genome.fa.s10.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold10
Parameters: 2 7 7 80 10 50 1000
Length:  3842500

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  20  of  25  ( 2970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3061999--3062025	2	13.5	2	100	0	54	51	0	0	48	1.00
3063548--3063605	21	2.7	22	84	7	75	41	0	0	58	0.98
3063563--3063605	22	2.0	21	90	4	68	46	0	0	53	1.00
3064381--3064418	2	19.0	2	100	0	76	50	0	0	50	1.00
3064587--3064613	2	13.5	2	100	0	54	51	0	0	48	1.00
3064613--3064653	2	20.5	2	100	0	82	51	0	48	0	1.00
3064863--3064922	29	2.1	28	82	11	70	45	0	0	55	0.99
3068344--3068421	20	3.9	19	78	6	75	39	12	12	34	1.82
3068344--3068421	40	2.0	39	84	2	102	39	12	12	34	1.82
3069909--3069949	20	2.0	20	100	0	82	14	24	19	41	1.89
3070646--3070687	14	2.8	15	78	10	50	38	0	2	59	1.10
3071222--3071286	29	2.3	29	75	17	73	40	13	3	43	1.60
3071350--3071423	29	2.6	28	81	12	87	48	4	9	37	1.55
3072284--3072316	16	2.1	16	88	11	50	54	3	0	42	1.15
3074210--3074286	20	3.8	20	79	6	75	33	10	11	44	1.75
3074309--3074346	20	1.9	20	100	0	76	39	10	13	36	1.79
3084516--3084594	24	3.3	24	78	5	72	44	0	1	54	1.08
3084977--3085025	19	2.6	19	83	3	55	48	0	2	48	1.12
3088101--3088318	34	6.5	34	86	1	278	25	7	26	40	1.81
3088101--3088320	67	3.3	67	86	1	305	25	7	26	40	1.81
3091433--3091473	18	2.3	18	80	19	50	65	2	2	29	1.18
3092365--3092405	2	20.5	2	84	0	55	46	2	4	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3095964--3096003	20	2.0	21	85	14	57	52	0	2	45	1.14
3097647--3097740	30	3.2	31	75	15	92	60	2	0	37	1.09
3097719--3097747	14	2.0	15	93	6	51	55	0	0	44	0.99
3097953--3098021	20	3.5	20	76	4	59	36	13	13	37	1.83
3098938--3098994	22	2.5	24	88	11	100	17	10	8	63	1.51
3098947--3099001	22	2.6	21	88	5	58	20	9	9	61	1.52
3105088--3105165	34	2.3	32	78	12	77	71	11	12	3	1.26
3105331--3105728	198	2.0	197	99	0	778	40	20	13	24	1.89
3106680--3107389	27	26.0	27	92	1	1134	23	34	14	27	1.93
3107372--3108248	32	27.6	32	95	1	1487	31	35	18	14	1.91
3108784--3108834	20	2.5	20	87	0	66	37	11	11	39	1.79
3109769--3109825	22	2.5	24	88	11	100	17	10	8	63	1.51
3109778--3109832	22	2.6	21	88	5	58	20	9	9	61	1.52
3112570--3112609	16	2.5	16	91	0	62	60	0	2	37	1.11
3113264--3113288	8	3.1	8	100	0	50	52	0	0	48	1.00
3114074--3114110	19	1.9	19	94	0	65	37	8	2	51	1.46
3114591--3114646	27	2.1	27	83	6	69	44	1	0	53	1.11
3114821--3114947	64	2.0	66	81	6	152	58	9	1	30	1.39
3114853--3114947	32	2.9	32	93	3	154	58	9	1	30	1.36
3114863--3114947	17	5.2	16	72	10	75	56	10	0	32	1.34
3115187--3115232	22	2.1	22	84	4	58	47	4	8	39	1.54
3118344--3118414	37	1.9	37	100	0	142	28	5	39	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3120407--3120461	20	2.8	19	88	5	74	41	16	12	29	1.85
3120513--3120564	19	2.7	20	84	6	70	40	17	13	28	1.87
3120599--3120642	20	2.1	22	91	8	74	40	20	9	29	1.83
3125742--3125780	13	3.0	13	96	0	69	30	17	15	35	1.91
3128193--3128247	20	2.8	19	88	5	74	41	16	12	29	1.85
3128318--3128343	13	2.0	13	100	0	52	38	15	15	30	1.88
3128300--3128363	32	2.0	33	87	3	94	40	17	14	28	1.88
3131413--3131662	34	7.4	34	89	1	351	25	8	26	40	1.83
3131970--3132032	19	3.3	19	90	0	90	28	17	19	34	1.94
3136098--3136349	34	7.5	34	90	1	355	25	7	26	40	1.83
3136750--3136783	17	2.1	15	89	10	50	20	0	5	73	1.04
3140837--3140949	37	3.1	37	97	0	208	28	7	38	24	1.83
3142777--3142836	30	2.0	29	87	9	86	31	11	3	53	1.53
3144950--3145017	19	3.7	17	76	16	64	63	1	1	33	1.13
3145012--3145057	16	2.8	17	73	26	53	60	2	0	36	1.09
3145037--3145111	27	2.7	28	74	12	82	64	1	1	33	1.11
3156660--3156709	24	2.1	24	85	10	68	44	2	0	54	1.11
3156688--3156738	17	2.8	17	85	8	66	39	0	0	60	0.97
3156698--3156770	22	3.0	23	71	18	60	34	0	0	65	0.93
3157175--3157232	20	2.9	20	87	5	73	39	0	0	60	0.97
3157159--3157244	44	2.0	43	82	15	106	36	0	0	63	0.94
3157173--3157285	34	3.4	33	72	16	90	33	0	0	65	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3157941--3157992	11	5.0	11	77	11	56	28	0	1	69	0.99
3157932--3158010	27	2.9	28	75	17	85	32	1	1	64	1.09
3157942--3158002	19	3.0	22	72	16	67	27	0	1	70	0.97
3157948--3158000	17	3.0	17	76	15	54	26	0	1	71	0.96
3158287--3158323	19	1.9	19	89	10	58	35	0	0	64	0.94
3158892--3158961	28	2.5	28	71	13	72	52	0	0	47	1.00
3158905--3158962	28	2.0	29	83	6	73	56	0	0	43	0.99
3168819--3168968	37	4.1	36	84	5	183	30	8	34	27	1.85
3172181--3172239	31	1.9	31	100	0	118	25	6	13	54	1.64
3175769--3175809	16	2.5	17	84	4	57	34	0	0	65	0.93
3176582--3176629	2	24.0	2	86	0	69	45	2	50	2	1.25
3177361--3177404	2	22.0	2	100	0	88	50	0	0	50	1.00
3179052--3179169	55	2.1	54	84	9	150	45	0	0	53	1.06
3179809--3179859	25	2.2	25	86	10	72	35	3	0	60	1.15
3180066--3180091	13	2.0	13	100	0	52	61	7	0	30	1.24
3180103--3180160	21	2.9	21	76	5	57	60	0	0	39	0.97
3180103--3180158	20	2.8	20	76	7	60	60	0	0	39	0.97
3181787--3181861	2	37.5	2	89	0	114	44	0	5	50	1.24
3182570--3182608	17	2.2	18	86	13	55	23	0	0	76	0.78
3183764--3183804	13	3.2	13	89	0	55	58	0	0	41	0.98
3185984--3186023	17	2.3	18	86	4	55	52	2	7	37	1.43
3188663--3188717	2	27.5	2	84	0	65	41	0	7	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3188666--3188717	16	3.2	16	88	0	77	40	0	7	51	1.30
3188663--3188717	18	3.2	18	84	7	78	41	0	7	50	1.30
3189588--3189612	6	4.2	6	100	0	50	16	0	0	84	0.63
3190666--3190704	2	19.5	2	100	0	78	48	0	0	51	1.00
3192596--3192633	10	4.1	9	86	10	51	42	2	0	55	1.14
3193175--3193261	41	2.1	41	81	10	97	67	4	2	25	1.21
3193693--3193726	17	2.1	17	89	10	54	50	5	0	44	1.26
3193857--3193907	23	2.2	24	85	3	68	45	0	0	54	0.99
3193935--3193961	9	3.0	9	100	0	54	77	0	11	11	0.99
3195226--3195279	20	2.8	20	71	23	51	51	0	0	48	1.00
3195226--3195302	39	2.0	38	80	19	88	55	0	0	44	0.99
3195455--3195500	5	9.4	5	79	11	51	41	2	0	56	1.11
3195461--3195499	9	4.2	9	83	6	51	43	2	0	53	1.14
3195823--3195879	23	2.4	25	77	16	68	57	0	1	40	1.09
3196919--3196952	2	17.0	2	100	0	68	0	50	0	50	1.00
3197440--3197492	28	1.9	28	84	3	72	37	11	0	50	1.38
3197471--3197519	23	2.1	23	88	3	71	48	10	0	40	1.37
3200422--3200448	4	6.8	4	100	0	54	22	0	0	77	0.76
3200704--3200731	2	14.0	2	100	0	56	50	0	0	50	1.00
3201746--3201780	5	6.6	5	96	3	52	77	0	5	17	0.96
3202421--3202463	22	2.0	21	90	4	68	41	4	0	53	1.21
3202421--3202463	21	2.0	22	86	13	63	41	4	0	53	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3204737--3204763	13	2.1	13	100	0	54	22	0	18	59	1.38
3208988--3209015	14	2.0	14	100	0	56	14	21	35	28	1.92
3210226--3210336	37	3.1	37	90	2	172	26	9	38	26	1.85
3211958--3212033	37	2.1	36	81	16	86	52	3	0	43	1.19
3212317--3212351	17	2.1	17	89	10	54	37	2	0	60	1.12
3214299--3214365	19	3.6	17	73	23	55	64	1	1	32	1.12
3214300--3214371	38	1.9	37	83	8	92	63	1	1	33	1.11
3214330--3214455	49	2.6	48	76	13	121	59	3	0	36	1.16
3226007--3226087	12	6.6	12	76	13	51	35	1	0	62	1.03
3226499--3226559	16	3.3	19	77	15	58	37	0	0	62	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25