genome.fa.s10.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold10
Parameters: 2 7 7 80 10 50 1000
Length:  3842500

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  25  of  25  ( 2970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3748753--3748791	14	2.8	14	84	11	53	61	0	0	38	0.96
3748744--3748885	32	4.5	33	77	12	113	59	0	0	39	1.02
3748738--3748857	32	3.7	33	79	10	115	60	0	1	38	1.07
3751822--3751854	15	2.2	15	100	0	66	57	0	21	21	1.41
3754961--3755094	10	13.7	10	71	18	63	34	0	1	63	1.09
3754973--3755042	18	3.9	18	73	12	54	40	0	2	57	1.14
3755036--3755091	21	2.7	21	81	10	78	30	0	0	69	0.89
3755758--3755783	9	2.9	9	100	0	52	57	0	0	42	0.98
3758400--3758486	33	2.7	32	78	8	86	59	1	0	39	1.05
3758433--3758501	17	4.2	16	74	18	61	55	1	0	43	1.08
3759180--3759209	15	2.0	15	93	0	51	66	3	0	30	1.07
3760172--3760247	23	3.2	24	77	9	84	43	1	3	51	1.28
3760242--3760283	20	2.1	20	82	8	50	35	2	0	61	1.09
3760172--3760276	47	2.2	47	80	11	115	41	1	2	53	1.26
3760577--3760623	3	15.3	3	86	4	67	29	4	2	63	1.25
3760770--3760823	26	2.2	24	81	18	60	55	0	0	44	0.99
3764518--3764562	16	2.8	17	77	16	51	44	0	2	53	1.13
3764526--3764582	24	2.3	24	85	11	71	40	0	3	56	1.17
3764510--3764605	25	3.7	25	69	13	68	38	0	2	59	1.09
3764758--3764818	17	3.2	21	68	27	55	39	3	1	55	1.26
3765347--3765375	2	15.0	2	92	7	51	51	0	0	48	1.00
3766833--3766910	25	3.0	24	71	15	66	35	0	1	62	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3766817--3766893	33	2.3	32	82	8	84	38	0	1	59	1.06
3767132--3767181	23	2.2	23	82	7	57	50	2	0	48	1.12
3767183--3767249	13	4.9	15	71	20	58	61	0	1	37	1.05
3767183--3767256	27	2.8	26	86	10	96	60	0	1	37	1.05
3769315--3769346	2	16.0	2	100	0	64	50	0	0	50	1.00
3769900--3769942	12	3.3	12	90	9	59	20	2	2	74	1.04
3774880--3774973	38	2.5	38	92	0	161	31	23	19	25	1.98
3775415--3775452	2	19.5	2	94	5	69	50	0	0	50	1.00
3775969--3776024	25	2.3	23	84	6	67	55	1	5	37	1.33
3776009--3776089	29	2.8	29	83	11	94	40	2	3	53	1.32
3776304--3776348	12	4.0	12	81	18	53	57	0	0	42	0.98
3776324--3776410	31	2.9	29	76	15	79	56	1	1	41	1.14
3776317--3776404	32	2.6	35	76	22	89	56	1	1	40	1.14
3777105--3777131	2	13.5	2	100	0	54	0	48	0	51	1.00
3777131--3777156	2	13.0	2	100	0	52	50	0	0	50	1.00
3780602--3780636	2	17.5	2	100	0	70	51	0	0	48	1.00
3781120--3781181	16	3.9	15	73	10	52	61	0	0	38	0.96
3781131--3781174	13	3.5	13	76	17	56	59	0	0	40	0.98
3781397--3781436	12	3.3	12	83	13	55	32	2	0	65	1.06
3781385--3781436	24	2.2	24	85	0	68	34	3	1	59	1.27
3781391--3781439	24	2.0	24	92	0	80	36	2	0	61	1.08
3790317--3790356	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3795382--3795414	16	2.0	17	88	5	50	33	0	0	66	0.92
3798996--3799029	2	17.0	2	100	0	68	50	0	0	50	1.00
3801519--3801556	2	19.0	2	94	0	58	50	5	0	44	1.24
3801775--3801818	22	2.1	20	83	8	52	45	2	6	45	1.42
3802174--3802210	2	18.5	2	94	0	65	48	2	0	48	1.15
3806085--3806127	19	2.3	19	83	0	50	46	4	0	48	1.22
3806571--3806613	15	2.8	15	80	13	52	37	0	0	62	0.95
3806860--3806915	19	2.9	19	74	10	60	44	0	0	55	0.99
3806876--3806923	15	3.1	16	79	8	55	45	0	0	54	0.99
3807810--3807844	17	2.1	16	89	5	52	40	0	2	57	1.14
3807828--3807901	30	2.4	29	82	8	85	52	0	2	44	1.15
3808141--3808306	83	2.0	84	87	1	244	23	37	7	30	1.83
3809252--3809293	18	2.3	18	91	0	66	21	7	9	61	1.50
3809292--3809323	16	2.0	16	93	0	55	43	15	6	34	1.72
3810379--3810529	76	2.0	76	85	5	207	39	3	3	52	1.39
3810803--3810844	14	2.9	14	83	13	50	45	0	2	52	1.13
3810935--3811007	21	3.4	22	73	5	69	49	2	1	46	1.24
3811436--3811474	19	2.1	18	85	4	51	28	0	0	71	0.86
3816621--3816674	26	2.1	25	82	3	63	62	0	3	33	1.12
3816661--3816700	19	2.2	19	86	13	57	57	2	5	35	1.34
3817905--3817936	16	2.0	16	93	0	55	12	3	6	78	1.06
3820573--3820608	18	2.0	18	94	0	63	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3821702--3821795	30	3.1	28	83	11	116	43	4	0	52	1.21
3822566--3822624	32	1.9	29	83	10	73	40	0	5	54	1.23
3822671--3823047	189	2.0	190	93	3	643	46	5	4	43	1.47
3823167--3823220	27	2.0	27	85	3	74	33	1	1	62	1.16
3823499--3823582	22	4.0	21	74	20	77	38	0	1	60	1.04
3825807--3825901	18	5.2	17	72	22	59	37	1	0	61	1.03
3825879--3825955	31	2.6	28	77	18	75	38	1	0	59	1.06
3829167--3829228	25	2.5	26	81	7	74	46	0	4	48	1.23
3831324--3831371	21	2.4	20	83	10	62	31	0	0	68	0.90
3831312--3831370	28	2.1	29	87	9	86	30	1	0	67	1.00
3832031--3832077	21	2.2	21	85	7	60	48	0	0	51	1.00
3832054--3832119	20	3.8	18	70	25	61	54	0	0	45	0.99
3832758--3832888	65	2.0	65	81	11	153	56	4	0	38	1.20
3833678--3833770	28	3.4	25	72	18	71	39	2	0	58	1.10
3833673--3833754	27	3.1	26	75	13	78	37	2	0	59	1.11
3833763--3833801	13	3.1	13	85	3	53	58	0	0	41	0.98
3837874--3837912	3	13.0	3	100	0	78	66	0	0	33	0.92
3840057--3840217	12	13.9	11	66	23	55	61	0	0	37	1.01
3840052--3840104	19	2.8	19	82	8	72	67	0	0	32	0.91
3840109--3840154	14	3.0	14	77	22	56	56	0	0	43	0.99
3840081--3840224	27	5.1	31	69	24	97	59	0	0	39	1.02
3840065--3840206	60	2.3	60	77	12	155	60	0	0	38	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3840250--3840281	16	2.0	16	93	0	55	81	3	15	0	0.82
3840727--3840780	23	2.4	23	81	9	58	64	3	0	31	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25

The End!