genome.fa.s8926.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008926.1 Hibiscus syriacus cultivar Beakdansim tig00112231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4069050

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  7  of  20  ( 2371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1289595--1290199	213	2.8	213	87	0	870	38	11	12	37	1.80
1290764--1290809	6	7.7	6	87	0	65	52	2	10	34	1.49
1294282--1294378	24	4.0	24	98	0	185	32	12	13	41	1.82
1301294--1301997	106	6.6	106	93	1	1131	33	25	17	24	1.96
1302161--1302554	84	4.7	84	84	3	472	30	26	19	23	1.98
1302124--1302550	170	2.5	169	83	4	511	30	26	19	23	1.98
1304257--1304317	18	3.4	18	79	0	68	37	8	29	24	1.84
1304247--1304316	36	1.9	36	88	0	104	34	11	27	27	1.91
1305079--1305590	193	2.6	193	85	2	659	31	15	12	39	1.86
1305553--1305630	20	3.9	19	79	12	77	32	19	11	37	1.87
1305821--1305852	10	3.1	11	86	13	50	43	6	0	50	1.27
1306703--1306752	24	2.1	24	85	7	66	18	14	16	52	1.76
1311044--1311115	29	2.5	29	97	0	135	44	6	15	33	1.73
1311246--1311323	31	2.4	33	87	6	115	65	12	5	16	1.43
1311498--1311541	18	2.5	17	77	7	52	43	4	0	52	1.22
1311647--1311692	3	15.3	3	100	0	92	34	0	0	65	0.93
1313204--1313288	27	3.1	27	84	1	116	7	45	18	28	1.75
1313460--1313517	26	2.3	26	90	3	91	44	10	37	6	1.65
1314008--1314041	15	2.2	16	94	5	61	38	0	5	55	1.24
1316256--1316376	59	2.1	56	86	4	161	47	9	4	38	1.54
1316271--1316382	59	1.9	58	87	7	165	51	7	3	37	1.47
1316437--1316836	49	8.2	51	75	14	301	44	8	1	45	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1316437--1316836	26	16.3	26	75	15	232	44	8	1	45	1.44
1316461--1316752	14	22.1	13	73	19	200	44	8	2	44	1.47
1316622--1316790	50	3.1	52	65	22	128	45	10	1	42	1.49
1316552--1316824	113	2.5	112	89	5	416	44	8	1	45	1.44
1316774--1316831	11	5.1	12	85	10	86	43	5	0	51	1.24
1317026--1317103	21	3.9	20	69	12	61	44	11	0	43	1.40
1317037--1317225	49	3.8	49	98	0	360	46	11	0	42	1.40
1320110--1320134	5	5.0	5	100	0	50	60	0	0	40	0.97
1320512--1320572	17	3.4	17	75	16	59	49	11	0	39	1.39
1320700--1320732	5	6.6	5	100	0	66	0	39	0	60	0.97
1320999--1321106	50	2.3	44	84	9	135	50	9	0	39	1.41
1321073--1321135	28	2.2	30	94	5	112	57	12	0	30	1.36
1321077--1321142	28	2.4	28	87	10	107	56	12	0	31	1.36
1321112--1321160	21	2.3	21	85	3	71	53	16	0	30	1.43
1321524--1321574	25	2.0	25	92	0	84	27	19	33	19	1.96
1321700--1321757	19	3.3	19	70	22	63	24	37	20	17	1.93
1321762--1321860	29	3.4	29	91	0	162	11	32	30	26	1.91
1322029--1322215	60	3.1	59	79	8	148	33	20	4	41	1.73
1328489--1328547	30	1.9	31	82	3	75	30	13	10	45	1.76
1337053--1337118	27	2.4	27	82	0	96	16	7	34	40	1.77
1337234--1337284	22	2.3	22	90	6	77	43	1	3	50	1.31
1337781--1337814	3	11.3	3	100	0	68	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1341857--1341933	38	2.0	38	100	0	154	36	12	15	35	1.86
1349620--1349646	13	2.1	13	100	0	54	37	14	25	22	1.93
1352322--1352409	39	2.3	39	91	0	140	17	31	22	28	1.96
1356848--1356893	21	2.1	21	84	8	56	45	0	2	52	1.13
1358116--1358347	51	4.5	51	84	3	270	45	15	12	26	1.82
1363755--1363799	23	2.0	23	86	0	63	22	13	15	48	1.79
1366489--1366544	3	18.3	3	82	10	53	69	0	0	30	0.89
1366896--1367985	84	13.1	83	77	6	726	25	19	23	31	1.98
1366877--1367995	249	4.5	250	83	3	1188	25	19	23	31	1.98
1366976--1367900	333	2.8	333	85	2	1162	25	19	23	31	1.98
1366896--1367984	333	3.3	328	82	5	1158	25	19	23	31	1.98
1368119--1369086	110	8.8	110	89	0	1426	25	18	22	34	1.96
1372811--1372839	9	3.3	9	95	4	51	58	0	0	41	0.98
1372829--1372898	32	2.2	32	76	20	85	70	1	4	24	1.14
1373328--1373392	3	21.3	3	84	12	80	69	0	0	30	0.89
1379522--1379567	3	14.7	3	86	4	56	32	2	2	63	1.19
1387177--1387244	15	4.7	13	74	16	55	77	2	11	7	1.07
1387159--1387259	22	4.7	19	70	24	69	78	1	12	6	1.04
1387149--1387259	34	3.4	31	75	18	100	77	1	14	6	1.04
1387139--1387261	32	3.9	30	75	19	90	77	1	13	7	1.06
1387722--1387760	18	2.0	20	85	9	55	35	0	7	56	1.28
1393844--1393897	22	2.6	21	74	8	56	22	27	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1396129--1396176	16	3.0	16	100	0	96	37	0	37	25	1.56
1396305--1396343	18	2.0	20	85	9	55	35	0	7	56	1.28
1398992--1399690	254	2.7	250	82	7	877	33	16	15	34	1.90
1404191--1404234	22	2.0	22	81	0	52	52	15	2	29	1.55
1417092--1418116	106	9.6	106	91	2	1518	23	17	24	34	1.96
1424834--1424991	83	1.9	83	90	2	255	41	2	9	46	1.50
1426040--1426086	14	3.7	14	71	26	50	12	12	23	51	1.74
1426047--1426113	23	3.0	22	81	14	75	13	10	17	58	1.63
1426668--1426744	23	3.2	23	62	16	57	42	7	9	40	1.65
1426655--1426753	49	2.0	48	98	1	189	38	8	10	43	1.68
1426874--1426916	20	2.0	22	86	8	63	6	11	23	58	1.57
1426870--1426926	16	3.7	16	88	9	91	8	10	21	59	1.57
1426870--1426934	16	4.3	16	84	11	84	10	9	18	61	1.54
1426994--1427026	16	2.1	16	100	0	66	6	12	24	57	1.57
1427261--1427422	80	2.0	80	100	0	324	28	11	11	49	1.72
1428532--1428566	18	1.9	18	100	0	70	17	11	42	28	1.83
1428566--1428673	20	5.4	20	71	4	65	23	8	21	47	1.77
1428660--1428723	20	3.2	20	73	8	76	32	10	20	35	1.87
1429029--1429063	16	2.1	17	89	5	54	17	2	2	77	1.02
1429096--1429167	30	2.6	27	80	12	67	23	1	2	72	1.06
1433604--1434647	165	6.3	165	81	4	1002	30	24	19	25	1.98
1433584--1434647	249	4.3	248	82	4	1034	30	24	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1433570--1434624	414	2.6	414	90	0	1626	30	24	19	25	1.98
1436100--1436357	74	3.3	74	65	28	190	20	10	1	67	1.26
1436163--1436220	10	6.0	9	77	18	55	17	1	1	79	0.90
1436163--1436220	18	3.0	18	76	19	55	17	1	1	79	0.90
1436134--1436220	13	6.4	14	75	16	69	18	4	1	75	1.03
1436092--1436421	164	2.0	164	100	0	660	22	10	1	65	1.31
1436327--1436384	10	6.0	9	77	18	55	17	1	1	79	0.90
1436327--1436384	18	3.0	18	76	19	55	17	1	1	79	0.90
1436298--1436384	13	6.4	14	75	16	69	18	4	1	75	1.03
1440590--1440875	137	2.1	137	81	6	330	41	13	13	30	1.83
1443118--1443225	40	2.7	40	89	1	164	25	21	24	29	1.99
1443160--1443256	40	2.4	40	80	3	104	29	19	21	28	1.98
1443496--1443748	117	2.2	117	86	2	346	28	21	13	36	1.92
1443290--1443903	321	1.9	320	87	0	904	27	21	15	35	1.94
1445371--1445739	55	6.7	55	77	5	298	41	16	9	32	1.81
1447805--1447887	13	6.3	13	70	18	64	3	21	1	73	1.05
1447805--1447866	11	5.4	11	75	12	54	3	24	0	72	0.99
1447830--1447885	20	2.8	20	76	10	62	3	19	1	75	1.05
1447809--1447866	31	1.9	30	86	10	82	3	25	0	70	1.03
1447830--1447910	38	2.1	39	84	9	103	3	19	3	72	1.15
1451303--1451570	137	2.0	137	82	6	330	43	13	11	31	1.80
1457237--1457301	21	3.0	20	75	18	58	64	3	1	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1457817--1458059	35	6.6	35	79	10	231	44	3	7	45	1.48
1458095--1458126	7	4.4	7	96	4	55	31	0	0	68	0.90
1470266--1470342	32	2.3	32	91	4	118	51	19	0	28	1.47
1470884--1471022	20	6.8	20	76	9	104	33	23	9	33	1.87
1470885--1471022	61	2.3	60	81	5	152	33	23	9	33	1.87
1474543--1474599	29	2.0	29	92	0	96	24	15	26	33	1.95
1474584--1474629	20	2.3	20	80	0	56	47	10	19	21	1.80
1476464--1476555	21	4.4	21	76	5	78	22	18	34	23	1.96
1476464--1476557	42	2.2	42	88	0	134	22	19	35	23	1.96
1476500--1476582	21	4.0	21	85	4	105	25	18	36	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20