genome.fa.s10.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold10
Parameters: 2 7 7 80 10 50 1000
Length:  3842500

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  4  of  25  ( 2970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451912--451937	13	2.0	13	100	0	52	30	15	15	38	1.88
457981--458011	15	2.1	15	93	0	53	48	16	22	12	1.80
460092--460129	13	2.9	13	96	0	67	34	18	15	31	1.92
467228--469131	951	2.0	951	96	0	3495	26	18	19	34	1.96
472383--472435	13	4.5	13	71	26	55	39	15	15	30	1.87
472481--472506	13	2.0	13	100	0	52	30	15	15	38	1.88
472491--472541	20	2.5	20	100	0	102	25	13	15	45	1.83
477179--477249	28	2.6	27	86	8	90	28	19	28	23	1.99
476897--477221	79	4.1	79	79	8	311	34	16	23	26	1.95
477240--477351	51	2.2	51	86	0	152	33	14	23	28	1.94
477370--477477	51	2.1	51	84	3	137	37	12	21	29	1.89
477204--477477	130	2.1	130	84	5	349	34	12	24	28	1.92
479795--479868	20	3.7	19	85	7	94	43	13	14	28	1.84
480765--480803	20	2.0	20	84	0	51	53	5	12	28	1.60
481453--481570	51	2.3	51	82	2	139	32	28	9	29	1.88
481582--481701	51	2.4	51	92	2	197	26	25	15	31	1.96
481523--481908	130	3.0	129	86	2	522	27	25	12	34	1.93
481635--481780	79	1.8	79	91	2	240	26	26	14	32	1.94
481714--481830	51	2.3	51	86	2	155	26	27	14	31	1.95
481762--481936	79	2.2	79	80	4	201	26	25	15	33	1.95
481784--481981	79	2.5	80	81	8	233	28	21	13	37	1.91
488132--488894	61	12.5	61	84	3	930	25	27	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488132--488887	182	4.1	182	86	3	1018	25	27	19	27	1.99
488870--489166	87	3.4	85	83	7	350	20	26	12	39	1.89
488870--489191	43	7.4	43	81	7	357	21	26	13	38	1.90
489847--489876	13	2.3	13	94	0	51	33	16	10	40	1.82
489892--489965	20	3.7	19	91	7	112	28	16	12	43	1.83
492362--492439	28	2.7	29	86	5	106	26	32	16	24	1.96
492425--492540	51	2.3	51	90	0	187	30	30	11	28	1.91
492495--492699	79	2.6	79	77	12	195	28	23	12	35	1.91
494372--494406	4	8.8	4	93	0	61	74	2	0	22	0.95
494363--494406	12	3.5	12	90	6	61	75	4	0	20	0.98
496541--496611	28	2.5	28	82	8	90	29	15	28	26	1.96
496466--496690	106	2.1	106	78	0	252	34	14	23	28	1.94
496579--497439	80	10.9	79	77	9	632	35	12	23	27	1.92
496569--497439	238	3.7	235	80	7	868	35	12	24	27	1.92
496579--497439	79	10.9	79	78	5	668	35	12	23	27	1.92
497889--497924	9	3.9	9	85	7	54	72	11	0	16	1.12
497880--497924	19	2.3	20	92	3	74	73	8	0	17	1.08
501297--501361	10	6.1	10	74	15	51	49	0	0	50	1.00
501297--501361	29	2.5	24	85	14	76	49	0	0	50	1.00
501309--501359	12	4.1	12	75	25	52	49	0	0	50	1.00
501390--501441	25	2.0	26	85	3	70	48	0	3	48	1.20
501614--501685	33	2.2	32	82	7	83	50	29	11	9	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501882--501925	22	2.0	22	90	0	70	50	9	4	36	1.55
502814--502892	31	2.5	32	78	13	85	59	3	2	34	1.29
502989--503059	16	4.5	16	85	1	81	43	26	18	11	1.83
502989--503077	32	2.8	32	81	1	99	43	25	17	12	1.84
503018--503075	16	3.6	16	88	0	62	41	27	18	12	1.86
503212--503288	17	4.2	20	69	22	62	48	2	1	48	1.23
503212--503288	2	42.0	2	72	21	62	48	2	1	48	1.23
503677--503830	34	4.4	34	76	11	118	33	24	9	32	1.87
503697--503833	68	2.0	69	88	1	204	30	26	8	34	1.87
503697--503832	34	4.0	34	84	2	166	30	25	8	34	1.87
504260--504318	20	2.9	20	89	2	91	42	15	10	32	1.80
505363--505425	32	2.0	31	81	12	74	49	12	11	26	1.74
508505--509451	474	2.0	474	94	0	1671	34	16	16	32	1.92
517307--517359	10	5.0	11	80	15	58	39	1	26	32	1.67
519660--519716	21	2.8	21	86	2	80	36	14	15	33	1.88
519775--519823	19	2.6	19	93	0	80	36	18	14	30	1.90
520221--520262	9	4.7	9	80	11	50	35	14	21	28	1.92
521434--521519	34	2.5	34	86	5	120	29	24	9	37	1.86
526811--526851	2	20.5	2	100	0	82	0	48	0	51	1.00
535668--535826	89	1.8	85	83	5	210	32	3	12	50	1.58
535854--535921	29	2.3	29	85	10	84	32	4	13	50	1.61
536838--536892	26	2.2	26	87	9	78	40	9	0	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537124--537169	2	23.0	2	95	0	83	50	2	0	47	1.13
539702--539739	17	2.4	17	91	8	62	42	2	0	55	1.14
540157--540223	33	2.0	33	88	0	98	34	11	13	40	1.81
540177--540201	13	1.9	13	100	0	50	36	16	16	32	1.90
540264--540288	13	1.9	13	100	0	50	32	16	16	36	1.90
540297--540420	52	2.4	52	94	1	214	35	18	17	28	1.94
544554--544580	10	2.7	10	100	0	54	0	0	22	77	0.76
554276--554377	1	102.0	1	94	0	177	97	2	0	0	0.19
586893--586918	13	2.0	13	100	0	52	30	15	15	38	1.88
586873--586936	33	2.0	33	90	3	103	26	14	17	42	1.87
588560--588593	8	4.2	8	100	0	68	14	0	23	61	1.33
588939--588979	22	2.0	20	86	13	57	31	21	4	41	1.74
589241--589282	20	2.0	21	90	4	68	19	47	28	4	1.69
590664--590708	22	2.0	22	87	8	65	35	2	28	33	1.70
591221--591273	20	2.7	19	83	13	63	37	16	16	28	1.91
591263--591287	13	1.9	13	100	0	50	32	16	16	36	1.90
591275--591327	20	2.6	21	84	3	72	39	15	16	28	1.89
593218--593279	31	2.0	32	87	3	90	54	16	9	19	1.68
594085--594143	29	2.0	29	83	0	73	44	0	6	49	1.29
598733--598791	32	1.9	30	83	13	75	59	10	10	20	1.58
599071--599096	13	2.0	13	100	0	52	30	15	15	38	1.88
599051--599114	32	2.0	33	87	3	94	28	14	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600807--600863	23	2.4	23	82	8	62	38	3	0	57	1.16
610932--611179	125	2.0	126	89	2	383	27	16	12	44	1.83
611923--611971	17	2.9	18	79	14	59	55	0	0	44	0.99
612516--612541	4	6.5	4	100	0	52	23	0	0	76	0.78
614183--614238	21	2.7	21	74	0	58	28	0	5	66	1.14
615846--615897	23	2.4	22	83	6	61	48	5	17	28	1.70
616798--616855	27	2.2	27	90	3	91	39	3	10	46	1.55
619798--619839	2	21.0	2	100	0	84	50	0	0	50	1.00
621041--621108	24	3.1	22	71	19	61	42	1	0	55	1.08
621340--621385	19	2.5	20	82	13	62	58	0	0	41	0.98
622102--622150	26	2.0	24	88	8	71	63	0	0	36	0.95
622102--622150	21	2.3	21	86	6	64	63	0	0	36	0.95
622218--622249	13	2.4	14	90	10	50	34	0	0	65	0.93
622226--622264	19	2.1	19	85	9	53	38	0	0	61	0.96
622490--622528	21	1.9	20	84	5	51	35	0	0	64	0.94
623458--623485	2	14.0	2	100	0	56	0	50	0	50	1.00
624648--624703	18	3.2	17	74	20	53	67	0	0	32	0.91
624659--624691	17	2.0	17	94	5	59	72	0	0	27	0.85
624640--624868	8	25.6	8	66	23	54	63	2	0	33	1.11
624763--624869	39	2.7	39	77	14	114	67	0	0	31	0.97
624831--624868	15	2.4	17	87	12	55	71	0	0	28	0.87
625196--625270	24	2.9	25	78	13	73	0	40	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625419--625483	22	3.0	22	76	13	73	21	4	1	72	1.11
627882--627925	21	2.1	21	86	0	61	50	4	0	45	1.22
628225--628261	13	3.0	13	88	7	51	16	0	70	13	1.17
630483--630520	20	1.9	20	84	10	51	63	10	2	23	1.39
633580--633627	20	2.4	20	92	0	78	41	14	8	35	1.76
634664--634885	79	2.8	79	85	3	304	35	12	22	29	1.91
634679--635087	210	2.0	209	82	3	509	35	12	23	29	1.91
634892--635184	78	3.7	78	77	3	293	33	11	26	28	1.91
637547--637620	30	2.5	30	93	0	121	39	16	17	27	1.91
638210--638408	62	3.2	61	84	4	256	29	17	24	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25