genome.fa.s10.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold10
Parameters: 2 7 7 80 10 50 1000
Length:  3842500

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  12  of  25  ( 2970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1651965--1652027	32	2.0	32	96	0	117	36	15	12	34	1.86
1652085--1652141	21	2.7	21	97	0	105	36	19	10	33	1.86
1656354--1656384	15	2.1	15	93	0	53	48	16	22	12	1.80
1658465--1658490	13	2.0	13	100	0	52	30	15	15	38	1.88
1661021--1661071	19	2.6	19	87	3	66	41	17	15	25	1.89
1663552--1663592	21	2.0	21	90	4	66	19	12	17	51	1.76
1667120--1667178	31	1.9	31	89	0	91	32	30	23	13	1.93
1667161--1667325	87	1.9	87	87	0	240	30	18	23	27	1.97
1669960--1669985	13	2.0	13	100	0	52	30	15	15	38	1.88
1672060--1672102	20	2.1	21	91	4	70	9	27	46	16	1.77
1676454--1676498	22	2.1	21	84	8	56	22	15	6	55	1.63
1676443--1676498	21	2.7	21	75	13	62	23	14	7	55	1.63
1678714--1678739	13	2.0	13	100	0	52	30	15	15	38	1.88
1681865--1681988	61	2.0	61	84	6	162	39	12	25	23	1.89
1681947--1682250	52	6.0	49	76	7	216	33	15	25	25	1.95
1682054--1682250	101	2.0	101	83	4	254	32	16	25	25	1.96
1682259--1682390	43	3.1	43	82	2	167	31	15	24	28	1.96
1682402--1682551	32	4.8	31	80	4	167	20	18	30	31	1.96
1682426--1682547	63	1.9	63	85	3	165	17	19	31	31	1.95
1682382--1682547	32	5.3	31	78	3	152	20	18	30	30	1.96
1682731--1682800	28	2.6	27	82	11	81	25	18	30	25	1.98
1683234--1683300	28	2.4	28	85	5	82	28	14	22	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1685750--1685775	13	2.0	13	100	0	52	38	15	15	30	1.88
1685732--1685796	32	2.0	32	87	6	94	40	18	13	27	1.89
1691907--1691952	21	2.2	20	81	11	58	32	19	4	43	1.71
1693541--1693862	155	2.1	155	95	1	583	40	5	20	33	1.76
1703422--1703476	20	2.8	20	86	5	67	38	10	16	34	1.84
1706399--1706424	11	2.4	11	100	0	52	53	11	15	19	1.71
1712252--1712280	13	2.3	13	94	5	51	3	0	27	68	1.05
1717623--1717652	13	2.3	13	100	0	60	30	16	13	40	1.87
1717670--1717743	20	3.7	19	82	7	85	31	14	12	41	1.83
1720303--1720373	28	2.6	26	78	10	72	22	30	21	25	1.98
1720146--1720422	107	2.6	105	75	5	277	29	23	12	34	1.92
1720358--1720475	51	2.3	51	79	12	127	32	24	9	33	1.87
1720412--1720640	79	2.9	79	82	1	280	30	24	11	34	1.90
1722695--1722721	4	6.8	4	100	0	54	22	0	0	77	0.76
1733005--1733050	16	2.8	17	90	6	76	89	6	0	4	0.60
1733005--1733069	12	5.1	13	77	5	53	86	4	6	3	0.79
1734143--1734738	55	10.5	55	80	10	628	27	25	20	26	1.99
1734140--1734739	111	5.3	111	83	10	687	27	25	20	27	1.99
1734140--1734745	233	2.6	229	84	8	763	27	25	19	27	1.99
1734717--1734858	42	3.4	39	75	17	128	21	30	14	33	1.94
1734741--1734858	45	2.7	44	82	8	134	21	29	13	35	1.92
1735110--1735173	33	1.9	33	90	6	103	28	15	15	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1735127--1735212	13	7.1	13	67	32	66	29	17	13	39	1.88
1737687--1737923	107	2.2	106	81	5	273	28	20	15	35	1.93
1737863--1737982	51	2.4	51	84	8	163	30	23	11	34	1.90
1737957--1738008	28	1.9	28	84	7	72	26	26	17	28	1.97
1737914--1738134	79	2.8	79	90	0	343	28	24	14	32	1.94
1739447--1739484	20	2.0	20	94	5	69	36	15	10	36	1.82
1746135--1746159	13	1.9	13	100	0	50	36	16	16	32	1.90
1746115--1746179	33	2.0	33	87	0	94	33	12	13	40	1.82
1746222--1746249	13	2.2	13	100	0	56	28	14	17	39	1.89
1746255--1746379	52	2.4	52	93	0	205	36	19	17	26	1.94
1751297--1751350	19	2.8	19	83	10	74	33	16	14	35	1.90
1755309--1755341	15	2.2	15	94	0	57	45	9	6	39	1.61
1756476--1756506	13	2.4	13	94	0	53	87	12	0	0	0.55
1757348--1757401	2	27.0	2	88	7	83	48	1	0	50	1.11
1757348--1757425	24	3.6	21	83	13	79	44	7	1	46	1.40
1757815--1757885	22	3.3	22	80	9	83	53	0	0	46	1.00
1757839--1757914	16	4.8	16	73	9	57	55	2	0	42	1.14
1757797--1757897	37	2.7	36	72	18	89	52	0	0	46	1.07
1757927--1757979	16	3.3	16	75	0	52	60	11	0	28	1.31
1758715--1758744	2	15.0	2	100	0	60	50	0	0	50	1.00
1759511--1759556	22	2.0	22	87	4	65	52	8	6	32	1.58
1759808--1759920	55	2.1	55	98	0	217	31	26	11	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1760629--1760656	2	14.0	2	100	0	56	50	0	0	50	1.00
1761332--1761473	72	2.0	72	97	0	266	33	22	23	20	1.97
1767984--1768054	2	36.5	2	83	10	85	50	4	0	45	1.21
1768111--1768172	2	31.0	2	100	0	124	50	0	0	50	1.00
1768111--1768384	8	32.9	8	71	20	91	55	1	1	41	1.16
1768231--1768326	18	5.5	17	72	19	74	55	1	1	42	1.13
1768285--1768386	27	3.8	28	71	18	72	58	0	0	40	1.04
1768300--1768364	29	2.3	27	80	15	78	64	0	0	35	0.94
1768275--1768374	43	2.2	45	79	13	107	59	1	0	40	1.04
1769355--1769391	19	2.0	19	89	5	58	62	0	0	37	0.96
1769835--1769864	2	15.0	2	100	0	60	50	0	0	50	1.00
1770057--1770105	3	16.3	3	100	0	98	65	0	0	34	0.93
1770627--1770680	19	2.9	19	74	20	53	40	0	0	59	0.98
1771593--1771652	29	2.1	29	87	6	86	58	0	0	41	0.98
1771959--1772112	19	7.2	21	66	25	67	39	1	0	59	1.06
1771962--1772116	5	32.0	5	69	20	82	39	1	0	59	1.06
1772037--1772097	28	2.3	27	81	13	72	34	1	0	63	1.04
1771962--1772112	17	8.9	17	73	17	102	39	1	0	59	1.06
1771960--1772112	12	13.5	12	70	16	96	39	1	0	59	1.06
1772462--1772540	10	8.2	10	71	13	58	37	3	1	56	1.25
1772481--1772538	30	1.9	30	86	6	82	43	5	1	50	1.35
1772556--1772630	26	2.8	26	80	13	73	30	1	1	66	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1772842--1772880	20	2.0	20	85	5	53	48	0	2	48	1.15
1773101--1773131	2	15.5	2	100	0	62	51	0	0	48	1.00
1773273--1773343	22	3.3	21	74	18	67	39	0	0	60	0.97
1773231--1773362	44	3.0	45	78	15	141	41	1	0	56	1.08
1773282--1773354	19	3.8	20	76	10	71	43	0	0	56	0.99
1773253--1773392	28	4.9	27	69	18	79	37	1	0	60	1.11
1773273--1773392	20	6.1	20	69	14	70	38	0	0	60	1.02
1773483--1773529	16	2.9	16	81	12	60	42	0	0	57	0.98
1773482--1773532	19	2.5	21	84	12	70	41	0	0	58	0.98
1773495--1773535	20	2.0	20	86	9	57	48	0	0	51	1.00
1773479--1773917	240	1.8	243	80	5	541	34	4	5	54	1.46
1774028--1774069	12	3.3	13	81	15	52	45	0	0	54	0.99
1775161--1775202	3	14.0	3	100	0	84	33	0	0	66	0.92
1776663--1776708	24	1.9	24	86	8	67	54	2	0	43	1.12
1777170--1777226	28	2.0	28	83	12	73	47	3	0	49	1.18
1777416--1777454	12	3.2	12	85	3	51	53	0	0	46	1.00
1777427--1777479	21	2.5	22	77	17	67	49	0	0	50	1.00
1778271--1778305	2	17.5	2	100	0	70	0	48	0	51	1.00
1779063--1779087	6	4.2	6	100	0	50	36	0	32	32	1.58
1780856--1780935	39	2.1	39	87	0	115	42	13	21	22	1.88
1791503--1791568	19	3.5	20	76	14	61	46	0	0	53	1.00
1791543--1791587	22	2.0	22	91	8	74	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1793190--1793236	19	2.5	18	83	10	58	27	0	2	70	0.99
1794254--1794286	2	17.5	2	87	12	52	45	0	0	54	0.99
1796278--1796332	26	2.1	27	89	3	85	61	0	0	38	0.96
1796310--1796343	17	1.9	18	88	5	52	50	0	0	50	1.00
1796890--1796931	15	2.7	16	74	7	50	52	0	2	45	1.13
1796896--1797047	20	8.3	18	67	18	75	57	0	1	41	1.07
1796906--1796962	29	2.0	29	89	6	89	54	0	0	45	0.99
1796921--1797015	23	3.9	23	75	16	77	57	0	1	41	1.05
1796921--1797056	21	5.9	23	70	19	74	58	0	1	39	1.07
1797218--1797282	30	2.2	30	81	5	80	43	1	1	53	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25