genome.fa.s9639.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15077257

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   

This is table  62  of  62  ( 7398 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14901781--14901855	25	3.0	25	80	5	80	32	1	20	46	1.59
14905181--14905230	20	2.5	20	83	6	66	38	2	14	46	1.56
14907240--14907281	20	2.2	19	83	12	50	35	9	4	50	1.56
14907343--14907376	15	2.2	16	89	5	52	82	8	0	8	0.85
14907837--14908133	88	3.4	87	87	3	418	30	19	20	29	1.97
14915627--14915671	22	2.0	22	91	0	72	22	20	24	33	1.97
14915672--14915770	23	4.3	23	87	5	128	27	22	23	27	1.99
14915672--14915805	46	3.0	45	82	8	148	26	21	23	28	1.99
14929526--14929572	24	1.9	24	82	4	58	42	8	10	38	1.70
14929705--14929751	24	1.9	24	82	4	58	42	8	10	38	1.70
14929459--14929801	179	1.9	183	97	2	658	30	9	19	40	1.83
14936290--14936318	2	14.5	2	100	0	58	48	0	0	51	1.00
14941442--14941482	18	2.3	18	86	0	55	46	2	14	36	1.58
14941454--14941501	18	2.7	18	83	3	62	41	2	8	47	1.45
14944197--14944233	18	2.0	19	85	15	51	64	5	0	29	1.15
14945018--14945058	18	2.3	18	91	0	64	31	14	31	21	1.94
14948399--14948437	21	1.9	20	89	5	60	46	5	0	48	1.24
14950094--14950219	33	3.5	33	67	19	92	45	9	18	26	1.80
14950069--14950224	75	2.1	75	98	0	303	44	9	17	28	1.81
14952795--14952875	40	2.0	40	95	0	144	37	34	12	16	1.86
14953696--14953738	18	2.3	18	84	11	52	55	13	16	13	1.69
14955032--14955096	29	2.2	29	97	0	121	36	3	21	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14956523--14956582	17	3.6	17	76	10	61	40	16	1	41	1.58
14959602--14959935	75	4.4	75	86	0	443	38	13	15	32	1.86
14959602--14959935	151	2.2	150	88	1	490	38	13	15	32	1.86
14959910--14959981	23	3.1	23	84	7	85	36	18	13	31	1.90
14959835--14960199	121	3.0	120	80	8	418	39	13	13	32	1.85
14960151--14960199	23	2.1	23	92	0	80	40	16	12	30	1.85
14960062--14960238	98	1.8	98	88	2	275	40	12	12	34	1.81
14967091--14967130	21	1.9	21	89	0	62	55	7	7	30	1.56
14970833--14970877	22	2.0	23	86	4	65	22	28	26	22	1.99
14973253--14973537	143	2.0	142	85	4	387	40	10	8	40	1.70
14988419--14988452	2	17.5	2	93	6	61	50	0	0	50	1.00
14988450--14988708	105	2.4	106	89	2	378	35	13	14	35	1.86
14991206--14991255	2	25.0	2	100	0	100	50	0	0	50	1.00
14994265--14994331	35	1.9	35	90	0	107	32	16	23	26	1.96
14994810--14995176	181	2.0	181	95	4	661	25	25	13	35	1.92
14996918--14997060	28	5.1	29	85	8	215	23	24	9	43	1.82
14996918--14997057	54	2.5	56	90	6	223	23	24	9	42	1.83
14997030--14997179	81	1.9	77	87	5	219	26	24	12	36	1.91
14997139--14997709	68	8.6	66	82	7	619	31	22	15	30	1.94
14997231--14997341	55	2.0	55	92	0	186	32	21	16	29	1.95
14997168--14997409	123	2.0	123	91	0	394	30	23	15	29	1.95
14997286--14997709	135	3.1	136	84	2	541	32	21	15	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14997286--14997709	203	2.1	204	86	0	591	32	21	15	30	1.94
14997947--14997980	17	2.0	17	100	0	68	23	17	17	41	1.90
15001470--15001518	20	2.5	20	86	0	62	32	14	6	46	1.69
15002681--15002718	10	3.7	10	92	3	58	86	0	7	5	0.69
15002681--15002718	11	3.5	11	89	7	51	86	0	7	5	0.69
15002697--15002735	14	2.7	15	84	11	55	74	0	10	15	1.07
15002802--15002890	11	8.5	10	67	13	54	66	0	4	29	1.11
15002802--15002890	21	4.2	21	80	8	83	66	0	4	29	1.11
15003045--15003093	25	2.0	25	87	0	71	61	0	4	34	1.15
15003494--15003592	37	2.8	36	86	4	128	31	14	15	39	1.87
15004336--15005595	104	12.0	106	88	2	1771	23	17	25	33	1.96
15006103--15006139	18	2.0	19	89	5	58	45	27	5	21	1.73
15006546--15006601	22	2.5	22	97	0	103	26	12	25	35	1.91
15007198--15007261	17	3.8	16	78	17	58	1	12	4	81	0.92
15007199--15007242	20	2.1	21	84	12	56	2	11	4	81	0.92
15007198--15007261	26	2.5	26	78	19	71	1	12	4	81	0.92
15007211--15007262	14	3.4	15	80	20	63	0	13	7	78	0.94
15007197--15007261	29	2.2	29	86	5	85	1	12	4	81	0.91
15007232--15007269	17	2.2	18	86	9	53	0	21	5	73	1.02
15011489--15011552	19	3.4	19	72	21	55	67	1	9	21	1.28
15011819--15011889	29	2.4	29	80	13	74	61	2	8	26	1.38
15011878--15011926	21	2.2	21	82	10	53	61	0	4	34	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15012377--15012469	37	2.5	37	84	3	107	32	12	12	41	1.81
15016042--15016200	79	2.0	79	91	0	255	27	19	23	28	1.98
15022982--15023043	31	2.0	31	93	0	106	30	8	11	50	1.67
15038499--15038557	29	2.0	30	87	9	86	42	3	18	35	1.67
15043667--15043700	2	17.0	2	100	0	68	50	0	0	50	1.00
15044476--15044519	20	2.2	20	87	4	61	59	6	0	34	1.24
15051997--15052226	112	2.1	111	85	2	300	37	17	15	29	1.91
15062819--15062865	23	2.0	24	83	8	60	44	10	6	38	1.65
15062884--15062912	15	1.9	15	100	0	58	41	17	0	41	1.49
15070532--15070563	16	2.0	16	93	0	55	21	18	9	50	1.75
15071410--15071439	10	3.0	10	95	0	51	33	0	36	30	1.58
15076938--15076978	20	2.0	21	90	9	66	39	4	19	36	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62

The End!