genome.fa.s10.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold10
Parameters: 2 7 7 80 10 50 1000
Length:  3842500

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  7  of  25  ( 2970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929137--929175	20	2.0	20	89	0	60	46	7	2	43	1.46
930304--930343	12	3.8	11	84	15	50	70	0	0	30	0.88
930336--930364	8	3.8	8	95	4	51	65	0	0	34	0.93
930378--930487	17	6.6	17	66	20	63	53	0	2	43	1.15
930481--930568	27	3.1	27	70	17	72	38	0	0	61	0.96
930447--930552	14	7.4	14	66	24	53	43	0	0	56	0.99
930824--930885	29	2.1	30	84	3	81	53	1	0	45	1.10
931492--931576	2	44.0	2	73	6	59	42	3	5	48	1.44
944516--944567	19	2.7	20	84	6	70	40	17	13	28	1.87
947659--947695	19	1.9	19	88	0	56	48	8	13	29	1.71
947761--947801	21	2.0	21	85	0	55	31	2	14	51	1.56
947829--947885	29	1.9	30	82	3	71	40	8	12	38	1.74
948068--948113	23	2.0	23	86	0	65	30	8	15	45	1.76
949012--949145	63	2.1	62	86	1	178	32	21	8	38	1.83
951313--951522	97	2.1	96	84	7	260	38	11	21	29	1.88
951417--951493	22	3.5	22	87	0	118	38	10	22	28	1.87
951482--951562	23	3.5	24	70	14	80	38	11	25	24	1.89
951541--951571	10	3.1	10	90	0	53	41	6	29	22	1.78
951599--951623	13	1.9	13	100	0	50	36	16	16	32	1.90
951704--951744	21	2.0	21	85	9	57	36	12	14	36	1.84
952461--952630	85	2.0	85	97	0	322	32	25	7	34	1.83
953348--953372	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957080--957203	22	5.5	22	77	11	144	37	10	25	27	1.88
957191--957221	10	3.1	10	90	0	53	41	6	29	22	1.78
958828--958876	16	2.8	18	79	14	59	26	0	2	71	0.97
959813--959856	22	2.0	22	95	0	79	40	2	4	52	1.34
962023--962077	22	2.6	21	82	5	65	45	0	1	52	1.11
962039--962175	16	8.4	16	68	16	57	39	2	2	55	1.27
962128--962179	22	2.4	21	80	3	59	34	0	1	63	1.06
962150--962210	32	1.9	31	87	9	88	34	0	4	60	1.18
962251--962293	19	2.3	18	84	4	50	53	0	0	46	1.00
962263--962344	19	4.3	20	74	20	77	45	0	1	53	1.08
962263--962344	38	2.2	39	78	14	91	45	0	1	53	1.08
966281--966350	28	2.6	27	77	6	70	58	0	1	40	1.07
966913--966955	14	3.1	14	80	9	52	53	0	0	46	1.00
971306--971346	21	2.0	21	85	4	57	41	0	0	58	0.98
971318--971356	21	1.9	21	84	5	53	38	2	0	58	1.12
974643--974680	18	2.1	18	95	0	67	39	13	0	47	1.42
977186--977215	2	15.0	2	100	0	60	50	0	50	0	1.00
977369--977423	25	2.2	25	84	12	69	52	0	0	47	1.00
977417--977460	23	1.9	23	90	0	70	43	2	4	50	1.35
977416--977465	23	2.2	23	81	0	64	44	4	4	48	1.40
978877--978916	2	20.0	2	100	0	80	50	0	0	50	1.00
980526--980578	19	2.9	18	83	8	63	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986402--986457	21	2.8	20	86	2	67	42	12	10	33	1.77
1007313--1007348	2	18.5	2	94	5	65	50	0	0	50	1.00
1007316--1007348	17	1.9	17	100	0	66	48	0	0	51	1.00
1011638--1011672	18	1.9	18	94	0	61	62	0	0	37	0.95
1011657--1011764	42	2.5	42	82	10	123	61	0	0	37	1.03
1011671--1011761	35	2.6	33	74	19	87	60	0	1	38	1.04
1011928--1011977	8	6.1	8	84	11	57	42	0	0	58	0.98
1011936--1011976	2	21.5	2	85	9	59	43	0	0	56	0.99
1012190--1012216	11	2.5	11	100	0	54	62	0	0	37	0.95
1012217--1012256	18	2.3	18	91	4	64	30	0	0	70	0.88
1012328--1012407	22	3.9	21	70	22	62	46	1	0	52	1.08
1012324--1012409	40	2.2	37	80	14	91	46	1	0	52	1.08
1013529--1013571	18	2.4	18	80	0	50	81	2	0	16	0.79
1013764--1013798	19	1.9	18	88	11	54	48	0	0	51	1.00
1013931--1013955	2	12.5	2	100	0	50	48	0	0	52	1.00
1016561--1016599	17	2.4	17	91	4	62	25	17	0	56	1.41
1016886--1016931	24	1.9	24	86	8	67	63	0	2	34	1.07
1021054--1021227	89	2.0	88	81	3	206	30	16	13	39	1.87
1021313--1021386	15	4.7	15	69	14	51	59	5	6	28	1.45
1022469--1022674	114	1.8	114	84	2	288	26	15	14	44	1.84
1031444--1031468	13	1.9	13	100	0	50	36	16	16	32	1.90
1031509--1031675	19	9.7	19	75	22	181	36	18	10	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031566--1031622	13	3.9	13	76	24	60	33	17	14	35	1.90
1031507--1031674	32	5.0	32	89	7	246	36	18	10	34	1.86
1031507--1031641	51	2.6	52	75	22	158	37	18	11	33	1.86
1041809--1041866	27	2.1	27	87	0	80	27	31	17	24	1.97
1044752--1044850	31	3.2	31	78	5	110	19	30	24	26	1.98
1044718--1044853	62	2.2	62	90	0	209	19	30	23	27	1.98
1044836--1045758	28	33.0	28	76	5	481	25	17	26	30	1.97
1044839--1045760	84	11.0	84	76	5	603	25	17	26	30	1.97
1045423--1045691	141	1.9	140	81	6	330	25	17	26	30	1.97
1045423--1045761	141	2.4	140	77	9	325	25	17	25	30	1.97
1049400--1049450	20	2.5	20	81	12	59	35	3	33	27	1.75
1050259--1050312	28	1.9	28	85	7	74	31	18	22	27	1.97
1051112--1051366	28	9.1	28	79	8	234	25	17	28	29	1.98
1052559--1052607	17	2.9	17	88	11	75	71	6	0	22	1.08
1052519--1052623	41	2.5	43	81	10	119	71	4	1	21	1.14
1052591--1052628	11	3.2	12	85	11	51	76	7	0	15	1.01
1054439--1054486	21	2.2	21	82	17	55	14	4	16	64	1.43
1054444--1054486	23	1.9	22	86	13	61	16	4	16	62	1.48
1058307--1058334	13	2.2	13	100	0	56	35	35	7	21	1.81
1063059--1063123	25	2.5	24	80	11	67	20	3	4	72	1.16
1063085--1063137	8	6.6	8	78	8	54	16	0	3	79	0.88
1063102--1063140	15	2.7	14	88	7	60	20	0	2	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1067285--1067369	14	6.5	14	71	15	65	37	9	17	35	1.82
1067381--1067649	28	9.6	28	72	6	150	35	29	12	22	1.90
1067381--1067649	84	3.2	83	79	5	256	35	29	12	22	1.90
1067381--1067680	56	5.3	55	74	4	197	35	29	13	22	1.92
1068427--1068472	18	2.5	18	82	13	58	73	6	8	10	1.23
1068606--1068662	9	6.5	8	75	16	51	77	1	0	21	0.86
1070655--1070685	3	10.3	3	92	0	53	64	0	0	35	0.94
1077314--1077358	16	2.8	16	83	12	65	55	0	0	44	0.99
1077326--1077401	13	5.4	14	73	16	68	56	0	0	43	0.99
1078824--1078895	32	2.3	31	79	11	74	66	1	0	31	1.00
1078904--1078987	9	9.3	9	70	14	57	0	22	0	77	0.77
1079142--1079242	44	2.3	44	82	16	122	55	0	0	44	0.99
1079168--1079222	23	2.3	24	75	3	58	54	0	0	45	0.99
1079142--1079226	42	2.0	44	86	11	122	55	0	0	44	0.99
1080216--1080276	19	3.5	19	76	19	69	0	18	0	81	0.68
1081246--1081299	17	3.1	17	82	17	67	1	16	0	81	0.78
1081246--1081299	18	3.1	18	86	10	76	1	16	0	81	0.78
1081738--1081763	2	13.0	2	100	0	52	50	0	0	50	1.00
1082597--1082638	17	2.5	17	78	17	52	45	0	0	54	0.99
1083136--1083165	2	15.0	2	100	0	60	50	0	50	0	1.00
1086344--1086390	23	2.0	23	87	4	67	53	0	0	46	1.00
1086352--1086401	23	2.2	23	82	7	57	56	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086513--1086562	21	2.5	21	87	6	68	32	4	2	62	1.25
1086692--1086718	2	13.5	2	100	0	54	48	0	0	51	1.00
1087260--1087321	32	2.0	32	83	3	81	35	12	9	41	1.76
1088389--1088428	11	3.6	11	83	10	55	52	0	0	47	1.00
1088380--1088429	21	2.3	22	83	13	68	54	0	0	46	1.00
1088663--1088809	26	5.3	27	69	22	81	39	0	0	60	0.97
1088685--1088757	17	4.5	16	73	23	55	47	0	0	52	1.00
1088748--1088805	7	8.4	7	72	16	50	29	0	0	70	0.87
1088696--1088776	32	2.5	33	82	6	103	43	0	0	56	0.99
1088749--1088805	20	3.0	19	76	14	64	28	0	0	71	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25