	0	14	3	81	0.82
977137--977244	19	5.5	19	75	15	87	0	18	1	78	0.89
977210--977250	18	2.3	19	87	8	59	0	14	4	80	0.87
977160--977261	48	2.1	49	83	1	125	2	17	3	75	1.08
981837--982047	114	1.8	116	82	9	272	48	14	13	23	1.79
981824--982079	114	2.2	114	76	16	258	52	12	11	23	1.71
987907--987933	13	2.1	13	100	0	54	33	7	7	51	1.58
991376--991418	21	2.0	22	90	4	70	25	34	23	16	1.95
992171--992256	24	3.7	24	73	4	86	33	23	23	19	1.97
992177--992256	23	3.4	23	75	3	88	33	23	23	18	1.97
992171--992264	23	4.0	23	72	9	73	32	23	23	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992378--992421	23	1.9	23	95	0	79	27	27	29	15	1.96
997360--997517	81	2.0	81	94	0	280	20	20	8	50	1.75
997511--997543	15	2.3	15	89	5	50	6	21	3	69	1.24
1001877--1001918	2	21.5	2	95	4	77	50	0	0	50	1.00
1001940--1002003	6	10.2	6	75	21	60	79	0	17	3	0.85
1001948--1001994	8	5.7	9	72	27	50	80	0	17	2	0.80
1001940--1002005	22	3.0	22	80	10	80	80	0	16	3	0.84
1001918--1001996	15	5.3	15	72	14	65	78	1	15	5	0.99
1002441--1002599	47	3.5	47	89	3	218	39	8	18	33	1.81
1003602--1003661	6	10.3	6	82	10	54	76	1	15	6	1.06
1003602--1003674	17	4.4	16	80	14	69	78	1	13	6	1.02
1003612--1003677	10	6.1	11	86	10	84	77	0	13	9	0.99
1003609--1003675	23	3.0	22	83	14	84	77	0	13	8	0.98
1003597--1003677	10	7.6	10	76	17	74	75	1	14	8	1.10
1007570--1007607	15	2.5	15	95	4	67	42	2	0	55	1.14
1008894--1008933	20	2.0	21	85	5	55	35	12	5	47	1.63
1014655--1015186	236	2.3	231	86	8	736	28	12	18	41	1.86
1015532--1015578	18	2.7	18	86	3	60	27	25	8	38	1.85
1021492--1021610	23	5.1	24	88	3	172	31	25	20	22	1.98
1025425--1025463	6	6.5	6	93	0	69	35	51	12	0	1.40
1032145--1032205	28	2.1	29	78	6	70	34	1	11	52	1.47
1035981--1036021	2	20.5	2	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1037885--1037918	17	2.1	16	88	5	50	14	8	0	76	1.01
1044271--1044314	20	2.2	20	80	4	54	18	15	0	65	1.27
1048149--1048182	17	2.1	16	88	5	50	14	8	0	76	1.01
1048523--1048794	135	2.0	135	96	0	499	43	15	9	32	1.78
1052443--1052483	14	2.7	15	85	14	50	68	0	2	29	1.03
1059553--1059592	20	2.1	19	85	4	53	52	0	0	47	1.00
1059669--1059706	20	1.9	20	94	0	67	50	2	7	39	1.46
1060626--1060680	11	5.4	10	75	12	58	40	1	1	56	1.21
1065863--1066017	83	1.9	83	86	4	224	36	12	13	37	1.82
1067956--1068005	24	2.1	24	88	0	73	44	20	14	22	1.86
1067966--1068048	12	6.8	13	64	20	54	34	22	18	24	1.96
1067966--1068053	24	3.7	24	86	6	115	34	21	19	25	1.96
1073074--1073108	3	11.7	3	87	0	52	60	0	2	37	1.12
1073074--1073112	12	3.2	12	88	0	60	58	0	5	35	1.20
1073388--1073998	250	2.4	252	88	1	881	33	16	15	34	1.91
1076267--1076310	18	2.5	18	96	3	81	22	11	25	40	1.87
1082630--1082676	3	15.7	3	90	0	76	61	0	4	34	1.15
1084387--1084454	24	2.9	24	80	6	77	45	0	2	51	1.16
1086006--1086049	22	2.0	21	82	4	52	38	2	9	50	1.47
1086348--1086446	43	2.3	43	98	1	189	30	12	23	34	1.91
1086459--1086686	76	3.0	75	96	2	411	37	4	23	34	1.76
1088259--1088305	18	2.7	18	90	3	69	38	6	25	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088835--1088925	38	2.4	38	87	3	139	39	39	9	10	1.74
1090198--1090235	20	1.9	20	100	0	76	23	28	10	36	1.88
1090582--1090613	16	2.0	16	100	0	64	43	18	0	37	1.51
1091197--1091239	21	2.0	21	90	0	68	23	13	9	53	1.69
1092765--1092835	18	3.9	18	98	0	133	56	0	0	43	0.99
1098592--1098668	32	2.4	32	91	0	118	35	19	9	36	1.84
1098624--1098746	32	3.9	31	79	1	120	30	20	11	38	1.88
1102398--1102814	139	3.0	136	81	9	467	40	15	15	29	1.87
1107644--1107931	144	2.0	144	100	0	576	39	24	14	21	1.91
1108216--1108260	16	2.8	16	89	0	63	42	6	17	33	1.76
1108311--1108358	23	2.1	23	88	0	69	37	8	16	37	1.79
1108983--1109438	182	2.5	181	92	1	716	27	14	12	44	1.82
1109311--1109773	112	4.1	112	93	2	768	25	14	14	46	1.82
1109311--1109773	226	2.1	224	93	2	786	25	14	14	46	1.82
1110090--1110121	2	16.0	2	93	0	55	46	3	0	50	1.17
1110430--1110638	103	2.0	103	98	1	400	33	9	9	48	1.67
1124126--1124207	42	2.0	42	85	0	110	34	14	20	30	1.93
1124135--1124222	42	2.1	42	82	4	106	35	14	19	30	1.92
1125962--1126022	21	2.9	22	83	11	58	45	19	32	1	1.60
1126006--1126063	21	2.8	21	91	0	98	43	20	32	3	1.69
1126006--1126078	21	3.5	20	85	7	92	41	21	31	5	1.76
1126403--1126518	44	2.7	44	82	1	144	32	23	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126552--1126713	87	1.9	87	82	0	207	37	23	15	23	1.93
1126566--1126713	43	3.4	43	80	5	163	36	22	14	25	1.93
1126643--1126724	43	1.9	43	82	0	101	34	25	14	25	1.94
1126523--1126723	87	2.3	86	76	0	195	34	21	15	27	1.94
1128376--1128476	29	3.3	28	69	18	67	30	4	3	60	1.36
1128448--1128717	133	2.0	133	99	0	531	31	11	16	40	1.83
1128943--1129021	2	41.5	2	87	9	121	48	1	0	50	1.08
1130973--1131012	2	20.0	2	100	0	80	50	0	0	50	1.00
1136804--1137412	54	11.3	54	86	2	758	32	16	17	33	1.92
1138660--1138755	17	5.8	17	74	18	87	79	0	16	4	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20