genome.fa.s9639.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15077257

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   

This is table  48  of  62  ( 7398 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10777193--10777299	34	3.3	31	75	13	92	46	2	10	40	1.52
10777447--10777489	3	13.7	3	85	9	50	37	2	0	60	1.10
10783514--10783588	8	9.6	8	78	5	73	50	13	0	36	1.42
10783522--10783589	2	34.0	2	81	0	64	50	11	0	38	1.39
10783513--10783580	22	3.0	22	84	4	73	50	16	0	33	1.45
10783513--10783589	30	2.6	30	93	0	127	49	14	0	36	1.43
10807181--10807221	2	20.0	2	90	5	64	46	0	4	48	1.23
10810883--10810912	15	2.0	15	93	0	51	46	3	13	36	1.60
10822865--10823033	86	2.0	86	82	4	207	28	16	27	27	1.97
10832198--10832266	21	3.3	21	70	11	70	33	18	15	31	1.93
10832174--10832282	41	2.6	41	85	4	148	31	21	14	33	1.93
10832896--10832940	19	2.4	19	85	10	65	68	4	11	15	1.34
10832869--10832926	28	2.1	27	81	9	64	72	3	12	12	1.24
10835158--10835218	30	2.0	31	96	3	115	36	34	3	26	1.73
10835599--10835657	29	2.0	29	83	6	73	32	20	8	38	1.83
10838916--10839501	293	2.0	293	99	0	1154	32	21	13	31	1.92
10855143--10855169	3	9.0	3	100	0	54	33	0	0	66	0.92
10855116--10855173	18	3.3	19	74	13	54	46	0	0	53	1.00
10868524--10868562	20	2.0	20	89	0	60	33	10	23	33	1.88
10871612--10871667	28	2.0	28	96	0	103	25	16	28	30	1.96
10876746--10876786	20	2.1	19	86	4	55	48	0	2	48	1.14
10880806--10880847	14	3.1	13	81	18	50	23	2	0	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10880810--10880848	20	1.9	21	89	5	62	25	2	0	71	0.98
10882084--10882314	115	2.0	115	100	0	462	33	15	19	31	1.93
10882820--10882854	16	2.2	16	100	0	70	31	25	17	25	1.97
10883334--10883374	21	2.0	21	85	9	57	34	14	9	41	1.79
10884594--10884631	12	2.8	13	88	11	51	78	5	10	5	1.06
10884621--10884702	21	3.8	22	80	9	98	71	1	24	2	1.05
10884612--10884705	9	10.4	9	70	18	54	73	2	22	2	1.05
10887624--10888006	99	3.9	97	78	11	316	32	16	11	39	1.84
10887699--10888027	96	3.4	96	78	11	287	32	16	11	39	1.84
10888305--10889505	139	8.7	139	90	1	1831	35	16	20	26	1.94
10888305--10889522	277	4.4	278	93	0	1974	35	17	20	27	1.94
10888304--10889505	416	2.9	416	91	0	1931	35	16	20	26	1.94
10890611--10890656	21	2.2	21	84	7	58	36	0	41	21	1.54
10891552--10891582	4	7.8	4	100	0	62	22	0	0	77	0.77
10894944--10894995	23	2.3	23	89	0	77	34	3	7	53	1.48
10902251--10902724	233	2.0	233	99	0	939	38	21	14	26	1.91
10902645--10902857	42	5.1	42	87	1	302	38	19	13	28	1.89
10909816--10910141	55	5.9	55	90	0	481	27	18	18	34	1.95
10910814--10910863	24	2.1	24	92	0	82	56	22	8	14	1.64
10912702--10912782	3	27.3	3	78	12	87	30	1	0	67	0.98
10912703--10912780	24	3.3	23	85	5	102	29	1	0	69	0.97
10913869--10913913	21	2.2	20	88	11	65	31	4	0	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10914033--10914077	23	2.0	21	83	8	54	44	0	2	53	1.13
10914193--10914230	18	2.2	17	90	4	58	28	0	0	71	0.87
10914062--10914342	151	1.9	147	82	6	323	39	6	8	45	1.61
10919541--10919633	8	11.9	8	77	19	90	76	1	22	0	0.85
10919543--10919634	9	10.6	9	72	23	81	77	1	21	0	0.84
10919549--10919613	14	5.1	13	77	19	66	75	1	23	0	0.89
10919543--10919627	12	7.6	11	75	22	56	76	1	22	0	0.85
10919540--10919634	46	2.0	47	84	9	124	76	1	22	0	0.84
10919543--10919634	17	5.3	18	73	22	81	77	1	21	0	0.84
10921259--10921371	54	2.1	54	88	0	163	36	13	23	27	1.92
10921731--10921777	23	2.1	23	92	4	78	31	10	12	44	1.77
10922807--10922892	42	2.0	42	90	0	136	25	22	22	30	1.99
10922520--10922922	129	3.1	129	92	0	673	29	18	18	32	1.95
10923262--10923359	3	33.3	3	78	11	96	30	2	0	67	1.02
10923256--10923352	20	4.6	20	79	12	97	28	2	0	69	1.00
10923262--10923359	17	6.1	17	79	12	91	30	2	0	67	1.02
10923680--10923874	96	2.0	98	97	2	376	54	20	20	4	1.60
10924458--10924502	21	2.2	20	88	11	65	31	4	0	64	1.13
10926342--10926367	10	2.6	10	100	0	52	34	0	0	65	0.93
10926658--10926922	37	7.1	36	79	8	264	45	3	8	42	1.51
10926658--10926922	111	2.4	110	82	5	291	45	3	8	42	1.51
10926907--10926957	2	25.0	2	96	4	93	49	0	1	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10929434--10929470	15	2.5	15	91	4	58	43	0	0	56	0.99
10937008--10937155	74	2.0	74	100	0	296	36	22	16	24	1.94
10941158--10941197	21	2.0	20	85	5	53	25	25	7	42	1.80
10943678--10943722	20	2.3	20	84	3	56	57	2	0	40	1.11
10944901--10945556	81	8.1	81	89	1	911	32	22	10	34	1.88
10944901--10945556	244	2.7	243	89	1	976	32	22	10	34	1.88
10946946--10946985	19	2.0	21	85	9	57	7	30	5	57	1.48
10951816--10951853	14	2.5	15	83	12	51	68	0	10	21	1.19
10956493--10956896	45	9.0	45	88	2	440	26	23	11	39	1.88
10956512--10956952	135	3.3	134	82	4	363	26	22	10	40	1.86
10956600--10956952	45	7.8	45	88	3	293	25	22	10	41	1.85
10956780--10956952	92	1.9	90	93	2	301	24	20	7	47	1.75
10956985--10957189	68	3.0	68	82	5	261	31	25	12	30	1.93
10957395--10957606	57	3.7	57	89	3	311	39	17	8	33	1.80
10959473--10960130	81	8.1	81	88	3	831	32	21	10	35	1.87
10959446--10960130	163	4.2	162	86	3	867	32	21	10	35	1.88
10968537--10968572	18	2.0	18	100	0	72	33	16	33	16	1.92
10971307--10971511	45	4.6	45	83	0	232	24	23	12	39	1.89
10971480--10971653	47	3.8	47	81	6	212	25	18	6	48	1.72
10971707--10971898	67	2.9	67	87	3	269	30	26	14	29	1.95
10972069--10972310	113	2.1	114	84	6	305	37	17	8	36	1.80
10972069--10972310	57	4.3	57	82	6	296	37	17	8	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10975216--10975246	15	2.0	16	93	6	55	35	6	0	58	1.24
10976654--10976901	45	5.5	45	83	5	241	28	21	12	36	1.91
10976654--10976876	90	2.5	90	85	3	288	28	21	13	36	1.91
10976965--10977174	68	3.1	68	78	6	235	31	23	13	31	1.93
10977363--10977581	57	3.8	57	88	0	321	39	16	9	34	1.81
10981269--10981583	45	7.0	45	85	4	359	27	23	12	37	1.90
10981512--10981726	45	4.8	45	85	4	247	25	21	6	46	1.76
10981315--10981671	135	2.7	135	79	5	350	26	22	10	39	1.87
10981324--10981717	90	4.4	89	80	5	296	26	22	10	41	1.85
10981560--10981726	89	1.9	88	92	1	280	25	20	5	48	1.70
10981759--10981963	68	3.0	68	86	1	268	30	26	14	28	1.95
10982147--10982323	57	3.1	56	84	3	239	36	18	9	35	1.84
10985328--10985361	17	1.9	18	88	5	52	70	2	8	17	1.25
10988219--10988326	54	2.0	54	94	0	189	38	21	13	25	1.91
10992891--10993384	81	6.1	81	85	2	650	32	21	10	35	1.87
10995092--10995150	19	2.9	20	80	11	75	32	15	23	28	1.95
10995578--10995833	45	6.2	43	73	20	199	37	12	23	25	1.90
10995623--10995761	34	3.8	34	71	18	116	35	12	23	28	1.92
10995568--10995775	79	2.6	79	96	0	389	36	12	24	26	1.91
10995748--10995843	46	2.1	47	96	2	176	42	11	23	21	1.86
10995758--10996053	72	4.2	72	79	13	371	46	10	22	20	1.81
10995830--10996067	46	5.2	46	93	0	413	46	10	22	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10995784--10996067	92	3.1	90	87	6	353	46	10	22	20	1.80
11006588--11006733	76	1.9	80	82	5	192	44	5	8	41	1.57
11007700--11007750	17	2.9	18	82	5	68	39	17	3	39	1.68
11011237--11011276	18	2.2	18	95	0	71	30	25	10	35	1.88
11011339--11011381	22	2.0	22	90	0	68	37	25	6	30	1.82
11011547--11011630	2	42.0	2	100	0	168	50	0	0	50	1.00
11019871--11019916	13	3.3	14	81	9	58	73	15	8	2	1.16
11020448--11020505	24	2.4	24	88	0	89	5	17	12	65	1.43
11032157--11032185	2	14.5	2	100	0	58	48	0	0	51	1.00
11045584--11045758	88	2.0	88	94	0	305	26	21	19	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62