genome.fa.s8926.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008926.1 Hibiscus syriacus cultivar Beakdansim tig00112231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4069050

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  2  of  20  ( 2371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257254--257278	2	12.5	2	100	0	50	48	0	0	52	1.00
260241--260632	201	2.0	199	79	2	435	36	20	16	26	1.93
261126--261181	3	19.0	3	85	10	80	33	1	1	62	1.16
276257--276302	22	2.1	21	84	4	56	41	13	10	34	1.79
282853--282886	16	2.1	16	100	0	68	55	17	8	17	1.66
282853--282895	16	2.7	16	92	0	59	55	16	6	20	1.64
293613--293638	2	13.0	2	100	0	52	50	0	0	50	1.00
296890--296927	3	12.7	3	94	0	67	68	0	0	31	0.90
296894--296933	12	3.4	11	86	13	53	70	0	0	30	0.88
297121--297453	135	2.5	134	86	0	468	32	18	20	28	1.96
304995--305076	41	2.0	41	87	0	119	25	32	14	26	1.95
311198--311232	17	2.0	18	88	5	54	5	22	5	65	1.36
317097--317161	12	5.1	12	71	25	53	75	0	21	3	0.94
317106--317140	16	2.2	16	90	5	54	80	0	17	2	0.84
317104--317156	27	1.9	28	85	11	74	75	0	20	3	0.96
319633--319741	20	5.5	21	83	11	124	35	5	19	39	1.75
319633--319741	39	2.8	39	87	1	146	35	5	19	39	1.75
319733--319783	21	2.4	21	90	0	84	43	17	15	23	1.88
319835--319886	21	2.5	21	93	0	86	40	17	15	26	1.89
320241--320309	34	2.1	34	83	8	88	34	10	24	30	1.89
320929--321145	81	2.7	80	81	4	240	40	24	13	21	1.90
321292--321343	3	17.3	3	95	0	95	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328743--328809	13	5.1	13	71	18	50	73	0	22	4	1.01
328743--328824	27	3.1	26	78	18	89	71	0	21	6	1.07
331042--331129	42	2.1	41	87	2	122	26	20	19	34	1.96
331277--331488	80	2.6	79	81	7	214	37	21	16	24	1.93
334251--334294	22	2.0	22	86	8	63	20	9	0	70	1.14
334696--334720	2	12.5	2	100	0	50	48	0	0	52	1.00
335597--336198	133	4.5	134	83	2	712	33	19	18	28	1.95
335579--336198	267	2.3	265	83	2	769	33	19	18	28	1.95
336920--337113	38	4.6	45	79	11	152	37	18	19	24	1.94
337007--337733	38	18.8	38	81	4	821	38	17	19	25	1.93
337002--337732	156	4.7	155	87	2	961	38	17	19	25	1.93
339654--339731	12	7.1	11	68	16	54	3	23	0	73	1.00
339660--339739	15	5.4	15	72	19	53	6	21	0	72	1.06
339748--339788	15	2.7	16	77	14	59	4	14	0	80	0.87
339647--339723	16	4.6	16	72	20	50	3	22	0	74	0.98
339647--339784	22	6.1	23	77	13	135	5	21	0	73	1.01
345571--345617	2	23.5	2	100	0	94	48	0	0	51	1.00
349106--349167	2	32.0	2	87	6	92	48	1	1	48	1.21
349464--349576	60	1.9	60	81	3	138	37	14	15	33	1.87
350450--350585	68	2.0	68	97	0	254	50	11	5	32	1.61
350929--350961	2	16.5	2	100	0	66	48	0	0	51	1.00
352180--352221	14	3.2	14	83	12	54	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355590--355622	16	1.9	18	88	11	52	39	3	6	51	1.42
356600--356651	24	2.2	24	86	6	70	38	19	19	23	1.93
365753--365831	18	4.5	17	79	7	68	34	16	17	31	1.93
365774--365832	17	3.4	17	77	13	66	35	13	18	32	1.90
365818--365862	18	2.5	18	81	0	54	33	11	11	44	1.75
366342--366375	17	2.0	17	88	0	50	35	23	11	29	1.90
368823--368884	30	2.1	30	81	3	72	43	3	17	35	1.66
371683--371915	116	2.0	116	100	0	466	30	12	14	42	1.82
374199--374236	15	2.5	15	95	0	67	18	26	31	23	1.97
381249--381285	17	2.1	18	95	5	67	29	29	21	18	1.97
383045--383165	32	3.8	32	80	0	143	19	10	30	38	1.86
383037--383165	64	2.0	64	83	0	159	18	10	31	39	1.85
390806--390841	8	4.5	8	100	0	72	52	0	36	11	1.37
392848--392903	3	18.7	3	87	7	78	35	1	0	62	1.06
392848--392907	16	3.9	15	87	10	68	36	1	0	61	1.06
393670--393706	19	1.9	19	88	0	56	21	10	43	24	1.84
395057--395200	59	2.5	59	93	1	236	38	10	21	29	1.87
395466--395499	17	1.9	18	88	5	52	38	8	17	35	1.81
402046--402188	59	2.4	59	92	1	234	38	9	20	31	1.85
402455--402488	17	1.9	18	88	5	52	38	8	17	35	1.81
405495--405531	19	1.9	19	89	10	58	32	5	2	59	1.34
411395--411476	42	2.0	42	90	0	128	30	17	25	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411988--412037	22	2.3	22	92	0	82	38	14	10	38	1.79
412909--412974	3	23.7	3	80	14	79	36	1	1	60	1.15
412912--412974	8	7.6	8	84	12	83	36	1	1	60	1.16
412912--412974	25	2.5	26	87	10	96	36	1	1	60	1.16
412915--412983	22	3.2	21	74	15	70	39	2	1	56	1.23
413718--413770	22	2.4	22	77	0	61	20	20	41	16	1.90
414222--414258	19	1.9	19	89	10	58	32	5	2	59	1.34
414223--414268	19	2.5	19	82	10	51	34	6	4	54	1.46
414285--414339	15	3.7	15	75	18	51	45	0	5	49	1.25
414264--414343	18	4.3	18	67	25	51	45	1	3	50	1.28
418014--418072	24	2.5	24	72	5	57	23	18	13	44	1.86
425096--425124	14	2.1	14	100	0	58	37	13	34	13	1.85
430121--430160	18	2.2	18	86	0	53	50	2	15	32	1.57
431362--431433	24	3.0	24	89	4	110	20	20	25	33	1.97
432879--432904	11	2.4	11	100	0	52	46	0	0	53	1.00
433469--433502	16	2.2	15	89	5	50	67	8	5	17	1.37
433611--433681	24	3.0	24	78	19	87	47	16	5	29	1.70
434285--434324	21	2.0	21	85	5	55	42	10	20	27	1.83
437137--437171	12	2.9	12	86	0	52	20	8	31	40	1.82
438810--438859	18	2.7	18	79	14	57	28	24	18	30	1.97
440638--440698	31	2.0	31	90	0	95	22	1	37	37	1.65
442954--443033	40	2.0	40	85	0	106	27	22	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455259--455295	19	2.1	18	90	10	58	27	24	5	43	1.76
456506--456731	111	2.0	112	99	0	445	36	19	15	27	1.93
463874--463913	21	1.9	21	84	0	53	17	40	2	40	1.63
467023--467296	135	2.0	135	97	0	512	35	22	13	28	1.93
469355--469951	82	7.3	82	87	1	813	33	13	23	29	1.93
469355--469951	163	3.7	163	87	2	840	33	13	23	29	1.93
469979--470077	49	2.0	49	84	0	126	29	14	23	33	1.94
474855--474918	29	2.2	30	80	5	76	34	20	4	40	1.73
477937--478131	82	2.4	82	87	0	282	35	12	20	31	1.90
478073--478193	62	2.0	62	89	0	188	33	9	21	34	1.87
477989--478277	144	2.0	144	100	0	578	34	11	21	32	1.89
478135--478889	82	9.2	82	87	0	1010	34	12	22	29	1.92
480844--480919	2	41.0	2	85	15	110	51	0	0	48	1.00
500565--500592	2	14.0	2	100	0	56	50	0	0	50	1.00
502961--503010	20	2.5	20	90	3	75	32	10	2	56	1.44
504529--504600	20	3.6	20	73	14	67	36	12	18	33	1.88
508541--508580	13	2.9	14	81	7	55	27	20	22	30	1.98
508599--508642	18	2.4	19	92	3	72	15	22	27	34	1.95
509300--509693	47	8.4	47	93	1	661	34	19	6	39	1.77
510848--510913	29	2.3	29	82	7	80	33	21	6	39	1.78
515144--515212	35	1.9	35	88	2	102	36	15	18	28	1.92
517963--518049	32	2.7	32	83	0	120	36	17	12	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519700--519988	54	5.4	54	82	0	344	25	19	18	35	1.95
519700--519988	108	2.7	107	86	3	391	25	19	18	35	1.95
526522--526856	54	6.2	54	85	0	395	27	16	19	37	1.93
526522--526856	108	3.1	107	87	1	456	27	16	19	37	1.93
529218--529248	2	15.5	2	100	0	62	51	0	0	48	1.00
540881--540926	24	1.9	24	95	0	83	10	32	17	39	1.84
541197--541265	33	2.1	33	91	0	111	23	8	18	49	1.75
541460--541484	13	1.9	13	100	0	50	40	0	4	56	1.18
541842--541874	17	1.9	17	88	11	50	45	0	0	54	0.99
544336--544383	15	3.2	15	77	11	53	35	39	0	25	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20