genome.fa.s8926.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008926.1 Hibiscus syriacus cultivar Beakdansim tig00112231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4069050

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  16  of  20  ( 2371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3150657--3150728	29	2.4	30	86	2	92	16	20	31	30	1.95
3153727--3153881	21	7.7	20	71	7	80	38	25	16	19	1.92
3153849--3153903	20	2.8	19	80	5	65	43	25	18	12	1.85
3153851--3154042	40	4.8	40	84	3	136	35	25	19	19	1.95
3153890--3154044	20	7.7	20	84	4	213	32	25	20	21	1.97
3153851--3154044	60	3.2	60	82	2	246	35	25	19	19	1.95
3154426--3154496	33	2.2	33	89	0	106	11	23	16	47	1.79
3154576--3154685	21	5.8	20	74	17	108	45	18	24	11	1.83
3154569--3154685	41	3.1	38	81	14	145	46	17	25	11	1.81
3154636--3154692	14	3.7	14	75	20	60	43	22	24	8	1.81
3154628--3154708	33	2.5	33	95	0	144	46	22	22	8	1.78
3154704--3154801	19	5.7	19	70	22	81	10	24	22	42	1.84
3154726--3154815	14	5.7	14	74	23	81	8	25	23	42	1.83
3154709--3154823	33	3.5	33	95	0	212	9	24	20	45	1.81
3155542--3155804	93	2.8	93	98	0	508	22	12	18	46	1.82
3155848--3155976	19	7.3	19	75	17	125	45	28	17	8	1.77
3155884--3155976	33	2.8	32	91	4	150	46	27	18	7	1.76
3155848--3155976	52	2.5	52	74	14	140	45	28	17	8	1.77
3155972--3156106	19	7.6	19	75	16	128	11	19	23	45	1.82
3155994--3156050	14	3.7	14	77	20	60	10	21	22	45	1.82
3155977--3156069	33	2.8	33	95	0	168	10	20	21	47	1.80
3157652--3157676	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3157851--3157897	24	2.0	24	87	8	69	38	21	14	25	1.92
3158580--3158809	20	11.5	20	86	1	246	19	17	25	37	1.94
3160484--3160525	13	3.3	13	86	6	68	16	21	45	16	1.86
3160504--3160557	18	3.0	18	94	0	99	16	16	48	18	1.82
3160488--3160524	12	2.9	13	88	8	58	18	18	45	16	1.85
3167703--3167743	13	3.2	13	82	6	57	19	19	43	17	1.88
3167674--3167711	7	5.4	7	100	0	76	26	28	31	13	1.93
3167723--3167776	18	3.0	18	86	0	81	18	14	46	20	1.84
3170475--3170785	51	5.9	52	84	8	298	30	15	23	30	1.95
3170491--3170781	104	2.7	102	81	11	295	30	15	23	30	1.95
3170488--3170816	55	6.1	55	78	13	181	30	16	22	31	1.95
3187344--3187372	14	2.0	15	93	6	51	34	0	6	58	1.25
3189199--3189333	30	4.5	30	95	0	243	21	22	37	18	1.95
3189313--3189354	21	2.0	21	90	0	66	21	26	26	26	1.99
3189283--3189381	51	2.0	50	87	2	144	24	24	31	20	1.98
3189746--3189784	15	2.6	15	100	0	78	28	15	41	15	1.87
3195447--3195508	27	2.3	27	94	0	106	41	27	11	19	1.85
3198110--3198154	23	2.0	23	95	0	81	17	6	17	57	1.60
3198457--3198624	79	2.1	79	98	0	327	33	23	16	26	1.95
3201279--3201333	16	3.5	15	82	7	58	58	16	7	18	1.60
3205692--3205748	18	3.2	18	65	30	50	22	33	29	14	1.93
3205693--3205777	34	2.5	35	90	1	127	20	35	25	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3205889--3205930	21	2.0	21	90	9	68	23	19	28	28	1.98
3207138--3207171	16	2.0	18	88	11	54	47	8	2	41	1.50
3207158--3207205	19	2.5	20	82	3	62	52	6	12	29	1.63
3208573--3208657	34	2.5	35	90	1	136	20	34	25	20	1.96
3209092--3209162	34	2.2	32	82	5	79	32	15	28	23	1.95
3213583--3213696	59	1.9	59	89	0	174	30	14	25	29	1.94
3213704--3214217	74	7.0	74	79	9	392	41	11	15	31	1.83
3213708--3214217	36	13.9	36	71	9	250	41	11	15	31	1.83
3213870--3214204	185	1.8	187	88	3	516	40	11	15	32	1.83
3214055--3214221	73	2.3	74	87	8	259	40	10	16	31	1.83
3214055--3214249	73	2.7	73	83	10	254	40	11	17	30	1.86
3215213--3215246	16	2.1	16	100	0	68	50	11	0	38	1.39
3215373--3215410	2	19.0	2	100	0	76	50	0	0	50	1.00
3216694--3216727	12	2.7	13	86	9	52	41	5	8	44	1.60
3218454--3218492	13	3.1	13	85	7	53	48	7	10	33	1.66
3218986--3219092	44	2.4	44	85	0	142	27	19	21	31	1.97
3226509--3226565	28	1.9	30	86	10	82	56	8	17	17	1.66
3227521--3227574	23	2.6	21	81	16	67	59	11	9	20	1.59
3227519--3227575	22	2.7	21	81	10	71	59	10	8	21	1.57
3231273--3231344	23	3.1	23	95	0	135	29	25	23	22	1.99
3231238--3231365	46	2.9	44	82	9	168	32	26	20	21	1.97
3237020--3237107	23	3.9	23	78	14	103	28	25	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3238588--3238683	48	2.0	48	100	0	192	35	18	22	22	1.96
3239214--3239239	2	13.0	2	100	0	52	50	0	0	50	1.00
3244350--3244387	3	12.3	3	88	5	58	31	2	2	63	1.22
3245059--3245100	23	1.9	21	85	9	57	33	2	9	54	1.46
3245068--3245105	17	2.2	18	85	4	51	31	2	13	52	1.54
3245605--3245636	2	16.0	2	93	0	55	53	0	0	46	1.00
3246196--3246235	20	2.0	20	85	5	53	37	27	12	22	1.90
3248203--3248268	20	3.2	20	80	4	78	37	28	12	21	1.89
3248213--3248270	21	2.8	20	84	2	80	39	24	12	24	1.89
3248319--3248365	21	2.2	21	84	0	58	31	27	14	25	1.95
3248329--3248386	21	2.8	21	91	0	89	34	24	20	20	1.97
3248378--3248423	21	2.2	21	88	7	67	19	30	15	34	1.93
3254322--3254361	21	1.9	21	89	0	62	37	22	15	25	1.93
3254395--3254450	22	2.6	23	72	11	55	30	21	14	33	1.93
3257286--3257315	5	6.0	5	96	0	51	23	20	0	56	1.42
3259933--3259989	25	2.3	25	93	3	98	26	15	47	10	1.78
3267608--3267646	20	2.0	20	90	5	62	33	0	28	38	1.57
3270658--3270869	42	5.0	41	92	3	343	32	24	24	19	1.98
3277745--3277992	42	5.9	41	85	5	309	31	24	24	19	1.98
3277745--3277992	84	2.9	84	88	4	349	31	24	24	19	1.98
3277745--3277995	126	2.0	128	85	6	341	32	23	24	19	1.98
3279037--3279081	23	2.0	23	86	8	65	11	17	48	22	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3279075--3279117	9	4.4	10	86	11	54	32	27	23	16	1.96
3279080--3279118	11	3.8	11	90	9	57	35	25	20	17	1.95
3284140--3284305	59	2.8	59	81	6	167	45	6	17	31	1.73
3284194--3284284	28	3.1	28	70	22	71	47	6	15	30	1.71
3287757--3287819	32	2.0	32	90	3	101	46	14	19	20	1.84
3289199--3289232	17	2.1	17	88	5	52	20	5	2	70	1.21
3292271--3292344	7	10.6	7	77	11	71	44	35	0	20	1.52
3292268--3292357	42	2.1	42	89	0	135	44	33	0	22	1.53
3298735--3298771	2	18.5	2	100	0	74	48	0	0	51	1.00
3299885--3299996	51	2.2	51	96	0	206	15	28	10	45	1.79
3301082--3301403	90	3.6	90	91	0	502	33	22	19	24	1.97
3301404--3301653	43	5.8	43	88	3	308	31	28	14	26	1.95
3301406--3301660	86	3.0	86	83	6	345	30	28	14	26	1.95
3301476--3301540	21	3.0	22	60	13	53	29	24	16	29	1.97
3301406--3301660	129	2.0	129	88	1	386	30	28	14	26	1.95
3301659--3301774	39	2.9	39	85	2	142	37	13	16	31	1.88
3301761--3301805	15	3.0	15	90	0	72	31	20	28	20	1.97
3301795--3301859	21	3.4	21	64	24	61	38	13	24	23	1.91
3301780--3301877	36	2.7	36	95	0	178	36	17	25	20	1.94
3301852--3301891	15	2.7	15	96	0	71	32	22	32	12	1.91
3301880--3302008	39	3.3	39	89	2	188	34	17	20	27	1.95
3301987--3302073	15	5.5	15	80	10	84	35	17	26	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3301987--3302107	49	2.5	49	91	0	188	34	16	26	22	1.95
3301987--3302104	15	7.3	15	71	14	65	34	16	26	22	1.95
3302097--3302161	21	3.4	21	68	24	70	36	12	26	24	1.91
3302048--3302172	36	3.5	36	90	2	191	34	15	24	25	1.94
3302191--3302311	34	3.6	34	87	0	161	35	9	22	32	1.87
3302426--3302561	32	4.2	32	79	5	139	35	23	11	30	1.89
3303573--3303620	11	3.8	13	84	10	64	6	12	2	79	1.01
3303573--3303642	14	5.4	13	72	13	63	7	12	2	77	1.09
3303573--3303665	27	3.6	26	72	15	77	6	13	2	77	1.06
3308658--3308684	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20