genome.fa.s8926.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008926.1 Hibiscus syriacus cultivar Beakdansim tig00112231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4069050

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  20  of  20  ( 2371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3835751--3836260	261	2.0	261	97	0	975	28	17	10	44	1.81
3837548--3837591	11	4.0	11	90	0	70	40	27	11	20	1.86
3837540--3837590	22	2.3	22	93	0	84	37	27	13	21	1.91
3839808--3839908	7	14.6	7	75	2	51	25	0	29	43	1.61
3839811--3839864	14	3.9	14	85	0	72	22	1	25	50	1.59
3839808--3839850	21	2.0	21	86	0	59	20	2	32	44	1.65
3840429--3840485	14	4.1	14	71	13	55	42	0	5	52	1.24
3846053--3846176	62	2.0	62	100	0	248	20	29	27	22	1.99
3849952--3850030	24	3.7	22	75	19	71	31	17	26	24	1.97
3852285--3852367	38	2.4	36	81	18	104	56	8	8	26	1.57
3852285--3852371	35	2.5	34	77	18	90	56	8	8	27	1.56
3854745--3854787	18	2.4	19	80	11	54	65	2	0	32	1.06
3855699--3855794	43	2.2	43	85	3	131	45	10	15	28	1.79
3862417--3862502	6	14.3	6	92	0	127	31	46	16	5	1.70
3868443--3868482	18	2.1	20	86	9	57	17	12	12	57	1.65
3884498--3884542	14	3.4	14	77	22	60	26	28	6	37	1.82
3884494--3884546	26	2.0	26	100	0	106	26	26	7	39	1.83
3885453--3885704	30	8.5	30	83	3	294	59	9	14	17	1.60
3886475--3886538	28	2.4	26	82	10	83	12	20	6	60	1.53
3887036--3887062	3	9.0	3	100	0	54	66	0	0	33	0.92
3887301--3887519	111	2.0	111	87	1	314	23	15	32	28	1.95
3887404--3887648	131	1.9	131	86	1	348	23	15	33	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3887671--3887987	133	2.4	132	86	2	422	36	14	23	26	1.92
3887671--3887998	66	4.9	66	87	3	408	37	14	22	25	1.92
3888044--3888165	37	3.3	36	76	7	104	40	13	17	28	1.87
3888484--3888541	16	3.6	16	95	0	98	18	0	25	55	1.43
3892287--3892349	32	2.0	32	90	0	99	55	9	15	19	1.67
3894088--3894330	30	8.1	30	76	10	203	61	10	12	15	1.56
3894104--3894294	61	3.2	59	77	6	206	60	10	13	15	1.59
3894134--3894329	91	2.2	90	80	9	215	60	11	12	14	1.59
3894104--3894332	120	1.9	120	81	12	274	60	11	12	15	1.59
3895660--3895698	3	13.3	3	89	5	62	66	2	0	30	1.05
3899395--3899447	26	2.0	26	92	0	88	33	5	7	52	1.53
3903045--3903070	3	8.7	3	100	0	52	69	0	30	0	0.89
3903541--3903607	26	2.6	26	75	20	68	52	0	10	37	1.36
3903597--3903653	17	3.3	17	78	4	60	63	0	3	33	1.12
3904518--3904964	218	2.0	220	97	1	853	43	11	8	37	1.70
3910891--3910915	9	2.8	9	100	0	50	56	24	12	8	1.62
3911842--3912352	4	132.2	4	72	7	205	36	0	61	1	1.08
3911844--3912352	12	43.4	12	74	15	311	36	0	61	1	1.08
3911893--3912350	8	56.9	8	73	14	277	35	0	63	1	1.06
3913289--3913356	32	2.1	32	86	5	93	25	11	19	44	1.84
3914416--3914469	20	2.7	20	82	8	65	25	14	22	37	1.93
3916068--3916119	20	2.5	22	75	12	56	36	19	11	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3916937--3917085	46	3.2	47	95	1	257	38	26	10	24	1.88
3918960--3919043	44	1.9	44	100	0	168	44	10	16	28	1.81
3919954--3920037	44	1.9	44	100	0	168	44	10	16	28	1.81
3918536--3920517	993	2.0	996	95	1	3612	36	15	16	31	1.90
3923505--3923838	47	7.1	47	90	0	499	45	11	21	21	1.84
3923614--3923832	20	9.6	20	65	23	78	44	10	23	21	1.84
3929301--3929354	21	2.6	21	93	0	90	31	25	18	24	1.97
3934460--3934492	6	5.5	6	100	0	66	15	51	0	33	1.43
3940785--3940896	2	56.5	2	90	1	181	46	0	0	52	1.06
3940944--3941166	85	2.6	85	92	1	349	31	17	21	29	1.96
3941075--3941371	96	3.1	96	98	0	558	32	18	19	28	1.96
3941337--3941381	13	3.5	13	87	0	63	31	22	20	26	1.98
3942776--3942815	15	2.7	15	88	7	55	42	22	0	35	1.54
3952503--3952533	16	2.0	16	93	6	55	58	12	9	19	1.62
3952502--3952536	15	2.4	14	86	13	52	57	14	8	20	1.63
3953984--3954040	28	2.0	28	100	0	114	24	14	17	43	1.86
3968129--3968178	19	2.6	19	75	15	57	18	0	4	78	0.91
3976542--3976594	12	4.5	11	77	13	52	75	1	1	20	0.99
3976542--3976574	6	5.5	6	89	10	50	81	0	0	18	0.68
3978165--3978205	21	2.0	21	90	4	66	26	17	14	41	1.88
3980691--3981148	71	6.5	71	83	2	494	36	9	22	31	1.86
3980728--3981046	34	9.1	34	66	11	106	37	10	22	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3980691--3981148	141	3.2	141	84	2	553	36	9	22	31	1.86
3981238--3981296	18	3.2	19	87	4	77	38	1	18	40	1.61
3981246--3981296	18	2.8	18	93	0	84	39	1	21	37	1.65
3990440--3990488	2	25.0	2	95	4	91	51	0	0	48	1.00
3995209--3995238	14	2.1	14	100	0	60	43	36	0	20	1.52
3998252--3998291	19	2.1	19	85	0	53	40	15	0	45	1.46
4005823--4005898	23	3.3	23	78	18	86	47	6	0	46	1.28
4013329--4013394	34	2.0	34	85	8	91	37	24	12	25	1.90
4019904--4020002	33	3.0	34	88	4	148	39	24	12	24	1.89
4027965--4028284	70	4.6	69	78	2	264	29	21	17	31	1.96
4028111--4028285	69	2.5	70	85	2	228	29	20	17	32	1.96
4028364--4028589	51	4.4	51	81	1	220	42	15	8	32	1.78
4028402--4028482	25	3.2	24	66	19	58	45	13	9	30	1.76
4028897--4028935	18	2.2	18	95	0	69	41	35	2	20	1.66
4031663--4031747	42	2.0	42	100	0	170	34	9	16	40	1.81
4039585--4039873	25	11.5	25	63	16	78	41	18	11	28	1.85
4039560--4039909	51	7.0	51	81	3	399	41	19	11	28	1.85
4039889--4039949	26	2.4	26	83	2	79	42	22	8	26	1.81
4039560--4039949	100	3.9	102	81	5	445	41	19	11	27	1.85
4053786--4053815	16	1.9	16	93	6	53	26	0	46	26	1.53
4064122--4064147	13	2.0	13	100	0	52	23	0	23	53	1.46
4065428--4066003	81	7.2	81	84	3	745	38	10	20	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4065428--4066004	161	3.6	161	86	3	756	38	10	20	30	1.87
4066065--4066154	44	2.0	45	82	6	112	45	5	21	27	1.74
4067278--4067312	18	1.9	18	100	0	70	22	5	42	28	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20

The End!