genome.fa.s8926.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008926.1 Hibiscus syriacus cultivar Beakdansim tig00112231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4069050

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  9  of  20  ( 2371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1664987--1665063	30	2.6	30	80	0	91	29	11	5	53	1.59
1665206--1665463	49	5.3	49	77	4	227	38	22	13	25	1.90
1665206--1665463	98	2.7	98	77	4	263	38	22	13	25	1.90
1671857--1671929	29	2.5	29	77	6	85	27	17	5	49	1.69
1672135--1672329	49	4.0	49	81	2	239	39	24	12	24	1.89
1672135--1672329	98	2.0	98	85	2	266	39	24	12	24	1.89
1672392--1672490	52	1.9	52	87	0	144	42	21	2	34	1.64
1673220--1673261	20	2.0	22	86	13	61	33	26	0	40	1.56
1684361--1684428	30	2.3	30	92	0	109	36	10	20	32	1.86
1689852--1689892	17	2.4	17	100	0	82	9	36	4	48	1.58
1691567--1691683	60	2.0	58	83	6	146	46	1	3	48	1.29
1691607--1691641	7	5.1	7	86	6	54	42	0	0	57	0.99
1691634--1691671	17	2.3	17	90	4	60	44	2	5	47	1.39
1691581--1691693	45	2.6	41	82	12	127	46	1	3	48	1.29
1691723--1691763	18	2.4	17	83	4	55	39	0	9	51	1.35
1694209--1694276	35	2.0	34	85	2	91	57	2	8	30	1.44
1695477--1695627	75	2.0	75	93	0	257	39	20	12	27	1.89
1697464--1697506	22	2.0	22	90	0	68	58	16	2	23	1.50
1697920--1697952	2	17.0	2	87	6	50	48	3	0	48	1.17
1697900--1697952	23	2.3	22	84	12	63	47	7	0	45	1.31
1698246--1698353	55	2.0	55	94	3	191	17	28	9	44	1.80
1706751--1706790	20	2.0	21	95	5	73	25	20	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1721403--1721484	36	2.2	36	82	6	94	34	20	10	34	1.88
1721630--1721884	131	1.9	132	85	3	352	25	20	12	41	1.87
1721615--1721890	66	4.2	66	78	8	253	27	19	11	40	1.87
1721958--1722111	43	3.5	43	69	11	130	28	30	15	25	1.96
1722390--1722446	3	19.0	3	100	0	114	33	0	0	66	0.92
1726977--1727158	101	1.8	101	90	2	258	28	28	19	23	1.98
1732080--1732373	55	5.3	55	82	4	333	38	16	13	30	1.88
1736403--1736433	14	2.2	14	100	0	62	45	6	6	41	1.55
1737442--1737494	27	2.0	27	96	0	97	41	15	9	33	1.79
1738966--1739028	31	2.0	31	100	0	126	38	9	9	42	1.70
1750758--1750814	20	2.8	20	94	2	96	26	35	26	12	1.92
1754078--1754548	236	2.0	234	97	1	899	27	20	15	36	1.93
1756668--1757241	112	5.1	112	95	1	1001	44	14	15	25	1.84
1757189--1757521	162	2.1	162	92	0	549	42	12	15	29	1.83
1758175--1758222	23	2.1	23	92	0	78	37	18	8	35	1.81
1758913--1758953	20	2.0	20	95	0	73	36	7	19	36	1.80
1762728--1762821	47	2.0	47	100	0	188	21	21	14	42	1.88
1764049--1764264	108	2.0	108	100	0	432	42	17	15	24	1.88
1764349--1764389	20	2.0	20	95	0	73	36	9	17	36	1.82
1764351--1764398	20	2.3	20	89	3	69	39	8	18	33	1.81
1764662--1765023	153	2.3	156	85	6	473	43	9	12	34	1.74
1767703--1767751	21	2.3	21	92	0	80	28	12	12	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1774109--1774168	26	2.3	26	100	0	120	46	15	11	26	1.79
1777921--1778173	126	2.0	126	99	0	497	20	20	12	45	1.84
1781391--1781496	33	3.2	33	97	1	194	37	0	0	62	0.96
1781545--1781577	16	2.1	16	100	0	66	24	0	18	57	1.40
1782542--1782640	51	1.9	51	81	4	119	34	11	15	39	1.82
1786309--1786355	24	2.0	24	100	0	94	31	29	4	34	1.77
1787335--1787459	42	3.0	42	91	0	205	38	8	18	35	1.80
1787576--1787642	28	2.5	28	78	4	75	56	8	8	25	1.59
1788278--1788667	37	10.4	36	72	18	234	44	4	5	45	1.47
1788296--1788518	74	3.0	74	84	7	274	43	4	5	46	1.45
1788517--1788653	70	2.0	69	81	11	163	45	4	6	43	1.50
1788674--1788735	12	4.8	12	79	13	61	20	1	1	75	0.97
1788672--1788735	4	16.2	4	74	20	55	21	1	1	75	0.98
1791810--1791875	21	3.1	21	75	14	73	42	12	12	33	1.79
1795293--1795381	21	4.2	21	68	16	67	41	11	14	32	1.81
1795827--1795865	3	13.3	3	94	5	71	30	0	0	69	0.89
1797050--1797075	2	13.0	2	100	0	52	50	0	0	50	1.00
1798219--1798679	112	4.1	112	92	1	730	45	14	14	25	1.83
1798219--1798676	222	2.1	224	90	1	724	45	14	14	25	1.83
1798552--1799181	182	3.5	181	90	3	1000	42	13	16	27	1.86
1804267--1804927	138	4.8	137	85	3	817	24	20	20	34	1.96
1804300--1804927	275	2.3	274	86	2	857	25	20	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1805020--1805059	21	1.9	21	94	0	71	45	0	0	55	0.99
1805782--1805851	21	3.3	21	81	0	77	20	25	31	22	1.98
1806432--1806467	17	2.1	17	90	10	56	52	5	0	41	1.24
1818066--1818122	29	2.0	29	86	6	80	33	22	1	42	1.64
1830951--1830978	5	5.6	5	100	0	56	21	0	39	39	1.54
1831849--1831887	20	2.0	20	89	0	60	58	7	7	25	1.52
1831866--1831921	25	2.2	26	78	9	71	62	3	3	30	1.29
1831907--1831950	22	2.0	21	86	4	61	61	0	4	34	1.16
1833312--1833394	3	26.3	3	71	9	58	37	3	3	55	1.35
1833312--1833394	13	6.6	12	72	6	58	37	3	3	55	1.35
1833317--1833361	16	2.8	16	82	0	63	37	2	2	57	1.23
1834302--1834363	19	3.3	18	70	20	56	38	8	17	35	1.80
1834295--1834368	37	2.0	38	94	2	132	39	9	17	33	1.82
1834339--1834624	26	11.2	26	64	17	116	27	10	19	41	1.85
1834339--1834615	51	5.4	51	86	4	380	27	11	19	41	1.85
1839359--1839415	17	3.3	17	79	16	64	33	0	1	64	1.04
1839404--1839473	23	2.8	25	85	10	83	44	0	1	54	1.09
1839362--1839477	12	9.7	12	66	13	60	37	0	1	60	1.07
1839368--1839532	65	2.6	63	84	10	212	39	0	1	58	1.13
1839527--1839588	19	3.3	19	78	15	58	37	1	0	61	1.06
1840040--1840099	31	1.9	31	96	0	111	45	6	6	41	1.57
1842696--1843524	55	15.5	55	83	3	852	29	24	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1842949--1843532	51	11.1	51	83	5	613	28	25	15	31	1.95
1842859--1843532	102	6.4	103	86	4	725	28	25	15	30	1.96
1843547--1843652	37	2.9	37	85	5	126	25	18	18	36	1.94
1844930--1845066	19	7.2	19	66	18	63	10	19	0	69	1.22
1844925--1845117	8	22.5	8	67	27	55	9	19	0	70	1.18
1844998--1845059	27	2.3	27	83	8	81	12	20	0	66	1.25
1844998--1845050	27	2.0	28	88	7	83	15	20	0	64	1.29
1845048--1845104	17	3.2	18	75	5	62	3	17	0	78	0.88
1845040--1845113	36	2.1	36	87	2	105	4	20	0	75	0.96
1845048--1845113	17	3.9	17	74	18	57	3	19	0	77	0.90
1844958--1845122	19	9.4	16	70	18	57	8	20	0	70	1.17
1848604--1848630	8	3.4	8	100	0	54	48	11	0	40	1.39
1858649--1858702	2	27.5	2	96	3	101	50	0	0	50	1.00
1858959--1858984	2	13.0	2	100	0	52	50	0	0	50	1.00
1861332--1861399	27	2.5	27	80	0	73	55	7	7	29	1.54
1863765--1863817	20	2.8	20	82	5	56	50	5	13	30	1.64
1866060--1866097	8	4.1	9	84	15	51	65	2	2	28	1.19
1866060--1866103	20	2.2	20	87	0	61	65	2	2	29	1.16
1866719--1866762	13	3.5	13	90	6	72	18	52	15	13	1.75
1866780--1866865	32	2.7	33	81	5	113	51	0	0	48	1.00
1866868--1866922	24	2.3	24	90	0	83	25	47	14	12	1.80
1866868--1866922	12	4.6	12	81	0	65	25	47	14	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1867716--1867751	3	12.0	3	100	0	72	66	0	0	33	0.92
1871377--1871421	18	2.6	18	89	3	65	53	0	4	42	1.21
1871725--1871807	21	3.7	21	71	16	67	38	6	8	46	1.59
1872339--1872368	14	2.1	15	93	6	53	70	0	30	0	0.88
1873168--1873228	21	3.0	21	92	2	97	31	18	26	24	1.97
1873600--1873639	18	2.2	19	90	4	64	22	5	0	72	1.04
1881340--1881371	3	11.0	3	93	6	57	65	0	0	34	0.93
1886463--1886850	193	2.0	193	100	0	776	28	13	18	39	1.89
1891789--1892525	346	2.1	346	87	1	1046	33	16	14	34	1.90
1896120--1896147	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20