genome.fa.s9639.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15077257

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   

This is table  51  of  62  ( 7398 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11839669--11839726	13	4.7	12	76	21	57	1	15	3	79	0.95
11839673--11839728	19	2.8	20	84	10	71	1	14	5	78	1.00
11844901--11844952	22	2.4	22	96	0	95	19	19	25	36	1.95
11847146--11847190	20	2.3	20	88	3	65	37	4	6	51	1.49
11848129--11848164	16	2.3	15	90	4	54	25	5	30	38	1.78
11850877--11850919	22	2.0	22	100	0	86	20	18	27	32	1.96
11853854--11853882	13	2.3	13	94	5	51	13	17	0	68	1.20
11857834--11857876	15	3.0	15	86	10	63	18	13	0	67	1.23
11859588--11859630	22	2.0	22	95	0	77	20	18	25	34	1.96
11866487--11866529	15	3.0	15	86	10	63	18	13	0	67	1.23
11868481--11868522	16	2.5	17	76	7	50	0	16	4	78	0.91
11874809--11874871	28	2.3	27	83	5	74	7	15	14	61	1.54
11877298--11877335	16	2.4	16	95	0	67	47	0	28	23	1.52
11877298--11877341	16	2.9	15	90	6	54	47	0	29	22	1.51
11882782--11882810	10	2.9	10	100	0	58	31	20	10	37	1.86
11883403--11883447	17	2.6	19	83	16	55	64	0	17	17	1.29
11887677--11887730	6	8.8	6	77	18	58	0	16	1	81	0.78
11887678--11887729	5	9.8	5	86	14	61	0	17	1	80	0.80
11887678--11887727	21	2.3	22	89	3	75	0	18	2	80	0.82
11890619--11890658	15	2.7	14	85	11	53	57	0	25	17	1.40
11894924--11894980	27	2.1	27	93	0	96	57	12	17	12	1.64
11894965--11895006	13	3.3	13	81	15	52	78	0	16	4	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11909817--11909865	16	2.9	16	84	6	53	61	0	22	16	1.34
11910069--11910107	13	3.1	12	82	10	51	0	15	5	79	0.90
11910062--11910104	6	7.0	6	80	15	52	0	18	2	79	0.85
11910339--11910381	6	7.0	6	82	12	52	0	18	2	79	0.85
11910339--11910381	13	3.5	12	81	12	52	0	18	2	79	0.85
11909939--11910492	273	2.0	268	91	4	887	18	18	13	50	1.79
11911165--11911214	18	2.6	19	87	6	66	44	6	16	34	1.72
11919393--11919419	12	2.2	12	100	0	54	14	25	25	33	1.95
11930983--11931193	105	2.0	105	100	0	422	44	10	15	29	1.80
11956720--11956763	17	2.6	17	92	0	70	50	4	9	36	1.55
11969238--11969372	66	2.0	66	97	0	252	15	35	6	42	1.73
11974182--11974233	21	2.6	20	87	6	70	36	15	5	42	1.71
11974942--11974987	18	2.4	18	85	10	56	76	2	19	2	1.00
11978338--11978388	20	2.6	20	90	3	77	35	15	5	43	1.71
11982252--11982386	66	2.0	66	98	0	261	15	35	7	41	1.75
11992410--11992451	22	1.9	22	85	9	59	40	19	0	40	1.51
11993088--11993133	23	2.0	23	83	8	58	36	6	8	47	1.60
11997691--11997736	23	2.0	23	83	8	58	36	6	8	47	1.60
11999052--11999095	20	2.2	20	84	8	54	20	15	0	63	1.31
12004887--12004922	17	2.1	17	89	0	54	38	0	30	30	1.58
12005183--12005227	20	2.3	21	81	14	60	2	15	4	77	1.02
12007307--12007358	25	2.1	24	82	3	59	57	11	15	15	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12007348--12007383	14	2.5	14	90	4	54	80	0	19	0	0.71
12008568--12008610	23	1.9	21	81	13	50	32	18	11	37	1.87
12013935--12013986	25	2.1	25	85	3	70	57	15	13	13	1.65
12020236--12020399	90	1.8	89	96	1	301	37	11	6	45	1.66
12022633--12022681	21	2.3	21	96	0	89	34	4	28	32	1.76
12025823--12025912	45	2.0	45	82	0	108	24	13	17	44	1.85
12032928--12032953	12	2.2	12	100	0	52	42	0	34	23	1.54
12042287--12042317	12	2.5	13	94	5	55	16	16	0	67	1.23
12049262--12049295	12	2.9	12	95	4	61	0	17	5	76	0.98
12049286--12049338	24	2.2	24	86	3	72	11	15	13	60	1.59
12051662--12051795	13	11.3	11	73	22	103	28	2	37	31	1.72
12051645--12051795	36	4.2	36	92	2	252	28	3	37	31	1.73
12051645--12051795	71	2.1	71	97	0	284	28	3	37	31	1.73
12054353--12054402	24	2.0	25	92	3	84	60	14	14	12	1.60
12060401--12060445	21	2.2	20	84	11	56	37	6	17	37	1.76
12069556--12069859	45	6.8	45	93	1	495	30	22	7	39	1.81
12069964--12070045	40	2.0	40	95	0	146	34	25	15	24	1.95
12075059--12075324	67	4.0	67	90	1	408	29	14	26	29	1.95
12076707--12076750	22	2.0	22	95	0	79	34	40	2	22	1.67
12076799--12076845	23	2.0	23	84	8	60	23	14	0	61	1.33
12082180--12082231	21	2.4	23	81	12	65	26	25	19	28	1.98
12083132--12083459	164	2.0	164	97	0	620	33	25	9	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12088872--12088928	30	2.0	29	89	6	89	24	33	14	28	1.94
12092854--12092894	21	2.0	21	85	0	55	56	0	7	36	1.27
12094055--12094229	90	2.0	89	89	1	269	44	7	12	36	1.70
12097576--12097629	23	2.3	24	87	3	83	62	11	16	9	1.52
12102324--12102362	16	2.4	16	91	0	60	35	15	28	20	1.93
12109732--12109780	22	2.2	22	85	7	64	83	6	10	0	0.80
12109732--12109782	11	4.9	10	76	13	50	82	5	11	0	0.83
12111953--12111994	22	1.9	22	85	9	59	23	11	14	50	1.76
12115309--12115362	23	2.2	25	83	6	67	11	16	11	61	1.57
12117472--12117499	9	3.1	9	100	0	56	0	10	0	89	0.49
12119569--12119596	11	2.5	11	100	0	56	10	25	28	35	1.89
12121968--12122007	21	1.9	21	85	10	55	62	0	12	25	1.30
12125757--12125807	21	2.5	21	87	6	70	35	9	7	47	1.66
12127934--12128106	90	1.9	91	86	1	249	23	26	21	29	1.99
12134865--12134919	24	2.3	25	81	6	60	32	16	21	29	1.95
12147597--12147744	71	2.1	71	84	3	201	29	35	2	32	1.72
12147598--12147744	36	4.2	36	90	1	201	28	36	2	32	1.72
12147891--12147940	15	3.3	15	88	2	73	18	22	0	60	1.37
12149691--12149724	11	3.2	10	91	8	50	0	14	0	85	0.60
12149891--12149949	22	2.4	23	76	17	66	61	0	16	22	1.35
12152002--12152136	69	2.0	69	100	0	270	24	11	28	35	1.91
12155670--12155724	23	2.3	25	84	6	78	61	12	16	9	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12158051--12158088	19	2.0	19	100	0	76	36	21	10	31	1.87
12161543--12161622	35	2.2	37	88	4	119	28	3	36	31	1.75
12164946--12164990	14	2.9	15	80	12	56	4	15	6	73	1.21
12165437--12165516	35	2.2	35	86	4	115	28	3	36	31	1.75
12166713--12166803	47	2.0	46	89	10	145	42	15	14	27	1.85
12167443--12167492	19	2.6	20	84	12	61	64	0	12	24	1.27
12172953--12173002	19	2.6	20	84	12	61	64	0	12	24	1.27
12176222--12176254	16	2.1	16	100	0	66	33	18	6	42	1.75
12179520--12179551	15	2.1	16	94	5	57	31	18	6	43	1.75
12181863--12181902	21	1.9	21	85	10	55	62	0	17	20	1.33
12181925--12181965	22	1.9	21	90	5	64	26	2	36	34	1.70
12186099--12186150	24	2.2	24	85	0	68	30	19	21	28	1.97
12187415--12187469	24	2.3	24	70	14	60	7	14	10	67	1.41
12194890--12194940	19	2.6	19	75	3	57	3	11	3	80	0.98
12195669--12195719	19	2.6	20	87	3	68	45	5	15	33	1.71
12199506--12199555	20	2.5	20	87	3	66	38	12	6	44	1.66
12200282--12200327	18	2.4	18	85	10	56	76	2	19	2	1.00
12203679--12203729	20	2.6	20	90	3	77	35	15	5	43	1.71
12205434--12205501	11	5.7	11	75	21	66	83	10	5	0	0.79
12205436--12205501	10	6.7	10	76	10	73	84	9	6	0	0.76
12205437--12205502	19	3.4	19	91	2	96	83	9	7	0	0.82
12205447--12205519	20	3.7	19	85	5	83	78	12	9	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12205447--12205512	19	3.3	20	93	6	100	80	10	9	0	0.91
12216315--12216366	24	2.2	25	82	10	72	61	13	17	7	1.54
12216328--12216372	24	1.9	24	95	4	83	64	15	13	6	1.47
12223717--12223784	11	6.2	11	90	10	104	89	8	1	0	0.54
12223717--12223784	32	2.1	34	91	5	113	89	8	1	0	0.54
12223717--12223775	1	59.0	1	82	0	73	91	8	0	0	0.42
12223717--12223773	10	5.6	10	88	12	89	91	8	0	0	0.43
12223717--12223791	31	2.4	30	82	10	89	86	10	2	0	0.66
12233571--12233602	2	16.5	2	93	6	57	50	0	0	50	1.00
12241407--12241468	21	3.0	20	76	9	70	1	19	3	75	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62