genome.fa.s10.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold10
Parameters: 2 7 7 80 10 50 1000
Length:  3842500

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  3  of  25  ( 2970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280955--281022	33	2.1	32	91	8	111	32	16	16	35	1.91
281090--281114	13	1.9	13	100	0	50	36	16	16	32	1.90
281073--281135	33	1.9	32	87	3	90	30	15	20	33	1.94
283645--283699	20	2.8	20	94	0	92	36	12	12	38	1.82
288067--288097	13	2.4	13	94	0	53	35	12	16	35	1.87
288047--288113	33	2.0	33	88	0	98	34	16	11	37	1.85
288142--288195	19	2.7	20	82	5	65	35	18	12	33	1.89
288183--288209	13	2.1	13	100	0	54	40	14	14	29	1.86
288748--288781	16	2.1	17	89	10	54	29	35	0	35	1.58
297100--297125	13	2.0	13	100	0	52	30	15	15	38	1.88
297661--297724	20	3.1	21	86	8	87	25	32	4	37	1.77
299527--299551	13	1.9	13	100	0	50	36	16	16	32	1.90
303432--303476	21	2.1	21	84	8	56	22	20	4	53	1.63
305660--305685	13	2.0	13	100	0	52	30	15	15	38	1.88
306594--306649	19	2.8	21	81	10	71	35	17	12	33	1.88
309451--309514	33	2.0	32	90	9	103	31	12	17	39	1.87
318860--318884	13	1.9	13	100	0	50	64	8	8	20	1.46
321594--321644	22	2.4	21	81	15	61	47	0	0	52	1.00
321598--321657	26	2.3	27	83	11	81	50	0	0	50	1.00
324438--324473	12	3.0	12	91	0	54	27	8	36	27	1.86
326523--326561	2	19.5	2	94	0	69	48	2	0	48	1.15
327039--327074	16	2.2	16	90	0	54	66	13	0	19	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334600--334650	20	2.6	20	90	3	77	39	17	13	29	1.88
340577--340608	8	4.0	8	91	0	55	15	0	21	62	1.32
340812--340837	13	2.0	13	100	0	52	30	15	15	38	1.88
343327--343394	33	2.1	32	86	2	91	33	16	16	33	1.91
346874--346909	18	2.0	18	94	0	63	33	16	19	30	1.94
349607--349658	20	2.6	20	84	0	68	32	19	9	38	1.84
350753--350804	14	3.6	14	70	14	52	48	19	5	26	1.71
350612--350976	188	1.9	188	100	0	730	47	15	10	26	1.77
352647--352686	20	2.0	21	90	5	64	40	10	5	45	1.60
354782--354857	12	6.9	11	75	15	52	39	2	48	9	1.49
354781--354866	24	3.8	24	72	17	85	41	2	45	10	1.51
354772--354890	42	2.8	42	92	0	193	42	2	46	8	1.47
365351--365405	20	2.8	20	88	0	74	34	14	10	40	1.81
365894--365931	20	1.9	20	88	0	58	50	23	0	26	1.50
373731--373764	16	2.1	16	94	0	59	55	0	20	23	1.43
377169--377194	13	2.0	13	100	0	52	38	15	15	30	1.88
377147--377214	33	2.1	32	91	2	109	35	13	16	35	1.87
380918--380976	26	2.3	26	87	0	91	30	6	18	44	1.76
383017--383063	24	2.0	24	87	4	69	34	2	6	57	1.36
383447--383511	19	3.4	18	78	14	69	32	3	1	63	1.19
383447--383519	37	2.0	36	81	10	85	32	4	1	61	1.23
384401--384442	22	2.0	22	85	4	59	59	9	4	26	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384623--384677	16	3.6	16	82	4	69	63	9	0	27	1.24
385685--385745	23	2.8	21	76	9	59	40	0	0	59	0.98
388466--388518	22	2.5	22	82	11	65	62	0	0	37	0.96
388452--388516	29	2.3	29	81	7	71	56	0	0	43	0.99
389483--389512	9	3.2	9	95	4	51	56	0	0	43	0.99
391225--391249	2	12.5	2	100	0	50	52	0	48	0	1.00
394257--394313	28	2.0	29	90	6	91	35	1	3	59	1.25
394663--394704	15	2.7	15	82	13	50	45	0	0	54	0.99
397593--397620	14	2.0	14	100	0	56	35	0	0	64	0.94
398827--398873	10	4.8	10	89	5	78	61	0	2	36	1.08
399254--399303	9	4.8	11	75	20	54	32	0	2	66	1.03
399265--399322	25	2.3	25	80	11	66	39	0	1	58	1.08
399990--400022	8	4.1	8	88	11	50	75	0	0	24	0.80
400169--400193	12	2.1	12	100	0	50	32	0	0	68	0.90
400372--400416	22	2.0	22	83	8	56	55	0	0	44	0.99
400547--400573	14	1.9	14	100	0	54	55	0	0	44	0.99
400834--400893	23	3.1	19	70	25	54	55	0	0	45	0.99
400835--400880	23	2.1	21	88	8	65	58	0	0	41	0.98
400898--400960	20	3.3	19	72	10	58	52	0	1	46	1.10
400999--401031	14	2.4	14	90	10	50	27	0	0	72	0.85
401519--401578	25	2.4	27	73	18	67	38	0	1	60	1.07
401525--401630	36	3.1	35	74	16	116	43	0	0	55	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401569--401764	30	6.6	30	68	20	94	43	2	0	53	1.14
401678--401757	35	2.6	29	73	21	79	41	2	0	56	1.13
401538--401630	30	2.8	35	74	18	90	44	0	1	54	1.07
403991--404051	24	2.5	24	75	15	63	27	4	1	65	1.22
404482--404530	22	2.2	22	100	0	98	42	18	8	30	1.79
406815--406870	14	3.9	15	76	6	62	21	1	23	53	1.55
409054--409449	183	2.1	186	81	3	467	45	12	9	32	1.74
410261--410288	13	2.2	13	100	0	56	28	14	17	39	1.89
410241--410306	33	2.0	33	88	5	98	30	15	13	40	1.85
418615--418685	32	2.4	28	86	9	79	26	25	15	32	1.95
418674--418875	34	6.1	34	76	12	152	18	29	14	37	1.90
418735--419030	61	4.5	68	78	11	211	19	31	13	35	1.91
418753--418902	34	4.4	34	79	12	128	18	28	14	38	1.90
418870--418927	27	2.1	27	83	0	71	24	31	12	32	1.91
418735--419030	33	9.0	33	75	12	173	19	31	13	35	1.91
419125--419420	87	3.4	87	90	0	459	27	27	18	27	1.98
419256--419908	126	5.0	126	78	12	649	26	26	19	27	1.99
419382--419957	87	6.4	87	90	3	828	26	26	19	28	1.99
419120--419908	174	4.5	174	82	10	716	26	26	18	28	1.98
419169--419633	213	2.2	213	93	0	779	27	27	19	26	1.99
419560--419805	39	5.8	39	72	16	168	27	26	18	27	1.98
419125--419720	300	2.0	300	92	0	1005	26	26	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419769--420104	52	6.7	49	80	7	345	23	25	17	32	1.97
419769--420104	101	3.3	101	86	1	444	23	25	17	32	1.97
420896--420959	19	3.7	19	72	23	68	32	12	18	35	1.89
420916--420940	13	1.9	13	100	0	50	36	16	16	32	1.90
420897--420972	32	2.4	32	93	0	125	32	14	18	34	1.91
420991--421056	33	2.0	33	85	5	89	30	15	15	39	1.88
421887--421912	9	2.9	9	100	0	52	23	0	23	53	1.46
424274--424298	13	1.9	13	100	0	50	32	16	16	36	1.90
424253--424316	33	2.0	32	87	9	94	29	15	15	39	1.89
425305--425487	90	2.0	90	94	2	323	33	17	13	35	1.88
426057--426090	16	2.2	16	90	10	54	47	0	2	50	1.16
426082--426111	15	2.0	15	93	0	51	70	0	10	20	1.16
426676--427109	38	11.7	37	69	21	200	53	3	2	39	1.33
426785--426837	22	2.4	21	72	9	52	47	0	1	50	1.12
426646--426956	114	2.8	116	71	19	309	53	2	4	39	1.36
426924--426988	28	2.4	27	87	7	105	55	4	3	36	1.36
426646--426966	112	2.8	112	70	22	303	53	2	4	38	1.36
426960--427100	74	1.9	75	81	11	173	53	4	2	40	1.32
433018--433085	36	1.9	36	90	3	111	26	26	13	33	1.93
433597--433659	13	5.2	13	70	29	59	39	14	15	30	1.87
433597--433677	33	2.5	33	91	4	128	39	13	16	30	1.87
434259--434297	20	2.0	20	89	0	60	48	23	7	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434574--434617	21	2.1	21	88	12	65	0	13	13	72	1.12
434727--434773	19	2.4	19	85	7	58	0	27	0	72	0.85
435465--435586	62	2.0	62	95	0	217	42	16	20	20	1.89
437420--437475	21	2.7	21	77	5	60	28	14	14	42	1.84
438020--438486	59	7.9	59	75	4	375	28	18	25	27	1.98
438145--438522	178	2.1	179	82	3	440	29	18	25	26	1.98
438028--438522	120	4.2	117	80	6	478	28	17	25	27	1.98
443853--443915	23	2.7	23	92	0	99	39	19	4	36	1.72
445208--445250	20	2.1	20	86	4	59	9	30	44	16	1.79
445691--445729	13	3.0	13	96	0	69	35	15	17	30	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25